Non-Coding RNA Search

Ss1.1-Pig4-TMW8054N13.3

Sequence:


               
               GGAATCTTTCGATGAGGGAAGCAGTCACTAATTTGTTTTTAAACTCCATTATTCTTGGCA
TTATTCCAGCGTGCTTTGTTTTAAGAAGCCATGAAGGGAATGTCAGATTCTTATTTCTTG
GTATACATAATTTATCGCCATAAAGAAACAATGCAAACATTAAGCAAGCAGAGGACTTGC
CTCTGGCCCATTTTTTTTTTTCAAACTAAAAAATTTTTAACAGAATTTTTGACCTTGGGA
AATATTTTGCGTACATTACCAAGGGGAGGTTTCTTTCACCTCAAGGCATAAGCAGACTTT
TTTTTTTGGACAGTGGTGAATTTATTTATTGCAACAAAACAGAGAGGTTACCCATGATTC
AAAATCTAAACAATTTCAGTTCTGCCTGTGACTGTGGTGTGTGTCATTCAGGATATAGCT
TACTTTAGTCTAGCCTCTGCTTACTTAGGTTTCTTCTTTGACATAATGGTAGAATATTTA
GATTTATTTAAGTTCTTAATGCCAACAGTTTAAAAAATTTAAAACATTTAATGAACTGTA
AAATACAATAAGGTCTTGGACATGCAGATAGAAACCTATGGAGCATTCCCAGGATATTTT
ATTGGTCATGGCTCTGTTAATCACAATTCCTTGTATAGCTTGTATTTTGATTTAGTTTAT
ATTCTGCTTATCTGTACTGTGTTCTTATATATGAGAAAGCACAAGTGTAAAAGAGGTCAT
ACACATTTAAAATCTGTCACAGGAAATAGCCTGCATTGGTGTGTGTTACAGTATTTTGCT
TAAAGAAGGCCTCAATGCTGAATATTGCTATAAGTAGTTACAAGCAAATTTGGGCCATTG
TATGTGTTTATCTGTGTCAAGTTTTTCTGGTAATAAGAAGTAATTTTACACATATTTTAA
TCCTGTGAAAGACTCTAGGTAGAGAAAAGCAAGAAGACTTAACCTTCAACAAATGTTATT
TTTGGAAACATGATTTTTGTCATTAAATGTTATATTATTTCACATATATAAAACAGATGT
TATGTAAGAATGTTGTATATTTTAACATAATTCCATTTAGAGAGATTATCTAGATTCATT
AATTTTCATAGTGCCTTTTTCACATGAGTCAGCTGGAAAGTCTGCAATAAACAGTATTTG
CTGTATGTTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAATCTTTCGATGAGGGAAGCAGTCACTAATTTGTTTTTAAACTCCATTATTCTTGGCA
TTATTCCAGCGTGCTTTGTTTTAAGAAGCCATGAAGGGAATGTCAGATTCTTATTTCTTG
GTATACATAATTTATCGCCATAAAGAAACAATGCAAACATTAAGCAAGCAGAGGACTTGC
CTCTGGCCCATTTTTTTTTTTCAAACTAAAAAATTTTTAACAGAATTTTTGACCTTGGGA
AATATTTTGCGTACATTACCAAGGGGAGGTTTCTTTCACCTCAAGGCATAAGCAGACTTT
TTTTTTTGGACAGTGGTGAATTTATTTATTGCAACAAAACAGAGAGGTTACCCATGATTC
AAAATCTAAACAATTTCAGTTCTGCCTGTGACTGTGGTGTGTGTCATTCAGGATATAGCT
TACTTTAGTCTAGCCTCTGCTTACTTAGGTTTCTTCTTTGACATAATGGTAGAATATTTA
GATTTATTTAAGTTCTTAATGCCAACAGTTTAAAAAATTTAAAACATTTAATGAACTGTA
AAATACAATAAGGTCTTGGACATGCAGATAGAAACCTATGGAGCATTCCCAGGATATTTT
ATTGGTCATGGCTCTGTTAATCACAATTCCTTGTATAGCTTGTATTTTGATTTAGTTTAT
ATTCTGCTTATCTGTACTGTGTTCTTATATATGAGAAAGCACAAGTGTAAAAGAGGTCAT
ACACATTTAAAATCTGTCACAGGAAATAGCCTGCATTGGTGTGTGTTACAGTATTTTGCT
TAAAGAAGGCCTCAATGCTGAATATTGCTATAAGTAGTTACAAGCAAATTTGGGCCATTG
TATGTGTTTATCTGTGTCAAGTTTTTCTGGTAATAAGAAGTAATTTTACACATATTTTAA
TCCTGTGAAAGACTCTAGGTAGAGAAAAGCAAGAAGACTTAACCTTCAACAAATGTTATT
TTTGGAAACATGATTTTTGTCATTAAATGTTATATTATTTCACATATATAAAACAGATGT
TATGTAAGAATGTTGTATATTTTAACATAATTCCATTTAGAGAGATTATCTAGATTCATT
AATTTTCATAGTGCCTTTTTCACATGAGTCAGCTGGAAAGTCTGCAATAAACAGTATTTG
CTGTATGTTAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               782-895, + strand, RNAz p=0.623727

