Ss1.1-Pig4-TMW8054M07.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTTTTTTTACTGGAAATTGGTTTTAATCATAATTAAATAGTCTGTGATTAAGCCATAAT TGAGGTCGTGGGCTCCAGTCCTCTTCCGAGCTTCCTGTGGCTCCGCTGCCTGAAGCCTCC CCTAGTGCAGTTTTCCTCCCAGCTTGGCCCAGTGGTGCCAGCAGTGCCCAGGGCAGCTGT CACCGCTCCACGGCCAGGGCTTCAGCCTGTTCCTCAGGGAAGGCGATATCAAAGATCTCA CGGTAGTGCTCCACAAAGTGCACCTCCAGGCCCTCGGTGATGAAGGCGGCCAGGTCATAG AAGTCTTTCTTGTTCTCAGCCGGCAAGACAATGCATGTCACCCCAGCTCGCTTGGCCGCA ATGGTCTTCTCTTTGATGCCACCCACAGGCAGGACCTTCCCTGTGAGGGAGACCTCGCCT GTCATGGCCAAGTTCTGCCGCACCGGCCGATCCATAGCCAAGGAGAGCAGGGCCGTGACG ATAGTGCAGCCCGCACTGGGGCCATCCTTCGGGGTGGCACCCTCAGGTACGTGCAGGTGG ATGTGCGAGGTCACCAGGTACTCGTTGGTGGGGTCATGCTGCATCAGGAAGGCCCTGGCG AAGGTGTAGGCGATGCGGGCACTCTCCTTCATCACCTCCCCCAACTGGCCTGTCACCTCC AGGCTCCCATCCTTGTCCCCCTTGGTGCTGTCTCTGTCCCGTGGCCGCCTCAGAGACGTC TCAACAAACAGTGTAGAGCCTCCCATGGCGGTCCAGGCCAGGCCCATGACCACACCGGGG GGCGTCACGTCGTACATGCGCTCCACTGTGAACACCGGCTTCCCCACAAAGTCCTGCAGG TTCTCAGGTGTCACCTCCACAAACTCGGCCTCACCGCTGACAATCTTGTAGGCGGACTTC CGTAACACCTTCTCCACCTGCTTTTGCAGGTTGCGGACGCCGCTCTCTCGGCAGTACTGC TTGATGAGGAGGGTCAGCACGTCTGACGACAGCTTGGCCTTGCTCTCGTCCAGGCCACAC TGGGCACGGGCCTGAGGCACCAGGTACCGCTCTGCAATGGCCAGCTTCTCCTGGGCCACG TAGCCCGACACATTGATCATCTCCATCCGGTCCCGCAGCGGCTCGGGGATGGTCTCGGTG ATGTTGGCCGTGCAGATGAACAGCACCTTGGACAAGTCCACAGGCACATCCAGATAGTGG TCCAGGAAGTTGGCGTTCTGCTCAGGGTCCAGCAGCTCGAGCAGCGCTGAGGAGGGGTCC CCCTGGTAACCCCGGCCGATCTTGTCCACCTCATCTATGAGGACCAGGGGGTTCTCCGTC TTGGTCTTCTTCAGGCACTGGATGATCTTCCCAGGCATGGCGCCCACATACGTCCGCCTG TGCCCCTTGATCTCAGCCACGTCCGTCATGCCCCCGACACTGAAGCGGAAGTACTCCCGG TTCAGGGCACGGGCGATGGAGCGGGCGATGCTGGTCTTGCCCACGCCCGGGGGGCCGTAG AAGCAGAGGATCTTGCCCTGGGTGGAGCCCCGGAGCTGGCTGACGGCGATGAACTCCAGG ATACGCTTCTTGACGTCCTCCATCCCATAGTGGTCCTCCTCCAGCACTGCCTGGGCGCGG GCCAGGTCCAGGTTCTCGTCACTGTACTTGCCCCACGGAATGGATGTCAGCCAGTCCAGG TAGTTCCGGGTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTTTTTTTACTGGAAATTGGTTTTAATCATAATTAAATAGTCTGTGATTAAGCCATAAT TGAGGTCGTGGGCTCCAGTCCTCTTCCGAGCTTCCTGTGGCTCCGCTGCCTGAAGCCTCC CCTAGTGCAGTTTTCCTCCCAGCTTGGCCCAGTGGTGCCAGCAGTGCCCAGGGCAGCTGT CACCGCTCCACGGCCAGGGCTTCAGCCTGTTCCTCAGGGAAGGCGATATCAAAGATCTCA CGGTAGTGCTCCACAAAGTGCACCTCCAGGCCCTCGGTGATGAAGGCGGCCAGGTCATAG AAGTCTTTCTTGTTCTCAGCCGGCAAGACAATGCATGTCACCCCAGCTCGCTTGGCCGCA ATGGTCTTCTCTTTGATGCCACCCACAGGCAGGACCTTCCCTGTGAGGGAGACCTCGCCT GTCATGGCCAAGTTCTGCCGCACCGGCCGATCCATAGCCAAGGAGAGCAGGGCCGTGACG ATAGTGCAGCCCGCACTGGGGCCATCCTTCGGGGTGGCACCCTCAGGTACGTGCAGGTGG ATGTGCGAGGTCACCAGGTACTCGTTGGTGGGGTCATGCTGCATCAGGAAGGCCCTGGCG