Non-Coding RNA Search

Ss1.1-Pig4-TMW8054N09.5

Sequence:


               
               GGAGCGGGGCCTAGACCATGACGACTACGGGCGAGCTCGGGAGCGCAGCCGCGGCCGCAG
CTTAGAGAGAGGCCTGGACCATGACGACTATGGGCGAGCTCGGGAGAGCAGCCGCGGCCG
GAGCATTGACCCGACTTACGATCGCGCCTACAGCCCAGAGGAGGAGTACGGCCGCAGGGC
TCAGCCCGATGCCCGGTACGCCGCATCTCGGAGCCGCAGCCATGAGCACCTCCACTCCCG
CAGCCCCAGCCCAGAGCTGCAAGGGCGGCCAGACCAGCCGGACTCGGATAGGCCCATCGG
GGTCCTTCTGATGAAAAGCAAAGCGAATGAAGAGTATGGTCTCCGGCTCGGGAGTCAGAT
CTTTATAAAGGAAATGACGAGAACTGGTCTGGCAAGTAAAGATGGCAACCTGCACGAAGG
AGACATCATTCTCAAGGTGGATGGACAAGGGTTCACGCTCACAGGGTCTGCATTTCCACA
TTCAAGTGCCAACACAGTGACACTTGGTTGAGATGGGAACCAACAGTGAGACAAAGCTGG
AAGTGTGGCAGAGAGATCCTTTTTATCAGGAAAACCAGACTTGGAGATGTGTGATAGCGT
AATGGCAGTTAAAAAAAAAAAACTCAACGGCAATTTTCTTCCTTGTTTATTTAGAGTTTA
AGCTCCTATTCTCTAAAGAAAGATGAGAGGGCAAGTTAGTGGTATATGAATACTGAATAT
TTAATAGTTTCTGTAAACCTCTTCAGTCAGGGTTCCATAGTAAACCAAGCCCAACATCTT
GAGTTTGGAAGTTAAATAAATTAGCAGAGTAACTTAAGTACATTATAGCCTGTGTTTGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGCGGGGCCTAGACCATGACGACTACGGGCGAGCTCGGGAGCGCAGCCGCGGCCGCAG
CTTAGAGAGAGGCCTGGACCATGACGACTATGGGCGAGCTCGGGAGAGCAGCCGCGGCCG
GAGCATTGACCCGACTTACGATCGCGCCTACAGCCCAGAGGAGGAGTACGGCCGCAGGGC
TCAGCCCGATGCCCGGTACGCCGCATCTCGGAGCCGCAGCCATGAGCACCTCCACTCCCG
CAGCCCCAGCCCAGAGCTGCAAGGGCGGCCAGACCAGCCGGACTCGGATAGGCCCATCGG
GGTCCTTCTGATGAAAAGCAAAGCGAATGAAGAGTATGGTCTCCGGCTCGGGAGTCAGAT
CTTTATAAAGGAAATGACGAGAACTGGTCTGGCAAGTAAAGATGGCAACCTGCACGAAGG
AGACATCATTCTCAAGGTGGATGGACAAGGGTTCACGCTCACAGGGTCTGCATTTCCACA
TTCAAGTGCCAACACAGTGACACTTGGTTGAGATGGGAACCAACAGTGAGACAAAGCTGG
AAGTGTGGCAGAGAGATCCTTTTTATCAGGAAAACCAGACTTGGAGATGTGTGATAGCGT
AATGGCAGTTAAAAAAAAAAAACTCAACGGCAATTTTCTTCCTTGTTTATTTAGAGTTTA
AGCTCCTATTCTCTAAAGAAAGATGAGAGGGCAAGTTAGTGGTATATGAATACTGAATAT
TTAATAGTTTCTGTAAACCTCTTCAGTCAGGGTTCCATAGTAAACCAAGCCCAACATCTT
GAGTTTGGAAGTTAAATAAATTAGCAGAGTAACTTAAGTACATTATAGCCTGTGTTTGGG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               331-449, + strand, RNAz p=0.598608

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               331-449, + strand, RNAz p=0.598608

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               1-197, gnl|bosTau2|chr8 (19693440-19693241)
               

               
               1-197, gnl|Hg17|chr9 (69065617-69065847)
               


               
               331-829, gnl|bosTau2|chr8 (19689621-19689085)
               

               
               331-829, gnl|Hg17|chr9 (69069772-69070297)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-197, gnl|bosTau2|chr8 (19693440-19693241)
               

               
               1-197, gnl|Hg17|chr9 (69065617-69065847)
               


               
               331-829, gnl|bosTau2|chr8 (19689621-19689085)
               

               
               331-829, gnl|Hg17|chr9 (69069772-69070297)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               rec (0.17307)
               

               
               ebs (0.118301)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.17307)
               

               
               ebs (0.118301)

	1-197, gnl\|bosTau2\|chr8 (19693440-19693241)
	1-197, gnl\|Hg17\|chr9 (69065617-69065847)

	331-829, gnl\|bosTau2\|chr8 (19689621-19689085)
	331-829, gnl\|Hg17\|chr9 (69069772-69070297)