Non-Coding RNA Search

Ss1.1-Pig4-TMW8054N19.3

Sequence:


               
               GGGGAGACTCCACGAGCAGACCCAGAAAACTCCAACTTGCTTTTCCTGCTTGAAGAAAAG
GTGAAGGTTCCTAGGATTCCAACACCACATATTTGGGGCGGGTAGTGAGTAGGAGCTTCC
ACCCCCGCTGGGAAAGGCGTCTTGGCCATCCATCTCCTGGTTCCTAAGCGTCTGACCTGG
GCCTTGCGCTCGGGGCCCAGCCATTGGCTGCCTTCCTTGTTCTAGAAACGATCCTCCAGG
CTGAAGTGTCAGGGCCCGCCCAACCCCCTGGGGTCAAGATCCAAGGTGCATCGCCTTGCC
ATTCCTGGGGCCAGGCTTGGGCTTCATTTCACATTTGGTCCCTGGGGTACAAAGGGCTCT
ATTTCCTCCAGGGCTGGGCTTTTCCAGTGATTGGCACAAGAAGTTTGCAGGGATCTCTTT
CTGGAACTCTTTGCAGCAGAACCGGTCCCCCTGTCCCCACCCCACACACTGTCAGGCCTC
TGCTACCCCCAGGGAGTACCCAAAACCATGACTGGTGGGAACTGCCCAGGCCTCCTATTG
GTTGGCTGAAATCTCTTTCCAAAAAAATAAGAACATATAGAAAGAAGGAAAGAAAGAAAG
AAGGAAAGCAAGCAAGCAAGCGAATGCTGTTTGCTACTTTCCCTAGCTACCTGTTGTCCA
AGGTCATTTGAATTTTTCTCCAAAGCAGTCAGTCAGAGCTAGTGCCTCCTTCCTCATCCC
CAGCCCCTCCTTCATGAGGCTGCCTTGTGTTTCCTGGGGCAAAAAACCTATCTGTGAAAA
AAAGAATTCCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGAGACTCCACGAGCAGACCCAGAAAACTCCAACTTGCTTTTCCTGCTTGAAGAAAAG
GTGAAGGTTCCTAGGATTCCAACACCACATATTTGGGGCGGGTAGTGAGTAGGAGCTTCC
ACCCCCGCTGGGAAAGGCGTCTTGGCCATCCATCTCCTGGTTCCTAAGCGTCTGACCTGG
GCCTTGCGCTCGGGGCCCAGCCATTGGCTGCCTTCCTTGTTCTAGAAACGATCCTCCAGG
CTGAAGTGTCAGGGCCCGCCCAACCCCCTGGGGTCAAGATCCAAGGTGCATCGCCTTGCC
ATTCCTGGGGCCAGGCTTGGGCTTCATTTCACATTTGGTCCCTGGGGTACAAAGGGCTCT
ATTTCCTCCAGGGCTGGGCTTTTCCAGTGATTGGCACAAGAAGTTTGCAGGGATCTCTTT
CTGGAACTCTTTGCAGCAGAACCGGTCCCCCTGTCCCCACCCCACACACTGTCAGGCCTC
TGCTACCCCCAGGGAGTACCCAAAACCATGACTGGTGGGAACTGCCCAGGCCTCCTATTG
GTTGGCTGAAATCTCTTTCCAAAAAAATAAGAACATATAGAAAGAAGGAAAGAAAGAAAG
AAGGAAAGCAAGCAAGCAAGCGAATGCTGTTTGCTACTTTCCCTAGCTACCTGTTGTCCA
AGGTCATTTGAATTTTTCTCCAAAGCAGTCAGTCAGAGCTAGTGCCTCCTTCCTCATCCC
CAGCCCCTCCTTCATGAGGCTGCCTTGTGTTTCCTGGGGCAAAAAACCTATCTGTGAAAA
AAAGAATTCCAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               247-445, + strand, RNAz p=0.853563

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               247-445, + strand, RNAz p=0.853563

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               128-578, gnl|bosTau2|chr3 (72304303-72303858)
               

               
               128-578, gnl|Hg17|chr1 (41644375-41643986)
               


               
               615-787, gnl|bosTau2|chr3 (72303781-72303611)
               

               
               615-787, gnl|Hg17|chr1 (41643985-41643794)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               128-578, gnl|bosTau2|chr3 (72304303-72303858)
               

               
               128-578, gnl|Hg17|chr1 (41644375-41643986)
               


               
               615-787, gnl|bosTau2|chr3 (72303781-72303611)
               

               
               615-787, gnl|Hg17|chr1 (41643985-41643794)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cbr (0.127975)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbr (0.127975)

	128-578, gnl\|bosTau2\|chr3 (72304303-72303858)
	128-578, gnl\|Hg17\|chr1 (41644375-41643986)

	615-787, gnl\|bosTau2\|chr3 (72303781-72303611)
	615-787, gnl\|Hg17\|chr1 (41643985-41643794)