AAGGTGTAGGCGATGCGGGCACTCTCCTTCATCACCTCCCCCAACTGGCCTGTCACCTCC AGGCTCCCATCCTTGTCCCCCTTGGTGCTGTCTCTGTCCCGTGGCCGCCTCAGAGACGTC TCAACAAACAGTGTAGAGCCTCCCATGGCGGTCCAGGCCAGGCCCATGACCACACCGGGG GGCGTCACGTCGTACATGCGCTCCACTGTGAACACCGGCTTCCCCACAAAGTCCTGCAGG TTCTCAGGTGTCACCTCCACAAACTCGGCCTCACCGCTGACAATCTTGTAGGCGGACTTC CGTAACACCTTCTCCACCTGCTTTTGCAGGTTGCGGACGCCGCTCTCTCGGCAGTACTGC TTGATGAGGAGGGTCAGCACGTCTGACGACAGCTTGGCCTTGCTCTCGTCCAGGCCACAC TGGGCACGGGCCTGAGGCACCAGGTACCGCTCTGCAATGGCCAGCTTCTCCTGGGCCACG TAGCCCGACACATTGATCATCTCCATCCGGTCCCGCAGCGGCTCGGGGATGGTCTCGGTG ATGTTGGCCGTGCAGATGAACAGCACCTTGGACAAGTCCACAGGCACATCCAGATAGTGG TCCAGGAAGTTGGCGTTCTGCTCAGGGTCCAGCAGCTCGAGCAGCGCTGAGGAGGGGTCC CCCTGGTAACCCCGGCCGATCTTGTCCACCTCATCTATGAGGACCAGGGGGTTCTCCGTC TTGGTCTTCTTCAGGCACTGGATGATCTTCCCAGGCATGGCGCCCACATACGTCCGCCTG TGCCCCTTGATCTCAGCCACGTCCGTCATGCCCCCGACACTGAAGCGGAAGTACTCCCGG TTCAGGGCACGGGCGATGGAGCGGGCGATGCTGGTCTTGCCCACGCCCGGGGGGCCGTAG AAGCAGAGGATCTTGCCCTGGGTGGAGCCCCGGAGCTGGCTGACGGCGATGAACTCCAGG ATACGCTTCTTGACGTCCTCCATCCCATAGTGGTCCTCCTCCAGCACTGCCTGGGCGCGG GCCAGGTCCAGGTTCTCGTCACTGTACTTGCCCCACGGAATGGATGTCAGCCAGTCCAGG TAGTTCCGGGTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 906-1024, - strand, RNAz p=0.713266 | |
| 906-1019, - strand, RNAz p=0.563213 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 906-1024, - strand, RNAz p=0.713266 | |
| 906-1019, - strand, RNAz p=0.563213 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 9-357, gnl|bosTau2|chr7 (13338303-13337967) | |
| 9-357, gnl|Hg17|chr19 (5642845-5643220) | |
| 521-769, gnl|bosTau2|chr7 (13336746-13336499) | |
| 521-769, gnl|Hg17|chr19 (5644562-5644803) | |
| 521-769, gnl|Mm7|chr17 (54824532-54824754) | |
| 906-1051, gnl|bosTau2|chr7 (13335316-13335171) | |
| 906-1051, gnl|canFam2|chr20 (57275721-57275600) | |
| 906-1051, gnl|danRer3|chr2 (11350210-11350328) | |
| 906-1051, gnl|fr1|chrUn (302378198-302378077) | |
| 906-1051, gnl|galGal2|chr28 (626511-626631) | |
| 906-1051, gnl|hg17|chr19 (5645764-5645888) | |
| 906-1051, gnl|Hg17|chr19 (5645769-5645914) | |
| 906-1051, gnl|mm7|chr17 (54825159-54825280) | |
| 906-1051, gnl|Mm7|chr17 (54825161-54825306) | |
| 906-1051, gnl|monDom2|scaffold_85 (3459120-3459241) | |
| 906-1051, gnl|panTro1|chr20 (5971892-5972016) | |
| 906-1051, gnl|rn3|chrUn (25162556-25162435) | |
| 906-1051, gnl|tetNig1|chrUn_random (49788744-49788622) | |
| 906-1051, gnl|xenTro1|scaffold_87 (2181436-2181313) | |
| 1163-1291, gnl|bosTau2|chr7 (13332936-13332808) | |
