Ss1.1-Pig4-TMW8054M14.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATGACGCACGACCCGAGCTTCCGCGTCGGGGGAGCCGGCGGCGGATCCCGGGACGCGGAG ACCCGGGGTCCCGGCAGCTGGGTGGCCTGCGGGCCACGGCGGGGATGCACCGCCGCGGGG TGGGCGCTGGCGCCATCGCCAAGAAGAAGCTTGCCGAGGCCAAGTATAAGGAGCGAGGGA CTGTCTTGGCTGAGGACCAACTGGCCCAGATGTCAAAGCAGTTGGACATGTTCAAGACCA ACCTGGAAGAATTTGCTAGCAAGCACAAGCAGGAGATCCGGAAGAATCCCGAGTTCCGGG TGCAGTTCCAGGACATGTGTGCCACCATTGGGGTGGATCCTCTGGCCTCTGGAAAAGGAT TTTGGTCTGAGATGCTAGGCGTGGGAGATTTCTATTACGAGCTGGGTGTCCAGATTATCG AAGTATGCCTGGCCCTGAAGCACCGGAATGGAGGTCTGATAACTCTGGAAGAACTACATC AACAGGTGTTGAAAGGCAGGGGCAAATTCGCCCAGGATGTCAGCCAAGACGACCTGATCA GAGCCATCAAGAAACTAAAGGCCCTTGGCACCGGCTTCAGCATCATCCCTGTGGGCGGCA CGTACCTCATTCAGTCTGTTCCAGCCGAGCTCAATATGGATCACACTGTGGTGCTGCAGT TGGCAGAGAAAAACGGCTACGTGACTGTCAGTGATATCAAAGCCAGTCTTAAATGGGAGA CCGAGCGAGCGCGACAAGTGCTGGAACACCTGCTGAAGGAAGGACTGGCTTGGCTGGATC TGCAGGCCCCAGGGGAGGCCCACTACTGGCTGCCGGCTCTCTTCACGGACCTCTACTCCC AGGAGATTACAGCTGAGGAGGCCAGAGAAGCCCTCCCCTGACTGGGAATGCAGAAGGGGG CACAGCAGCAGGCACGGAGAAGAGGGAGGAGCTGGTGGTAAATAAAACCTGGACAACTGT GTTTTAAGAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATGACGCACGACCCGAGCTTCCGCGTCGGGGGAGCCGGCGGCGGATCCCGGGACGCGGAG ACCCGGGGTCCCGGCAGCTGGGTGGCCTGCGGGCCACGGCGGGGATGCACCGCCGCGGGG TGGGCGCTGGCGCCATCGCCAAGAAGAAGCTTGCCGAGGCCAAGTATAAGGAGCGAGGGA CTGTCTTGGCTGAGGACCAACTGGCCCAGATGTCAAAGCAGTTGGACATGTTCAAGACCA ACCTGGAAGAATTTGCTAGCAAGCACAAGCAGGAGATCCGGAAGAATCCCGAGTTCCGGG TGCAGTTCCAGGACATGTGTGCCACCATTGGGGTGGATCCTCTGGCCTCTGGAAAAGGAT TTTGGTCTGAGATGCTAGGCGTGGGAGATTTCTATTACGAGCTGGGTGTCCAGATTATCG AAGTATGCCTGGCCCTGAAGCACCGGAATGGAGGTCTGATAACTCTGGAAGAACTACATC AACAGGTGTTGAAAGGCAGGGGCAAATTCGCCCAGGATGTCAGCCAAGACGACCTGATCA GAGCCATCAAGAAACTAAAGGCCCTTGGCACCGGCTTCAGCATCATCCCTGTGGGCGGCA CGTACCTCATTCAGTCTGTTCCAGCCGAGCTCAATATGGATCACACTGTGGTGCTGCAGT TGGCAGAGAAAAACGGCTACGTGACTGTCAGTGATATCAAAGCCAGTCTTAAATGGGAGA CCGAGCGAGCGCGACAAGTGCTGGAACACCTGCTGAAGGAAGGACTGGCTTGGCTGGATC TGCAGGCCCCAGGGGAGGCCCACTACTGGCTGCCGGCTCTCTTCACGGACCTCTACTCCC AGGAGATTACAGCTGAGGAGGCCAGAGAAGCCCTCCCCTGACTGGGAATGCAGAAGGGGG CACAGCAGCAGGCACGGAGAAGAGGGAGGAGCTGGTGGTAAATAAAACCTGGACAACTGT GTTTTAAGAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 822-941, + strand, RNAz p=0.950544 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 822-941, + strand, RNAz p=0.950544 |
| Aligned organism(s): 77 entry(ies) | More info |
| Aligned organism(s): 77 entry(ies) | Help | Less info |
| 1-159, gnl|bosTau2|chr19 (30383165-30383322) | |
| 1-159, gnl|Hg17|chr17 (44377199-44377041) | |
| 1-159, gnl|Mm7|chr11 (96143949-96144107) | |
| 207-348, gnl|bosTau2|chr19 (30385685-30385826) | |
| 207-348, gnl|canFam2|chr9 (28484502-28484678) | |
| 207-348, gnl|canFam2|chr9 (28484507-28484614) | |
| 207-348, gnl|dasNov1|scaffold_126474 (4863-5002) | |
| 207-348, gnl|dasNov1|scaffold_126474 (4866-4971) | |
| 207-348, gnl|echTel1|scaffold_149868 (598-705) | |
| 207-348, gnl|echTel1|scaffold_287098 (43438-43265) | |
| 207-348, gnl|fr1|chrUn (215587224-215587079) | |
| 207-348, gnl|fr1|chrUn (215587215-215587112) | |
