Non-Coding RNA Search

Ss1.1-Pig4-TMW8054M21.3

Sequence:


               
               GCCAAAGAAGGCGCAGCTGGACGGCGGCGTGTCGGGATCGCAGAGGCTGGATTCTGCCAC
AGTCAGGACTTACTCCTGCTGAAGCCCCGCCGGCTACCCCCACTACTTCTACCGCTGACG
CGCAGCCGTGGCCCAGCAGAGACCCTGCACCCCGATGGAATCGTCCATCTGTTCATACTT
GTTATATGGACCCGGAGATATTTTATTACAGAGTTTTTAATTAGAGAAAGATTCATGAAT
ACCATAGAGAAAATATTTTAGAATTTAATGTTTCTTATATTTATGTAAACTTATGACTTC
ATTTATATAGCTACTTACTTTTTCATGTATATCCAGGCTATAAATATCCTTTCAAATCCG
TTCATGTTCTTATATCTGATTTTAGTCTTTCAAATGAATGTGCGGTAAGGCTTGTATGTA
TAAATCTTATGAACAAATATAGGGCTTTTGTAAATTGTGCATTTTATTGTAATTATCATT
GTTTAATTTTTTAATAATAAACCGCCACAGAGGAAAGGATTTTACTGCGTTTGTAAAATC
AAGACACAGTTGCACTAACCTTCACACGATGTGACTCGGCTCTGCAACAGTCATTTTGAA
GTGAGCAAACTTAATTTCAAGCAGTTGTTACATTTTAAGGACTGACCTTCACTGTACTTT
TTCTAGCAAGAACAGCTTTACTCTGCAGCGTGGAGACATGAATACCGGGTGTTAAGTGTC
TGATAAAATCCGGACCGAAAGCGTTGTCAGAACCCTCTGCAAAGCTCTGTGGACCGCTTA
CCTCCTCCCCAGCCTGGTCTCCGGGGCCCGGCGGGGGCTGGGGAACGAGACCCGGTGGGC
TGGGCCCTCGCCCGCCCCTTCCAGCACCTTCCTTCCAGCACCTTCCCAGACCTTCCCGCG
CTCCTCCTGCGGGCAGGCGGGGTCAGGCCACGGCAGACGCTCTGAGAGGACCAATGGCGG
AGCCCTTCGTGAAGCGAGAGACCCTGGAAATAATGCGACGCGACCCTAATAAAGGCCTTA
TTTTTCTTACGTAAATCCTCTCTTTACATCTGTTTGTAAACAGGTTTAAAGAACGGACCT
AGTCGTACATTTTTAGATTTTTGACGATATAGCCATTTTGGATTGTATAAGTAGCAAATG
TAACTTTTATCTTTTAAGTGGCATATTAAAAGCCAGCAGGAACTGTGTTCAGATCGCGGT
GCATTATTTATTATGCAGCTGATAGGGAGAGACACCTGTCTTCTTGCCTTTGGTTTCTGC
TTTCAATCTACTTGTACAATTCCTTGTCGCCATTCTGTTTTTCTAGTAATCTTTTGGGAA
CTTGCTGATTATGTAACAAAGTATATGTACAGTCTACTTTTGAACTATTTTTATCACAGT
GTTATTTATTGCTTTCTTTCAATAAAGTACTGAAGCGTTTTCCACTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCAAAGAAGGCGCAGCTGGACGGCGGCGTGTCGGGATCGCAGAGGCTGGATTCTGCCAC
AGTCAGGACTTACTCCTGCTGAAGCCCCGCCGGCTACCCCCACTACTTCTACCGCTGACG
CGCAGCCGTGGCCCAGCAGAGACCCTGCACCCCGATGGAATCGTCCATCTGTTCATACTT
GTTATATGGACCCGGAGATATTTTATTACAGAGTTTTTAATTAGAGAAAGATTCATGAAT
ACCATAGAGAAAATATTTTAGAATTTAATGTTTCTTATATTTATGTAAACTTATGACTTC
ATTTATATAGCTACTTACTTTTTCATGTATATCCAGGCTATAAATATCCTTTCAAATCCG
TTCATGTTCTTATATCTGATTTTAGTCTTTCAAATGAATGTGCGGTAAGGCTTGTATGTA
TAAATCTTATGAACAAATATAGGGCTTTTGTAAATTGTGCATTTTATTGTAATTATCATT
GTTTAATTTTTTAATAATAAACCGCCACAGAGGAAAGGATTTTACTGCGTTTGTAAAATC
AAGACACAGTTGCACTAACCTTCACACGATGTGACTCGGCTCTGCAACAGTCATTTTGAA
GTGAGCAAACTTAATTTCAAGCAGTTGTTACATTTTAAGGACTGACCTTCACTGTACTTT
TTCTAGCAAGAACAGCTTTACTCTGCAGCGTGGAGACATGAATACCGGGTGTTAAGTGTC
TGATAAAATCCGGACCGAAAGCGTTGTCAGAACCCTCTGCAAAGCTCTGTGGACCGCTTA
CCTCCTCCCCAGCCTGGTCTCCGGGGCCCGGCGGGGGCTGGGGAACGAGACCCGGTGGGC
TGGGCCCTCGCCCGCCCCTTCCAGCACCTTCCTTCCAGCACCTTCCCAGACCTTCCCGCG
CTCCTCCTGCGGGCAGGCGGGGTCAGGCCACGGCAGACGCTCTGAGAGGACCAATGGCGG
AGCCCTTCGTGAAGCGAGAGACCCTGGAAATAATGCGACGCGACCCTAATAAAGGCCTTA
TTTTTCTTACGTAAATCCTCTCTTTACATCTGTTTGTAAACAGGTTTAAAGAACGGACCT
AGTCGTACATTTTTAGATTTTTGACGATATAGCCATTTTGGATTGTATAAGTAGCAAATG
TAACTTTTATCTTTTAAGTGGCATATTAAAAGCCAGCAGGAACTGTGTTCAGATCGCGGT
GCATTATTTATTATGCAGCTGATAGGGAGAGACACCTGTCTTCTTGCCTTTGGTTTCTGC
TTTCAATCTACTTGTACAATTCCTTGTCGCCATTCTGTTTTTCTAGTAATCTTTTGGGAA
CTTGCTGATTATGTAACAAAGTATATGTACAGTCTACTTTTGAACTATTTTTATCACAGT
GTTATTTATTGCTTTCTTTCAATAAAGTACTGAAGCGTTTTCCACTGC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               463-809, gnl|bosTau2|chr18 (51761015-51760663)
               

