Non-Coding RNA Search

Ss1.1-Pig4-TMW8054M20.5

Sequence:


               
               TAAGAATGGAACCTGGGATGCAGGAACAAAAGAAGGAAATGTTGGGCAAACATTTTTGTG
GGAGCTCCCTTCGCTGTTGTGCAGCAGAAACAGATTCTCAGTTCATTTTTACTCCCACTG
TATTATAGTTTAACAAAAATTGTTTATATCTTGGAAAAAAAACTTTCTGTTTAAAAAATA
AACAAGTGAATGTTGGAAATTAGTCTGTTAATGTTCTTAATAAAGTGTTCTTGGAGTTTA
ACCTAGCAGCGGATGGCTTTCTTTAGCTTAGCCCAGTTTCCAGGGAAGCATTGTTTTTTC
CAGGCTGTAAAATGGCAGAATCTCCTGGATATATAATTTATTCTGTTGGAAAAAAAAAAA
AAAAAAAGCATGCAGTATCTATGACCTATCTGCAGAAGGAGTTTTTGTAAATGTAGATTT
TGATGTATTAGGTCACCCTGAAAACAATACAAGAAAAGGGATCCCCAGGCAATCTGGTGG
AGCGAATACTGCAATAAATTTTTTTACTTCTCCCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAAGAATGGAACCTGGGATGCAGGAACAAAAGAAGGAAATGTTGGGCAAACATTTTTGTG
GGAGCTCCCTTCGCTGTTGTGCAGCAGAAACAGATTCTCAGTTCATTTTTACTCCCACTG
TATTATAGTTTAACAAAAATTGTTTATATCTTGGAAAAAAAACTTTCTGTTTAAAAAATA
AACAAGTGAATGTTGGAAATTAGTCTGTTAATGTTCTTAATAAAGTGTTCTTGGAGTTTA
ACCTAGCAGCGGATGGCTTTCTTTAGCTTAGCCCAGTTTCCAGGGAAGCATTGTTTTTTC
CAGGCTGTAAAATGGCAGAATCTCCTGGATATATAATTTATTCTGTTGGAAAAAAAAAAA
AAAAAAAGCATGCAGTATCTATGACCTATCTGCAGAAGGAGTTTTTGTAAATGTAGATTT
TGATGTATTAGGTCACCCTGAAAACAATACAAGAAAAGGGATCCCCAGGCAATCTGGTGG
AGCGAATACTGCAATAAATTTTTTTACTTCTCCCTC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               40-159, - strand, RNAz p=0.781889
               

               
               237-356, + strand, RNAz p=0.900426

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-159, - strand, RNAz p=0.781889
               

               
               237-356, + strand, RNAz p=0.900426

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_133433, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_133433, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-512, gnl|bosTau2|chr20 (24595287-24595792)
               

               
               1-512, gnl|Hg17|chr5 (37100852-37101356)
               

               
               1-512, gnl|Mm7|chr15 (8117948-8117453)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-512, gnl|bosTau2|chr20 (24595287-24595792)
               

               
               1-512, gnl|Hg17|chr5 (37100852-37101356)
               

               
               1-512, gnl|Mm7|chr15 (8117948-8117453)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               ecc (0.23007)
               

               
               bfe (0.149858)
               

               
               lin (0.145603)
               

               
               lyg (0.133103)
               

               
               ret (0.128733)
               

               
               eje (0.0988338)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.23007)
               

               
               bfe (0.149858)
               

               
               lin (0.145603)
               

               
               lyg (0.133103)
               

               
               ret (0.128733)
               

               
               eje (0.0988338)

	40-159, - strand, RNAz p=0.781889
	237-356, + strand, RNAz p=0.900426

	1-512, gnl\|bosTau2\|chr20 (24595287-24595792)
	1-512, gnl\|Hg17\|chr5 (37100852-37101356)
	1-512, gnl\|Mm7\|chr15 (8117948-8117453)

	ecc (0.23007)
	bfe (0.149858)
	lin (0.145603)
	lyg (0.133103)
	ret (0.128733)
	eje (0.0988338)