| 207-348, gnl|galGal2|chr27 (2330728-2330567) | |
| 207-348, gnl|galGal2|chr27 (2330723-2330616) | |
| 207-348, gnl|hg17|chr17 (44373281-44373455) | |
| 207-348, gnl|Hg17|chr17 (44373426-44373285) | |
| 207-348, gnl|hg17|chr2 (229042870-229042977) | |
| 207-348, gnl|loxAfr1|scaffold_18766 (20549-20375) | |
| 207-348, gnl|loxAfr1|scaffold_18766 (20544-20437) | |
| 207-348, gnl|mm7|chr11 (96148462-96148314) | |
| 207-348, gnl|Mm7|chr11 (96148315-96148456) | |
| 207-348, gnl|mm7|chr13 (93446530-93446423) | |
| 207-348, gnl|monDom2|scaffold_18 (45194889-45194720) | |
| 207-348, gnl|monDom2|scaffold_18 (45194888-45194781) | |
| 207-348, gnl|oryCun1|scaffold_180807 (5099-4927) | |
| 207-348, gnl|oryCun1|scaffold_180807 (5094-4987) | |
| 207-348, gnl|panTro1|chr13 (119658441-119658571) | |
| 207-348, gnl|panTro1|chr13 (119658430-119658537) | |
| 207-348, gnl|rheMac2|chr12 (92220389-92220495) | |
| 207-348, gnl|rheMac2|chr16 (33174041-33174215) | |
| 207-348, gnl|rn3|chr10 (84769513-84769365) | |
| 207-348, gnl|rn3|chr10 (84769508-84769401) | |
| 207-348, gnl|tetNig1|chr2 (1452269-1452441) | |
| 207-348, gnl|tetNig1|chr2 (1452278-1452381) | |
| 207-348, gnl|xenTro1|scaffold_19786 (3328-3173) | |
| 207-348, gnl|xenTro1|scaffold_19786 (3324-3220) | |
| 349-455, gnl|bosTau2|chr19 (30386652-30386758) | |
| 349-455, gnl|canFam2|chr9 (28482736-28482904) | |
| 349-455, gnl|canFam2|chr9 (28482767-28482848) | |
| 349-455, gnl|danRer3|chr22 (28456944-28456791) | |
| 349-455, gnl|danRer3|chr22 (28456923-28456846) | |
| 349-455, gnl|dasNov1|scaffold_11618 (21298-21465) | |
| 349-455, gnl|dasNov1|scaffold_126474 (4760-4840) | |
| 349-455, gnl|echTel1|scaffold_149868 (491-572) | |
| 349-455, gnl|echTel1|scaffold_287098 (44515-44353) | |
| 349-455, gnl|fr1|chrUn (215587436-215587286) | |
| 349-455, gnl|fr1|chrUn (215587410-215587329) | |
| 349-455, gnl|galGal2|chr27 (2331149-2330994) | |
| 349-455, gnl|galGal2|chr27 (2330850-2330759) | |
| 349-455, gnl|hg17|chr17 (44369349-44369517) | |
| 349-455, gnl|Hg17|chr17 (44369485-44369379) | |
| 349-455, gnl|hg17|chr2 (229042764-229042844) | |
| 349-455, gnl|loxAfr1|scaffold_18766 (21645-21475) | |
| 349-455, gnl|loxAfr1|scaffold_18766 (21615-21534) | |
| 349-455, gnl|mm7|chr11 (96150802-96150635) | |
| 349-455, gnl|Mm7|chr11 (96150664-96150770) | |
| 349-455, gnl|mm7|chr13 (93446637-93446556) | |
| 349-455, gnl|monDom2|scaffold_18 (45195611-45195460) | |
| 349-455, gnl|monDom2|scaffold_18 (45195598-45195517) | |
| 349-455, gnl|oryCun1|scaffold_180807 (7366-7201) | |
| 349-455, gnl|oryCun1|scaffold_180807 (7337-7256) | |
| 349-455, gnl|panTro1|chr13 (119658324-119658404) | |
| 349-455, gnl|panTro1|chr19_random (43320673-43320841) | |
| 349-455, gnl|rheMac2|chr12 (92220283-92220363) | |
| 349-455, gnl|rheMac2|chr16 (33170816-33170984) | |
| 349-455, gnl|rn3|chr10 (84770745-84770578) | |
| 349-455, gnl|rn3|chr10 (84770714-84770633) | |
| 349-455, gnl|tetNig1|chr2 (1452079-1452209) | |
| 349-455, gnl|tetNig1|chr2 (1452085-1452166) | |
