Ss1.1-Pig4-TMW8054N11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCTCTTCTTGGTGCTGTGGCTGATGCATTTCATGGCCATCATCTACACCCGATTACACCT CAACAAGAAGGCAACGGACAAACAGCCATATAGCAAGCTCCCAGGGGTGTCTCTTCTGAA ACCACTGAAAGGAGTAGATCCTAACCTGATCAACAACTTGGAAACGTTCTTTGAATTGGA TTATCCCAAATATGAAGTGCTCCTCTGTGTCCAAGATCATGATGATCCGGCCATTGATGT ATGTAAGAAGCTTCTTGGAAAATATCCAAATGTCGATGCTAGATTGTTCATAGGTGGCAA AAAGGTTGGCATTAATCCTAAAATTAATAATTTAATGCCAGGATATGAAGTTGCAAAGTA TGATCTTATATGGATTTGTGATAGTGGAATAAGAGTGATTCCAGACACACTCACAGACAT GGTTAACCAGATGACAGAGAAAGTGGGCCTGGTCCACGGGCTGCCATATGTAGCAGACAG ACAGGGCTTTGCCGCCACATTAGAACAGGTGTATTTTGGAACCTCTCATCCAAGGTCCTA TATCTCTGCCAATGTAACTGGTTTCAAATGTGTGACGGGAATGTCTTGTTTAATGAGAAA GGATGTATTAGATCAAGCAGGAGGGCTTATAGCTTTTGCTCAATACATTGCTGAAGATTA CTTTATGGCTAAAGCAATAGCTGACCGAGGCTGGAGGTTTGCCATGTCCACTCAAGTTGC AATGCAAAACTCCGGTTCATATTCGATTTCTCAATTTCAATCCAGAATGATCAGGTGGAC CAAATTGAGAATTAACATGCTTCCTGCTACAATAATTTGTGAGCCAATTTCAGAATGCTT CGTTGCCAGTTTAATTATTGGATGGGCAGCCCACCATGTATTTAGATGGGATATTATGGT ATTTTTCATGTGTCATTGCCTGGCGTGGTTTATATTTGACTACATTCAACTCAGGGGTGT CCAGGGCGGCGCACTGTGTTTTTCAAAACTTGATTACGCGGTCGCTTGGTTCATCCGTGA ATCCATGACAATATACATTTTTTTGTCGGCGTTATGGGACCCTACAATAAGCTGGAGAAC TGGCCGCTACAGACTGCGCTGTGGAGGCACAGCCGAGGAGATCCTGGATGTATAACTGCA ACTCTGTGACTGTACATAAAGGAAAAAAGAGAAGTATTATAAATTATGTTTATATAAATG CTTTTAAAAAATCTACCTTCAGTAGTTTTATCACATGTATGTTTTGGTATCTGTTCTTTA ATTTATTTTGCATGGCACTTGCATCCGTGAAAAGGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCTCTTCTTGGTGCTGTGGCTGATGCATTTCATGGCCATCATCTACACCCGATTACACCT CAACAAGAAGGCAACGGACAAACAGCCATATAGCAAGCTCCCAGGGGTGTCTCTTCTGAA ACCACTGAAAGGAGTAGATCCTAACCTGATCAACAACTTGGAAACGTTCTTTGAATTGGA TTATCCCAAATATGAAGTGCTCCTCTGTGTCCAAGATCATGATGATCCGGCCATTGATGT ATGTAAGAAGCTTCTTGGAAAATATCCAAATGTCGATGCTAGATTGTTCATAGGTGGCAA AAAGGTTGGCATTAATCCTAAAATTAATAATTTAATGCCAGGATATGAAGTTGCAAAGTA TGATCTTATATGGATTTGTGATAGTGGAATAAGAGTGATTCCAGACACACTCACAGACAT GGTTAACCAGATGACAGAGAAAGTGGGCCTGGTCCACGGGCTGCCATATGTAGCAGACAG ACAGGGCTTTGCCGCCACATTAGAACAGGTGTATTTTGGAACCTCTCATCCAAGGTCCTA TATCTCTGCCAATGTAACTGGTTTCAAATGTGTGACGGGAATGTCTTGTTTAATGAGAAA GGATGTATTAGATCAAGCAGGAGGGCTTATAGCTTTTGCTCAATACATTGCTGAAGATTA CTTTATGGCTAAAGCAATAGCTGACCGAGGCTGGAGGTTTGCCATGTCCACTCAAGTTGC AATGCAAAACTCCGGTTCATATTCGATTTCTCAATTTCAATCCAGAATGATCAGGTGGAC CAAATTGAGAATTAACATGCTTCCTGCTACAATAATTTGTGAGCCAATTTCAGAATGCTT CGTTGCCAGTTTAATTATTGGATGGGCAGCCCACCATGTATTTAGATGGGATATTATGGT ATTTTTCATGTGTCATTGCCTGGCGTGGTTTATATTTGACTACATTCAACTCAGGGGTGT CCAGGGCGGCGCACTGTGTTTTTCAAAACTTGATTACGCGGTCGCTTGGTTCATCCGTGA ATCCATGACAATATACATTTTTTTGTCGGCGTTATGGGACCCTACAATAAGCTGGAGAAC TGGCCGCTACAGACTGCGCTGTGGAGGCACAGCCGAGGAGATCCTGGATGTATAACTGCA ACTCTGTGACTGTACATAAAGGAAAAAAGAGAAGTATTATAAATTATGTTTATATAAATG CTTTTAAAAAATCTACCTTCAGTAGTTTTATCACATGTATGTTTTGGTATCTGTTCTTTA ATTTATTTTGCATGGCACTTGCATCCGTGAAAAGGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 568-687, + strand, RNAz p=0.738181 | |
