Non-Coding RNA Search

Ss1.1-Pig4-TMW8054N15.5

Sequence:


               
               CAGATGAAACAGTCCCGTGGGGCTGACTTGAAGAATGGGGCTCTAGTGGTTTATGAGATG
GTTCCCTCCAACAGTCCGCCCTATGTCTGCTATGTCACCTTGCCTGGGGGAAGTTGCTTT
GGGAGTTTCCAGTTTTGCCCCACAAAAGCCGAAGCCCGGAGGAGTGCTGCAAAGATTGCT
TTAATGAACTCTGTGTTTAATGAACATCCTTCCCGAAGAATCACCGATGAGTTCATTGAG
AAGAGTGTCTCTGAGGCCCTGGCATCTTTCAATGGCAACAGGGAGGAAGCTGACAATCCA
AATACAGGGATTGGCGCCTTCCGATTCATGTTGGAATCCAACAAGGGCAAGTCAATGTTG
GAGTTCCAGGAGCTAATGACAGTTTTTCAACTGCTGCACTGGAATGGCAGCCTTAAGGCC
ATGAGGGAAAGGCAGTGCTCTCGGCAGGAAGTGTTGGCTCATTATTCACACCGAGCCCTA
GATGATGATATTCGCCACCAAATGGCGTTGGACTGGGTGAGCCGGGAACAGAGTGTGCCA
GGAGCACTGTCTAGAGAGCTGGCTTCTACTGAGCGGGAACTGGATGAAGCCCGGCTGGCA
GGCAAGGAGCTGCGCTTCCACAAGGAGAAGAAAGATATTCTCATGCTGGCTGCTGGGCAG
TTGGGCAATATGCATTCTTCCAACTGCTAAGCATCCACCTGCATATTCTCCATCTTCTCC
AAGCCCTTTTTTTAATACATCCTTTCTAAGACTTAGTGTGATTTCTGTATATACTTTCTC
AATTTTATACTTAAAAAATATATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGATGAAACAGTCCCGTGGGGCTGACTTGAAGAATGGGGCTCTAGTGGTTTATGAGATG
GTTCCCTCCAACAGTCCGCCCTATGTCTGCTATGTCACCTTGCCTGGGGGAAGTTGCTTT
GGGAGTTTCCAGTTTTGCCCCACAAAAGCCGAAGCCCGGAGGAGTGCTGCAAAGATTGCT
TTAATGAACTCTGTGTTTAATGAACATCCTTCCCGAAGAATCACCGATGAGTTCATTGAG
AAGAGTGTCTCTGAGGCCCTGGCATCTTTCAATGGCAACAGGGAGGAAGCTGACAATCCA
AATACAGGGATTGGCGCCTTCCGATTCATGTTGGAATCCAACAAGGGCAAGTCAATGTTG
GAGTTCCAGGAGCTAATGACAGTTTTTCAACTGCTGCACTGGAATGGCAGCCTTAAGGCC
ATGAGGGAAAGGCAGTGCTCTCGGCAGGAAGTGTTGGCTCATTATTCACACCGAGCCCTA
GATGATGATATTCGCCACCAAATGGCGTTGGACTGGGTGAGCCGGGAACAGAGTGTGCCA
GGAGCACTGTCTAGAGAGCTGGCTTCTACTGAGCGGGAACTGGATGAAGCCCGGCTGGCA
GGCAAGGAGCTGCGCTTCCACAAGGAGAAGAAAGATATTCTCATGCTGGCTGCTGGGCAG
TTGGGCAATATGCATTCTTCCAACTGCTAAGCATCCACCTGCATATTCTCCATCTTCTCC
AAGCCCTTTTTTTAATACATCCTTTCTAAGACTTAGTGTGATTTCTGTATATACTTTCTC
AATTTTATACTTAAAAAATATATA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|55592519|ref|XP_514420.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|55592519|ref|XP_514420.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               524-722, + strand, RNAz p=0.931758

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               524-722, + strand, RNAz p=0.931758

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               3' of NM_153713, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_153713, +

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               131-274, gnl|bosTau2|chr3 (15413224-15413367)
               

               
               131-274, gnl|Hg17|chr1 (142981277-142981420)
               

               
               131-274, gnl|Mm7|chr3 (96492549-96492692)
               


               
               445-802, gnl|bosTau2|chr3 (15421907-15422261)
               

               
               445-802, gnl|Hg17|chr1 (142987577-142987929)
               

               
               445-802, gnl|Mm7|chr3 (96497611-96497971)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               131-274, gnl|bosTau2|chr3 (15413224-15413367)
               

               
               131-274, gnl|Hg17|chr1 (142981277-142981420)
               

               
               131-274, gnl|Mm7|chr3 (96492549-96492692)
               


               
               445-802, gnl|bosTau2|chr3 (15421907-15422261)
               

               
               445-802, gnl|Hg17|chr1 (142987577-142987929)
               

               
               445-802, gnl|Mm7|chr3 (96497611-96497971)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               nco (0.161734)
               

               
               pgl (0.118483)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)
               

               
               pgl (0.118483)

	131-274, gnl\|bosTau2\|chr3 (15413224-15413367)
	131-274, gnl\|Hg17\|chr1 (142981277-142981420)
	131-274, gnl\|Mm7\|chr3 (96492549-96492692)

	445-802, gnl\|bosTau2\|chr3 (15421907-15422261)
	445-802, gnl\|Hg17\|chr1 (142987577-142987929)
	445-802, gnl\|Mm7\|chr3 (96497611-96497971)