| 349-455, gnl|xenTro1|scaffold_329 (731116-731273) | |
| 349-455, gnl|xenTro1|scaffold_329 (731157-731221) | |
| 527-668, gnl|bosTau2|chr19 (30388383-30388524) | |
| 527-668, gnl|Hg17|chr17 (44365707-44365566) | |
| 527-668, gnl|Mm7|chr11 (96154200-96154341) | |
| 743-971, gnl|bosTau2|chr19 (30390459-30390684) | |
| 743-971, gnl|Hg17|chr17 (44362974-44362755) | |
| 743-971, gnl|Mm7|chr11 (96156233-96156444) |
| Aligned organism(s): 77 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-159, gnl|bosTau2|chr19 (30383165-30383322) | |
| 1-159, gnl|Hg17|chr17 (44377199-44377041) | |
| 1-159, gnl|Mm7|chr11 (96143949-96144107) | |
| 207-348, gnl|bosTau2|chr19 (30385685-30385826) | |
| 207-348, gnl|canFam2|chr9 (28484502-28484678) | |
| 207-348, gnl|canFam2|chr9 (28484507-28484614) | |
| 207-348, gnl|dasNov1|scaffold_126474 (4863-5002) | |
| 207-348, gnl|dasNov1|scaffold_126474 (4866-4971) | |
| 207-348, gnl|echTel1|scaffold_149868 (598-705) | |
| 207-348, gnl|echTel1|scaffold_287098 (43438-43265) | |
| 207-348, gnl|fr1|chrUn (215587224-215587079) | |
| 207-348, gnl|fr1|chrUn (215587215-215587112) | |
| 207-348, gnl|galGal2|chr27 (2330728-2330567) | |
| 207-348, gnl|galGal2|chr27 (2330723-2330616) | |
| 207-348, gnl|hg17|chr17 (44373281-44373455) | |
| 207-348, gnl|Hg17|chr17 (44373426-44373285) | |
| 207-348, gnl|hg17|chr2 (229042870-229042977) | |
| 207-348, gnl|loxAfr1|scaffold_18766 (20549-20375) | |
| 207-348, gnl|loxAfr1|scaffold_18766 (20544-20437) | |
| 207-348, gnl|mm7|chr11 (96148462-96148314) | |
| 207-348, gnl|Mm7|chr11 (96148315-96148456) | |
| 207-348, gnl|mm7|chr13 (93446530-93446423) | |
| 207-348, gnl|monDom2|scaffold_18 (45194889-45194720) | |
| 207-348, gnl|monDom2|scaffold_18 (45194888-45194781) | |
| 207-348, gnl|oryCun1|scaffold_180807 (5099-4927) | |
| 207-348, gnl|oryCun1|scaffold_180807 (5094-4987) | |
| 207-348, gnl|panTro1|chr13 (119658441-119658571) | |
| 207-348, gnl|panTro1|chr13 (119658430-119658537) | |
| 207-348, gnl|rheMac2|chr12 (92220389-92220495) | |
| 207-348, gnl|rheMac2|chr16 (33174041-33174215) | |
| 207-348, gnl|rn3|chr10 (84769513-84769365) | |
| 207-348, gnl|rn3|chr10 (84769508-84769401) | |
| 207-348, gnl|tetNig1|chr2 (1452269-1452441) | |
| 207-348, gnl|tetNig1|chr2 (1452278-1452381) | |
| 207-348, gnl|xenTro1|scaffold_19786 (3328-3173) | |
| 207-348, gnl|xenTro1|scaffold_19786 (3324-3220) | |
| 349-455, gnl|bosTau2|chr19 (30386652-30386758) | |
| 349-455, gnl|canFam2|chr9 (28482736-28482904) | |
| 349-455, gnl|canFam2|chr9 (28482767-28482848) | |
| 349-455, gnl|danRer3|chr22 (28456944-28456791) | |
| 349-455, gnl|danRer3|chr22 (28456923-28456846) | |
| 349-455, gnl|dasNov1|scaffold_11618 (21298-21465) | |
| 349-455, gnl|dasNov1|scaffold_126474 (4760-4840) | |
| 349-455, gnl|echTel1|scaffold_149868 (491-572) | |
| 349-455, gnl|echTel1|scaffold_287098 (44515-44353) | |
| 349-455, gnl|fr1|chrUn (215587436-215587286) | |
| 349-455, gnl|fr1|chrUn (215587410-215587329) | |
| 349-455, gnl|galGal2|chr27 (2331149-2330994) | |
