Ss1.1-Pig4-TMW8054N14.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGCGCCGCGGCTCGAGCTTGCCGCATGCAGAAGTTCCCGGGCCACTGATTGAACTCACGT CACAGCACTCACAACATGGGATCCTGAGCCACTAGGGAACTCCTAATGTTATTTTGAGCT GTAGCTTTACTTAATAAATGTAATAAAATGTGTATTTCTCCTTTTTAGAACATAAAGTTG ATTTGCAGTTATTAGAATTTTGTAAAAACATCTTTCAAGAGACTACATAACTTTAAAAAA TATTGAATTTTTTTTAAGTTTGATCTTTTATTTTAGGACATATTGATGCATTTACTTCAA AGCTTTTCCTGCTGGAAGAAATTACCTCAGAAGAATTAAAAGAAAAACTTTCAGCACTTA AGATTTCAAGTTTATTTAACATCCTCCAACACATTCTAAGAAAATTAAGCAGCTTGCAGG AAGGTTCCTACTTGTTGTCTCATGCAGCAGAAGATTCTTCACTCCTGATCTACAAGACGT CTGATGGAAAAGTTACTAGAACGGCATACAATTTGCATAAAACACACTGTGGCCTTCCTG GTGTACCTTCCAGTCTCTCAGTTCCCTGGGTCCCATTAGATCCCAGTCTCTTATTACCGT ATCATATCCATCATGGACGAATTCCTTGTACTTTTCCACCTAAGTCACTAGGCCCCACAA CACAACAAAAGATTGGTGGAACAAGAATGCCTACCCGCAGCCGCAGGAATTCAGTTTCCA TGGAAACCAAAAGCCTGCCTGCTCAGCAAGTTGAAAATGAAGGAGTGGCTCCAAGTAAAA GAAAAATAACTTAAGGACTGTACCTTGGAAAACGAAGAAAAAACATTATAACAACATTCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGCGCCGCGGCTCGAGCTTGCCGCATGCAGAAGTTCCCGGGCCACTGATTGAACTCACGT CACAGCACTCACAACATGGGATCCTGAGCCACTAGGGAACTCCTAATGTTATTTTGAGCT GTAGCTTTACTTAATAAATGTAATAAAATGTGTATTTCTCCTTTTTAGAACATAAAGTTG ATTTGCAGTTATTAGAATTTTGTAAAAACATCTTTCAAGAGACTACATAACTTTAAAAAA TATTGAATTTTTTTTAAGTTTGATCTTTTATTTTAGGACATATTGATGCATTTACTTCAA AGCTTTTCCTGCTGGAAGAAATTACCTCAGAAGAATTAAAAGAAAAACTTTCAGCACTTA AGATTTCAAGTTTATTTAACATCCTCCAACACATTCTAAGAAAATTAAGCAGCTTGCAGG AAGGTTCCTACTTGTTGTCTCATGCAGCAGAAGATTCTTCACTCCTGATCTACAAGACGT CTGATGGAAAAGTTACTAGAACGGCATACAATTTGCATAAAACACACTGTGGCCTTCCTG GTGTACCTTCCAGTCTCTCAGTTCCCTGGGTCCCATTAGATCCCAGTCTCTTATTACCGT ATCATATCCATCATGGACGAATTCCTTGTACTTTTCCACCTAAGTCACTAGGCCCCACAA CACAACAAAAGATTGGTGGAACAAGAATGCCTACCCGCAGCCGCAGGAATTCAGTTTCCA TGGAAACCAAAAGCCTGCCTGCTCAGCAAGTTGAAAATGAAGGAGTGGCTCCAAGTAAAA GAAAAATAACTTAAGGACTGTACCTTGGAAAACGAAGAAAAAACATTATAACAACATTCA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 99-362, gnl|bosTau2|chr10 (36955176-36955454) | |
| 99-362, gnl|Hg17|chr15 (58515904-58515633) | |
| 99-362, gnl|Mm7|chr9 (69457155-69457420) | |
| 411-676, gnl|bosTau2|chr10 (36959783-36960048) | |
| 411-676, gnl|canFam2|chr30 (28242498-28242241) | |
| 411-676, gnl|canFam2|chr30 (28242241-28242496) | |
| 411-676, gnl|dasNov1|scaffold_9332 (11483-11226) | |
| 411-676, gnl|dasNov1|scaffold_9332 (11226-11481) | |
| 411-676, gnl|echTel1|scaffold_316172 (44196-44448) | |
| 411-676, gnl|echTel1|scaffold_316172 (44452-44198) | |
| 411-676, gnl|galGal2|chr10 (5851411-5851659) | |
| 411-676, gnl|galGal2|chr10 (5851668-5851413) | |
| 411-676, gnl|Hg17|chr15 (58508180-58507915) | |
| 411-676, gnl|hg17|chr3 (89082385-89082638) | |
| 411-676, gnl|hg17|chr4 (189683904-189684159) | |