| 1096-1211, + strand, RNAz p=0.995366 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 568-687, + strand, RNAz p=0.738181 | |
| 1096-1211, + strand, RNAz p=0.995366 |
| Aligned organism(s): 71 entry(ies) | More info |
| Aligned organism(s): 71 entry(ies) | Help | Less info |
| 49-189, gnl|bosTau2|chr8 (55812616-55812756) | |
| 49-189, gnl|canFam2|chr11 (69486911-69487119) | |
| 49-189, gnl|danRer3|chr10 (2649276-2649464) | |
| 49-189, gnl|dasNov1|scaffold_20446 (7894-8113) | |
| 49-189, gnl|echTel1|scaffold_177703 (343-119) | |
| 49-189, gnl|fr1|chrUn (269605137-269604972) | |
| 49-189, gnl|galGal2|chrZ (32293189-32292964) | |
| 49-189, gnl|hg17|chr9 (111756385-111756607) | |
| 49-189, gnl|Hg17|chr9 (111756440-111756580) | |
| 49-189, gnl|loxAfr1|scaffold_6542 (41988-41764) | |
| 49-189, gnl|mm7|chr4 (59249093-59249322) | |
| 49-189, gnl|Mm7|chr4 (59249150-59249290) | |
| 49-189, gnl|monDom2|scaffold_19 (35369656-35369439) | |
| 49-189, gnl|panTro1|chr11 (96275998-96276220) | |
| 49-189, gnl|rheMac2|chr15 (24198385-24198163) | |
| 49-189, gnl|rn3|chr5 (77285292-77285495) | |
| 49-189, gnl|tetNig1|chrUn_random (53559704-53559551) | |
| 49-189, gnl|xenTro1|scaffold_196 (857313-857526) | |
| 291-395, gnl|bosTau2|chr8 (55822115-55822219) | |
| 291-395, gnl|canFam2|chr11 (69495526-69495666) | |
| 291-395, gnl|danRer3|chr10 (19619015-19619127) | |
| 291-395, gnl|dasNov1|scaffold_20446 (16036-16176) | |
| 291-395, gnl|echTel1|scaffold_315168 (91252-91391) | |
| 291-395, gnl|fr1|chrUn (269604669-269604560) | |
| 291-395, gnl|galGal2|chrZ (32288708-32288595) | |
| 291-395, gnl|hg17|chr9 (111766581-111766721) | |
| 291-395, gnl|Hg17|chr9 (111766609-111766713) | |
| 291-395, gnl|mm7|chr4 (59254517-59254657) | |
| 291-395, gnl|Mm7|chr4 (59254545-59254649) | |
| 291-395, gnl|monDom2|scaffold_19 (35359102-35358962) | |
| 291-395, gnl|panTro1|chr11 (96285859-96285999) | |
| 291-395, gnl|rheMac2|chr15 (24188283-24188143) | |
| 291-395, gnl|rn3|chr5 (77290848-77290988) | |
| 291-395, gnl|tetNig1|chrUn_random (53559279-53559167) | |
| 291-395, gnl|xenTro1|scaffold_196 (866919-867071) | |
| 506-687, gnl|bosTau2|chr8 (55827215-55827396) | |
| 506-687, gnl|canFam2|chr11 (69499873-69499995) | |
| 506-687, gnl|danRer3|chr10 (19639154-19639030) | |
| 506-687, gnl|dasNov1|scaffold_71537 (42868-42986) | |
| 506-687, gnl|echTel1|scaffold_318174 (1103-1221) | |
| 506-687, gnl|fr1|chrUn (269604273-269604162) | |
| 506-687, gnl|galGal2|chrZ (32286397-32286279) | |
| 506-687, gnl|hg17|chr9 (111771324-111771443) | |
| 506-687, gnl|Hg17|chr9 (111771332-111771513) | |
| 506-687, gnl|loxAfr1|scaffold_135713 (4037-3919) | |
| 506-687, gnl|mm7|chr4 (59258414-59258533) | |
| 506-687, gnl|Mm7|chr4 (59258422-59258603) | |