| 349-455, gnl|galGal2|chr27 (2330850-2330759) | |
| 349-455, gnl|hg17|chr17 (44369349-44369517) | |
| 349-455, gnl|Hg17|chr17 (44369485-44369379) | |
| 349-455, gnl|hg17|chr2 (229042764-229042844) | |
| 349-455, gnl|loxAfr1|scaffold_18766 (21645-21475) | |
| 349-455, gnl|loxAfr1|scaffold_18766 (21615-21534) | |
| 349-455, gnl|mm7|chr11 (96150802-96150635) | |
| 349-455, gnl|Mm7|chr11 (96150664-96150770) | |
| 349-455, gnl|mm7|chr13 (93446637-93446556) | |
| 349-455, gnl|monDom2|scaffold_18 (45195611-45195460) | |
| 349-455, gnl|monDom2|scaffold_18 (45195598-45195517) | |
| 349-455, gnl|oryCun1|scaffold_180807 (7366-7201) | |
| 349-455, gnl|oryCun1|scaffold_180807 (7337-7256) | |
| 349-455, gnl|panTro1|chr13 (119658324-119658404) | |
| 349-455, gnl|panTro1|chr19_random (43320673-43320841) | |
| 349-455, gnl|rheMac2|chr12 (92220283-92220363) | |
| 349-455, gnl|rheMac2|chr16 (33170816-33170984) | |
| 349-455, gnl|rn3|chr10 (84770745-84770578) | |
| 349-455, gnl|rn3|chr10 (84770714-84770633) | |
| 349-455, gnl|tetNig1|chr2 (1452079-1452209) | |
| 349-455, gnl|tetNig1|chr2 (1452085-1452166) | |
| 349-455, gnl|xenTro1|scaffold_329 (731116-731273) | |
| 349-455, gnl|xenTro1|scaffold_329 (731157-731221) | |
| 527-668, gnl|bosTau2|chr19 (30388383-30388524) | |
| 527-668, gnl|Hg17|chr17 (44365707-44365566) | |
| 527-668, gnl|Mm7|chr11 (96154200-96154341) | |
| 743-971, gnl|bosTau2|chr19 (30390459-30390684) | |
| 743-971, gnl|Hg17|chr17 (44362974-44362755) | |
| 743-971, gnl|Mm7|chr11 (96156233-96156444) |
| Expressed library(ies): 30 entry(ies) | More info |
| Expressed library(ies): 30 entry(ies) | Help | Less info |
| ton (0.526501) | |
| eye (0.511509) | |
| ece (0.45861) | |
| elu (0.385356) | |
| tbr (0.308356) | |
| ssp (0.271039) | |
| ute (0.265569) | |
| ebs (0.236602) | |
| mas (0.210305) | |
| fli (0.202881) | |
| fcc (0.197785) | |
| col (0.195008) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| mgm (0.180343) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| mcp (0.170648) | |
| cje (0.165235) | |
| nco (0.161734) | |
| csp (0.161186) | |
| cli (0.152812) | |
| hyp (0.142837) | |
| hlv (0.139256) | |
| che (0.136314) | |
| pla (0.133672) | |
| cov (0.132153) | |
| ese (0.126502) | |
| nbm (0.0993246) | |
| jej (0.0989218) |
| Expressed library(ies): 30 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ton (0.526501) | |
| eye (0.511509) | |
| ece (0.45861) | |
| elu (0.385356) | |
| tbr (0.308356) | |
| ssp (0.271039) | |
| ute (0.265569) | |
| ebs (0.236602) | |
| mas (0.210305) | |
| fli (0.202881) | |
| fcc (0.197785) | |
| col (0.195008) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| mgm (0.180343) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| mcp (0.170648) | |
| cje (0.165235) | |
| nco (0.161734) | |
| csp (0.161186) | |
| cli (0.152812) | |
| hyp (0.142837) | |
| hlv (0.139256) | |
| che (0.136314) | |
| pla (0.133672) | |
| cov (0.132153) | |
| ese (0.126502) | |
| nbm (0.0993246) | |
| jej (0.0989218) |