Ss1.1-Pig4-TMW8054N10.5
|
TGAGGGGAGCGAGACGCCGCGGAGGAAGTGGAGCGCCTGGGCCGAGCTGGCGTGAGGTGT
CCGTCCAGACCGACTCCACCATGTCGAAGGTTTCCTTTAAGATCACGCTGACGTCCGACC
CGCGGCTGCCGTACAAAGTGCTCAGTGTTCCTGAAAGTACACCTTTCACAGCAGTCTTAA
AGTTTGCAGCAGAAGAATTTAAAGTTCCTGCAGCAACAAGTGCAATTATTACCAATGATG
GAATAGGGATAAATCCTGCGCAGACTGCCGGAAATGTCTTTCTAAAGCATGGTTCAGAAC
TGCGAATAATTCCTAGAGATCGTGTTGGAAGTTGTTAATATCTGCTACTTGGAACATGCA
GTTACCTTGCAGGATAAATACTGGTATTGTTCTTGTAAAATTGGAATCAGCCATTTAAAA
TACTCTGAAAACACCAATAGTTGATAAAATGATGAAATGACTCCATTCCTTCTTGTTCCT
CACACTCTTCATGAGAAGAGGAAAGGCTTCACATTGCGGGTGTCATCACAACAGAAGATC
ACAGACTTTTGTTGCTACTTTGCAGCGCACACAGGTAGTTCATTGACGGTATTGGATTTT
CCAGCGGTGTTTTATAACTGGAGGATGCTTCTGATAATTCTTTCTGACAGTATTTGGAAA
TTAAAACTTAACTGAATCTTTCTATTCTTTGAGTTGAAAATATAAAAAGATTTTGGATCC
ATGTGTGGCAGTTTGCTTGATAGCATCCAACTTGGGACACAAAAATAATTGAATTACATA
TATGTGTGTGTGTGTGTGTATGCATATATATATATATGGTAATGGATCACATCAGTGAAT
ACTTAACTATCTTCTTATCATTTATCTTCCTTTTAAGTTTCAAACTTCATGTGTTGATAA
AAATTTTAATTTAACATCAAAGAACCAAAAAAATTGAATTTTTGATCTAGCCCTTATGTG
TAAAACTGGTATCCCACACTAATGAATTTTAGCTCTGATCTTGCAGAATCCAGTATGTGT
AATGCTGAGAAGTGAAAATAAAGTAGAAGCATTAATTACTGAATTAAAAAAAAAAAAAAA |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TGAGGGGAGCGAGACGCCGCGGAGGAAGTGGAGCGCCTGGGCCGAGCTGGCGTGAGGTGT
CCGTCCAGACCGACTCCACCATGTCGAAGGTTTCCTTTAAGATCACGCTGACGTCCGACC
CGCGGCTGCCGTACAAAGTGCTCAGTGTTCCTGAAAGTACACCTTTCACAGCAGTCTTAA
AGTTTGCAGCAGAAGAATTTAAAGTTCCTGCAGCAACAAGTGCAATTATTACCAATGATG
GAATAGGGATAAATCCTGCGCAGACTGCCGGAAATGTCTTTCTAAAGCATGGTTCAGAAC
TGCGAATAATTCCTAGAGATCGTGTTGGAAGTTGTTAATATCTGCTACTTGGAACATGCA
GTTACCTTGCAGGATAAATACTGGTATTGTTCTTGTAAAATTGGAATCAGCCATTTAAAA
TACTCTGAAAACACCAATAGTTGATAAAATGATGAAATGACTCCATTCCTTCTTGTTCCT
CACACTCTTCATGAGAAGAGGAAAGGCTTCACATTGCGGGTGTCATCACAACAGAAGATC
ACAGACTTTTGTTGCTACTTTGCAGCGCACACAGGTAGTTCATTGACGGTATTGGATTTT
CCAGCGGTGTTTTATAACTGGAGGATGCTTCTGATAATTCTTTCTGACAGTATTTGGAAA
TTAAAACTTAACTGAATCTTTCTATTCTTTGAGTTGAAAATATAAAAAGATTTTGGATCC
ATGTGTGGCAGTTTGCTTGATAGCATCCAACTTGGGACACAAAAATAATTGAATTACATA
TATGTGTGTGTGTGTGTGTATGCATATATATATATATGGTAATGGATCACATCAGTGAAT
ACTTAACTATCTTCTTATCATTTATCTTCCTTTTAAGTTTCAAACTTCATGTGTTGATAA
AAATTTTAATTTAACATCAAAGAACCAAAAAAATTGAATTTTTGATCTAGCCCTTATGTG
TAAAACTGGTATCCCACACTAATGAATTTTAGCTCTGATCTTGCAGAATCCAGTATGTGT
AATGCTGAGAAGTGAAAATAAAGTAGAAGCATTAATTACTGAATTAAAAAAAAAAAAAAA |
|
gi|38174609|gb|AAH61065.1| |
Protein identifier
|
gi|38174609|gb|AAH61065.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
11-775, gnl|bosTau2|chr12 (12893211-12893982) |
|
11-775, gnl|Hg17|chr17 (30728851-30728104) |
|