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               782-895, + strand, RNAz p=0.623727

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_004447, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_004447, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-276, gnl|bosTau2|chrX (32211361-32211631)
               

               
               1-276, gnl|Hg17|chr12 (15665548-15665265)
               

               
               1-276, gnl|Mm7|chr6 (137523801-137523325)
               


               
               280-1151, gnl|bosTau2|chrX (32211658-32212528)
               

               
               280-1151, gnl|Hg17|chr12 (15665238-15664363)
               

               
               280-1151, gnl|Mm7|chr6 (137523299-137522449)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-276, gnl|bosTau2|chrX (32211361-32211631)
               

               
               1-276, gnl|Hg17|chr12 (15665548-15665265)
               

               
               1-276, gnl|Mm7|chr6 (137523801-137523325)
               


               
               280-1151, gnl|bosTau2|chrX (32211658-32212528)
               

               
               280-1151, gnl|Hg17|chr12 (15665238-15664363)
               

               
               280-1151, gnl|Mm7|chr6 (137523299-137522449)

Expressed library(ies): 19 entry(ies)

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Expressed library(ies): 19 entry(ies)

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               lin (1.16482)
               

               
               ret (1.1586)
               

               
               kid (0.648677)
               

               
               tra (0.61546)
               

               
               cbe (0.478469)
               

               
               liv (0.438853)
               

               
               sin (0.349895)
               

               
               rec (0.346141)
               

               
               fce (0.271592)
               

               
               mgp (0.230681)
               

               
               tes (0.207814)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               fco (0.157208)
               

               
               lnt (0.142308)
               

               
               eru (0.120048)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (1.16482)
               

               
               ret (1.1586)
               

               
               kid (0.648677)
               

               
               tra (0.61546)
               

               
               cbe (0.478469)
               

               
               liv (0.438853)
               

               
               sin (0.349895)
               

               
               rec (0.346141)
               

               
               fce (0.271592)
               

               
               mgp (0.230681)
               

               
               tes (0.207814)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               fco (0.157208)
               

               
               lnt (0.142308)
               

               
               eru (0.120048)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

	1-276, gnl\|bosTau2\|chrX (32211361-32211631)
	1-276, gnl\|Hg17\|chr12 (15665548-15665265)
	1-276, gnl\|Mm7\|chr6 (137523801-137523325)

	280-1151, gnl\|bosTau2\|chrX (32211658-32212528)
	280-1151, gnl\|Hg17\|chr12 (15665238-15664363)
	280-1151, gnl\|Mm7\|chr6 (137523299-137522449)

	lin (1.16482)
	ret (1.1586)
	kid (0.648677)
	tra (0.61546)
	cbe (0.478469)
	liv (0.438853)
	sin (0.349895)
	rec (0.346141)
	fce (0.271592)
	mgp (0.230681)
	tes (0.207814)
	aor (0.195274)
	col (0.195008)
	nlu (0.191681)
	fco (0.157208)
	lnt (0.142308)
	eru (0.120048)
	jca (0.11396)
	jej (0.0989218)