| 506-687, gnl|monDom2|scaffold_19 (35352295-35352177) | |
| 506-687, gnl|panTro1|chr11 (96290593-96290712) | |
| 506-687, gnl|rheMac2|chr15 (24183182-24183063) | |
| 506-687, gnl|rn3|chr5 (77294680-77294798) | |
| 506-687, gnl|xenTro1|scaffold_196 (868860-868979) | |
| 961-1294, gnl|bosTau2|chr8 (55831334-55831668) | |
| 961-1294, gnl|canFam2|chr11 (69502677-69502903) | |
| 961-1294, gnl|danRer3|chr10 (19633464-19633251) | |
| 961-1294, gnl|dasNov1|scaffold_15068 (5981-5755) | |
| 961-1294, gnl|echTel1|scaffold_318174 (3718-3938) | |
| 961-1294, gnl|fr1|chrUn (269603392-269603196) | |
| 961-1294, gnl|galGal2|chrZ (32283731-32283494) | |
| 961-1294, gnl|hg17|chr9 (111774644-111774870) | |
| 961-1294, gnl|Hg17|chr9 (111774658-111774986) | |
| 961-1294, gnl|loxAfr1|scaffold_6542 (21929-21703) | |
| 961-1294, gnl|mm7|chr4 (59261594-59261822) | |
| 961-1294, gnl|Mm7|chr4 (59261608-59261940) | |
| 961-1294, gnl|monDom2|scaffold_19 (35348279-35348038) | |
| 961-1294, gnl|oryCun1|scaffold_203887 (68446-68673) | |
| 961-1294, gnl|panTro1|chr11 (96293885-96294111) | |
| 961-1294, gnl|rheMac2|chr15 (24179857-24179631) | |
| 961-1294, gnl|rn3|chr5 (77298172-77298398) | |
| 961-1294, gnl|tetNig1|chrUn_random (53557805-53557579) | |
| 961-1294, gnl|xenTro1|scaffold_196 (871954-872202) |
| Aligned organism(s): 71 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 49-189, gnl|bosTau2|chr8 (55812616-55812756) | |
| 49-189, gnl|canFam2|chr11 (69486911-69487119) | |
| 49-189, gnl|danRer3|chr10 (2649276-2649464) | |
| 49-189, gnl|dasNov1|scaffold_20446 (7894-8113) | |
| 49-189, gnl|echTel1|scaffold_177703 (343-119) | |
| 49-189, gnl|fr1|chrUn (269605137-269604972) | |
| 49-189, gnl|galGal2|chrZ (32293189-32292964) | |
| 49-189, gnl|hg17|chr9 (111756385-111756607) | |
| 49-189, gnl|Hg17|chr9 (111756440-111756580) | |
| 49-189, gnl|loxAfr1|scaffold_6542 (41988-41764) | |
| 49-189, gnl|mm7|chr4 (59249093-59249322) | |
| 49-189, gnl|Mm7|chr4 (59249150-59249290) | |
| 49-189, gnl|monDom2|scaffold_19 (35369656-35369439) | |
| 49-189, gnl|panTro1|chr11 (96275998-96276220) | |
| 49-189, gnl|rheMac2|chr15 (24198385-24198163) | |
| 49-189, gnl|rn3|chr5 (77285292-77285495) | |
| 49-189, gnl|tetNig1|chrUn_random (53559704-53559551) | |
| 49-189, gnl|xenTro1|scaffold_196 (857313-857526) | |
| 291-395, gnl|bosTau2|chr8 (55822115-55822219) | |
| 291-395, gnl|canFam2|chr11 (69495526-69495666) | |
| 291-395, gnl|danRer3|chr10 (19619015-19619127) | |
| 291-395, gnl|dasNov1|scaffold_20446 (16036-16176) | |
| 291-395, gnl|echTel1|scaffold_315168 (91252-91391) | |
| 291-395, gnl|fr1|chrUn (269604669-269604560) | |
| 291-395, gnl|galGal2|chrZ (32288708-32288595) | |
| 291-395, gnl|hg17|chr9 (111766581-111766721) | |
| 291-395, gnl|Hg17|chr9 (111766609-111766713) | |