| 411-676, gnl|loxAfr1|scaffold_891 (15531-15784) | |
| 411-676, gnl|loxAfr1|scaffold_891 (15788-15533) | |
| 411-676, gnl|mm7|chr9 (69459993-69460245) | |
| 411-676, gnl|mm7|chr9 (69460250-69459995) | |
| 411-676, gnl|Mm7|chr9 (69459992-69460257) | |
| 411-676, gnl|monDom2|scaffold_12 (54187809-54188066) | |
| 411-676, gnl|monDom2|scaffold_12 (54188066-54187811) | |
| 411-676, gnl|oryCun1|scaffold_205746 (67649-67900) | |
| 411-676, gnl|oryCun1|scaffold_205746 (67906-67651) | |
| 411-676, gnl|panTro1|chr2 (91470879-91471132) | |
| 411-676, gnl|panTro1|chr3 (207931305-207931560) | |
| 411-676, gnl|rheMac2|chr2 (13171277-13171531) | |
| 411-676, gnl|rheMac2|chr5 (180531759-180532014) | |
| 411-676, gnl|rn3|chr8 (73891495-73891748) | |
| 411-676, gnl|rn3|chr8 (73891752-73891497) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 99-362, gnl|bosTau2|chr10 (36955176-36955454) | |
| 99-362, gnl|Hg17|chr15 (58515904-58515633) | |
| 99-362, gnl|Mm7|chr9 (69457155-69457420) | |
| 411-676, gnl|bosTau2|chr10 (36959783-36960048) | |
| 411-676, gnl|canFam2|chr30 (28242498-28242241) | |
| 411-676, gnl|canFam2|chr30 (28242241-28242496) | |
| 411-676, gnl|dasNov1|scaffold_9332 (11483-11226) | |
| 411-676, gnl|dasNov1|scaffold_9332 (11226-11481) | |
| 411-676, gnl|echTel1|scaffold_316172 (44196-44448) | |
| 411-676, gnl|echTel1|scaffold_316172 (44452-44198) | |
| 411-676, gnl|galGal2|chr10 (5851411-5851659) | |
| 411-676, gnl|galGal2|chr10 (5851668-5851413) | |
| 411-676, gnl|Hg17|chr15 (58508180-58507915) | |
| 411-676, gnl|hg17|chr3 (89082385-89082638) | |
| 411-676, gnl|hg17|chr4 (189683904-189684159) | |
| 411-676, gnl|loxAfr1|scaffold_891 (15531-15784) | |
| 411-676, gnl|loxAfr1|scaffold_891 (15788-15533) | |
| 411-676, gnl|mm7|chr9 (69459993-69460245) | |
| 411-676, gnl|mm7|chr9 (69460250-69459995) | |
| 411-676, gnl|Mm7|chr9 (69459992-69460257) | |
| 411-676, gnl|monDom2|scaffold_12 (54187809-54188066) | |
| 411-676, gnl|monDom2|scaffold_12 (54188066-54187811) | |
| 411-676, gnl|oryCun1|scaffold_205746 (67649-67900) | |
| 411-676, gnl|oryCun1|scaffold_205746 (67906-67651) | |
| 411-676, gnl|panTro1|chr2 (91470879-91471132) | |
| 411-676, gnl|panTro1|chr3 (207931305-207931560) | |
| 411-676, gnl|rheMac2|chr2 (13171277-13171531) | |
| 411-676, gnl|rheMac2|chr5 (180531759-180532014) | |
| 411-676, gnl|rn3|chr8 (73891495-73891748) | |
| 411-676, gnl|rn3|chr8 (73891752-73891497) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| tes (0.207814) | |
| lnt (0.142308) | |
| ret (0.128733) | |
| ese (0.126502) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.207814) | |
| lnt (0.142308) | |
| ret (0.128733) | |
| ese (0.126502) |