               
               463-809, gnl|Hg17|chr11 (69907128-69907473)
               

               
               463-809, gnl|Mm7|chr7 (140902881-140902584)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               463-809, gnl|bosTau2|chr18 (51761015-51760663)
               

               
               463-809, gnl|Hg17|chr11 (69907128-69907473)
               

               
               463-809, gnl|Mm7|chr7 (140902881-140902584)

Expressed library(ies): 19 entry(ies)

More info

Expressed library(ies): 19 entry(ies)

Help | Less info


               
               col (0.390016)
               

               
               csk (0.281492)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               mgm (0.180343)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               nje (0.16592)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.390016)
               

               
               csk (0.281492)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               mgm (0.180343)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               nje (0.16592)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)

	463-809, gnl\|bosTau2\|chr18 (51761015-51760663)
	463-809, gnl\|Hg17\|chr11 (69907128-69907473)
	463-809, gnl\|Mm7\|chr7 (140902881-140902584)

	col (0.390016)
	csk (0.281492)
	cbe (0.239234)
	mgp (0.230681)
	mgm (0.180343)
	fbs (0.175346)
	rec (0.17307)
	nje (0.16592)
	ski (0.146735)
	spl (0.143184)
	che (0.136314)
	pla (0.133672)
	nmm (0.132802)
	ova (0.129132)
	sug (0.127291)
	bla (0.124347)
	pgl (0.118483)
	ebs (0.118301)
	jca (0.11396)