| 291-395, gnl|mm7|chr4 (59254517-59254657) | |
| 291-395, gnl|Mm7|chr4 (59254545-59254649) | |
| 291-395, gnl|monDom2|scaffold_19 (35359102-35358962) | |
| 291-395, gnl|panTro1|chr11 (96285859-96285999) | |
| 291-395, gnl|rheMac2|chr15 (24188283-24188143) | |
| 291-395, gnl|rn3|chr5 (77290848-77290988) | |
| 291-395, gnl|tetNig1|chrUn_random (53559279-53559167) | |
| 291-395, gnl|xenTro1|scaffold_196 (866919-867071) | |
| 506-687, gnl|bosTau2|chr8 (55827215-55827396) | |
| 506-687, gnl|canFam2|chr11 (69499873-69499995) | |
| 506-687, gnl|danRer3|chr10 (19639154-19639030) | |
| 506-687, gnl|dasNov1|scaffold_71537 (42868-42986) | |
| 506-687, gnl|echTel1|scaffold_318174 (1103-1221) | |
| 506-687, gnl|fr1|chrUn (269604273-269604162) | |
| 506-687, gnl|galGal2|chrZ (32286397-32286279) | |
| 506-687, gnl|hg17|chr9 (111771324-111771443) | |
| 506-687, gnl|Hg17|chr9 (111771332-111771513) | |
| 506-687, gnl|loxAfr1|scaffold_135713 (4037-3919) | |
| 506-687, gnl|mm7|chr4 (59258414-59258533) | |
| 506-687, gnl|Mm7|chr4 (59258422-59258603) | |
| 506-687, gnl|monDom2|scaffold_19 (35352295-35352177) | |
| 506-687, gnl|panTro1|chr11 (96290593-96290712) | |
| 506-687, gnl|rheMac2|chr15 (24183182-24183063) | |
| 506-687, gnl|rn3|chr5 (77294680-77294798) | |
| 506-687, gnl|xenTro1|scaffold_196 (868860-868979) | |
| 961-1294, gnl|bosTau2|chr8 (55831334-55831668) | |
| 961-1294, gnl|canFam2|chr11 (69502677-69502903) | |
| 961-1294, gnl|danRer3|chr10 (19633464-19633251) | |
| 961-1294, gnl|dasNov1|scaffold_15068 (5981-5755) | |
| 961-1294, gnl|echTel1|scaffold_318174 (3718-3938) | |
| 961-1294, gnl|fr1|chrUn (269603392-269603196) | |
| 961-1294, gnl|galGal2|chrZ (32283731-32283494) | |
| 961-1294, gnl|hg17|chr9 (111774644-111774870) | |
| 961-1294, gnl|Hg17|chr9 (111774658-111774986) | |
| 961-1294, gnl|loxAfr1|scaffold_6542 (21929-21703) | |
| 961-1294, gnl|mm7|chr4 (59261594-59261822) | |
| 961-1294, gnl|Mm7|chr4 (59261608-59261940) | |
| 961-1294, gnl|monDom2|scaffold_19 (35348279-35348038) | |
| 961-1294, gnl|oryCun1|scaffold_203887 (68446-68673) | |
| 961-1294, gnl|panTro1|chr11 (96293885-96294111) | |
| 961-1294, gnl|rheMac2|chr15 (24179857-24179631) | |
| 961-1294, gnl|rn3|chr5 (77298172-77298398) | |
| 961-1294, gnl|tetNig1|chrUn_random (53557805-53557579) | |
| 961-1294, gnl|xenTro1|scaffold_196 (871954-872202) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| amn (0.417711) | |
| sin (0.349895) | |
| ecc (0.23007) | |
| spc (0.226732) | |
| cmu (0.186393) | |
| csk (0.140746) | |
| pla (0.133672) | |
| bla (0.124347) | |
| eje (0.0988338) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (0.417711) | |
| sin (0.349895) | |
| ecc (0.23007) | |
| spc (0.226732) | |
| cmu (0.186393) | |
| csk (0.140746) | |
| pla (0.133672) | |
| bla (0.124347) | |
| eje (0.0988338) |