| 1163-1291, gnl|Hg17|chr19 (5647256-5647384) | |
| 1163-1291, gnl|Mm7|chr17 (54825786-54825914) | |
| 1377-1557, gnl|bosTau2|chr7 (13331192-13331012) | |
| 1377-1557, gnl|Hg17|chr19 (5650037-5650217) | |
| 1377-1557, gnl|Mm7|chr17 (54827413-54827593) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 9-357, gnl|bosTau2|chr7 (13338303-13337967) | |
| 9-357, gnl|Hg17|chr19 (5642845-5643220) | |
| 521-769, gnl|bosTau2|chr7 (13336746-13336499) | |
| 521-769, gnl|Hg17|chr19 (5644562-5644803) | |
| 521-769, gnl|Mm7|chr17 (54824532-54824754) | |
| 906-1051, gnl|bosTau2|chr7 (13335316-13335171) | |
| 906-1051, gnl|canFam2|chr20 (57275721-57275600) | |
| 906-1051, gnl|danRer3|chr2 (11350210-11350328) | |
| 906-1051, gnl|fr1|chrUn (302378198-302378077) | |
| 906-1051, gnl|galGal2|chr28 (626511-626631) | |
| 906-1051, gnl|hg17|chr19 (5645764-5645888) | |
| 906-1051, gnl|Hg17|chr19 (5645769-5645914) | |
| 906-1051, gnl|mm7|chr17 (54825159-54825280) | |
| 906-1051, gnl|Mm7|chr17 (54825161-54825306) | |
| 906-1051, gnl|monDom2|scaffold_85 (3459120-3459241) | |
| 906-1051, gnl|panTro1|chr20 (5971892-5972016) | |
| 906-1051, gnl|rn3|chrUn (25162556-25162435) | |
| 906-1051, gnl|tetNig1|chrUn_random (49788744-49788622) | |
| 906-1051, gnl|xenTro1|scaffold_87 (2181436-2181313) | |
| 1163-1291, gnl|bosTau2|chr7 (13332936-13332808) | |
| 1163-1291, gnl|Hg17|chr19 (5647256-5647384) | |
| 1163-1291, gnl|Mm7|chr17 (54825786-54825914) | |
| 1377-1557, gnl|bosTau2|chr7 (13331192-13331012) | |
| 1377-1557, gnl|Hg17|chr19 (5650037-5650217) | |
| 1377-1557, gnl|Mm7|chr17 (54827413-54827593) |
| Expressed library(ies): 16 entry(ies) | More info |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
| cov (0.660764) | |
| elu (0.385356) | |
| cag (0.302389) | |
| fce (0.271592) | |
| mas (0.210305) | |
| nep (0.183925) | |
| ill (0.175593) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| cli (0.152812) | |
| csk (0.140746) | |
| ute (0.132784) | |
| eep (0.122564) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| ldo (0.0970026) |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (0.660764) | |
| elu (0.385356) | |
| cag (0.302389) | |
| fce (0.271592) | |
| mas (0.210305) | |
| nep (0.183925) | |
| ill (0.175593) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| cli (0.152812) | |
| csk (0.140746) | |
| ute (0.132784) | |
| eep (0.122564) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| ldo (0.0970026) |