11-775, gnl|Mm7|chr3 (53992882-53986715) |
| |
|
296-771, gnl|bosTau2|chr10 (25542223-25542675) |
|
296-771, gnl|Hg17|chrX (144555371-144555851) |
|
296-771, gnl|Mm7|chr3 (45854553-45854102) |
| |
|
805-1066, gnl|bosTau2|chr12 (12893989-12894248) |
|
805-1066, gnl|Hg17|chr17 (30728097-30727833) |
| |
|
886-1055, gnl|bosTau2|chr10 (25542872-25543029) |
|
886-1055, gnl|Hg17|chrX (144555948-144556107) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
11-775, gnl|bosTau2|chr12 (12893211-12893982) |
|
11-775, gnl|Hg17|chr17 (30728851-30728104) |
|
11-775, gnl|Mm7|chr3 (53992882-53986715) |
| |
|
296-771, gnl|bosTau2|chr10 (25542223-25542675) |
|
296-771, gnl|Hg17|chrX (144555371-144555851) |
|
296-771, gnl|Mm7|chr3 (45854553-45854102) |
| |
|
805-1066, gnl|bosTau2|chr12 (12893989-12894248) |
|
805-1066, gnl|Hg17|chr17 (30728097-30727833) |
| |
|
886-1055, gnl|bosTau2|chr10 (25542872-25543029) |
|
886-1055, gnl|Hg17|chrX (144555948-144556107) |
|
bfe (0.599431) |
|
pro (0.512033) |
|
mga (0.480615) |
|
hea (0.408998) |
|
kid (0.389206) |
|
bla (0.373042) |
|
mgm (0.360685) |
|
rec (0.346141) |
|
spc (0.340097) |
|
cki (0.330469) |
|
tbr (0.308356) |
|
lun (0.300978) |
|
ski (0.29347) |
|
cte (0.29274) |
|
lin (0.291206) |
|
ssp (0.271039) |
|
cbe (0.239234) |
|
pan (0.23596) |
|
mgp (0.230681) |
|
fcc (0.197785) |
|
nlu (0.191681) |
|
sto (0.179824) |
|
ill (0.175593) |
|
duo (0.172801) |
|
fhi (0.169578) |
|
nje (0.16592) |
|
nco (0.161734) |
|
fco (0.157208) |
|
spl (0.143184) |
|
pty (0.142714) |
|
lnt (0.142308) |
|
cst (0.140036) |
|
ste (0.135208) |
|
lyg (0.133103) |
|
ret (0.128733) |
|
sug (0.127291) |
|
thg (0.126791) |
|
ese (0.126502) |
|
eru (0.120048) |
|
clu (0.119646) |
|
cbl (0.114797) |
|
cty (0.10408) |
|
bfe (0.599431) |
|
pro (0.512033) |
|
mga (0.480615) |
|
hea (0.408998) |
|
kid (0.389206) |
|
bla (0.373042) |
|
mgm (0.360685) |
|
rec (0.346141) |
|
spc (0.340097) |
|
cki (0.330469) |
|
tbr (0.308356) |
|
lun (0.300978) |
|
ski (0.29347) |
|
cte (0.29274) |
|
lin (0.291206) |
|
ssp (0.271039) |
|
cbe (0.239234) |
|
pan (0.23596) |
|
mgp (0.230681) |
|
fcc (0.197785) |
|
nlu (0.191681) |
|
sto (0.179824) |
|
ill (0.175593) |
|
duo (0.172801) |
|
fhi (0.169578) |
|
nje (0.16592) |
|
nco (0.161734) |
|
fco (0.157208) |
|
spl (0.143184) |
|
pty (0.142714) |
|
lnt (0.142308) |
|
cst (0.140036) |
|
ste (0.135208) |
|
lyg (0.133103) |
|
ret (0.128733) |
|
sug (0.127291) |
|
thg (0.126791) |
|
ese (0.126502) |
|
eru (0.120048) |
|
clu (0.119646) |
|
cbl (0.114797) |
|
cty (0.10408) |
