Ss1.1-Pig4-TMW8054N21.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATGTCCACGTCATCGACTTCCACAACCCTGCGGATCCCGTGGAAATCAAGACACTGTTCC GGCCCCCCGAGCCCTGCAACGAGACGGCCAAGCTCGGGGACTTTGTTCGCTACCACTACA ACTGCTCTCTGCTGGATGGCACCAGGCTCTTCTCCTCCCATGACTACGGGGCCCCTCAGG AGGCAACTCTGGGGGCTCACAAGGTGATCGAAGGCCTGGACACGGGCCTGCAGGGCATGT GTGTGGGAGAGAGGCGGCAGGTTGTGGTCCCCCCACACCTGGCCCACGGAGAGAGCGGAG CCCGAGGGGTCCCTGGCAGTGCGGTGCTGCTGTTTGAGGTGGAGCTGGTGTCCCGGGAGG ATGGGCTGCCCACGGGCTACCTGTTTGTGTGGCACGAGGACCCTCCTGCCAACCTGTTTG AAGACCTGGACCTCAACAAGGATGGCGAGGTGTCCCCGGAGGAGTTCTCCACCTTCATCA AGGCCCAAGTCAGTGAGGGCAAAGGACGCCTCTTGCCGGGCCAGGATCCAGAGAAAACCA TAGGAGACATGTTCCAGAATCAGGATCGCAACCAGGATGGCAAGATCACGGTCGAGGAGC TCAAGCTGAAGTCCGATGAAGACCAGGAGCGGGTCCATGAGGAGCTGTGAAGGGCAGAGG CCGGGCCCGAATGCAAAGGCCCACGTCCTAGGGGCACAGTTGGGCAGTGGGGCTGACTTT CCAACAGTCACCCTCCCCTCTGCTGGGATGAGGTCTGGAAGCATCTAAAAAGTGGCCAGA GGGGGCAGCTCTGGTCTTCCCACTGCCCCAGAGGAACATCCACGGCACAGGCCTCTGTTC GGTTTTTCTCTTCCAACCCCAAACCCCTTCCTTAAAAGTTTCCGAGTTACAAAGCCACTG TGGGCACGGGCAGGATCTGGAGATTGGCCGAGACCACTGCTGGGCCTGGCCCAGGTCTCC CCTCTATCACCAGCCGCTGAACAAGGCCAAGCTCACCGTGTCTTCATCTCCCCCGACTTC CCCTTTGCCTCTACTGTTTCTCACCATCCTCGAACCCCCGCCTGTAGCCCCCTTCCTCCG TCCTGGCAACTCCCCAGGCCATGGGCCTCCAGCTTCCCTCTCTGCTCTGGCTGGTTCCTA GGGAAGGGGTGGTTCCAGGAGGGCAGCCCTACCTCACCTGTCCTGTTCCCCCCTCGCTGT GTCCAGTGGTAGCTTAGGTGCCATCAGGATGCTGCAGGTCAAGGCTGGGTTTTATGTCCA CTTTCCTCCCTAAAGAAGGCTGCCTTCTCTAAGAGCCAAGGAACAGGAAAAAAATCGAAG GTGGGTCATGAAGAAACCTACTTGCCTGGGCCCGAGGGCTATGAAAGCCTTGGTTCAGGG CTCAGATAAACGTGGACGAGGGGAATCACTGCGGGCTGAGGGGTGAAAGGGAGGTGGGCG GAGCTCTGCACACTCAAAAGACAAAACTGGTGTCAGATCCCTTTCTCCTTTGTGCCAAAT AAAAGACTAAACCAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATGTCCACGTCATCGACTTCCACAACCCTGCGGATCCCGTGGAAATCAAGACACTGTTCC GGCCCCCCGAGCCCTGCAACGAGACGGCCAAGCTCGGGGACTTTGTTCGCTACCACTACA ACTGCTCTCTGCTGGATGGCACCAGGCTCTTCTCCTCCCATGACTACGGGGCCCCTCAGG AGGCAACTCTGGGGGCTCACAAGGTGATCGAAGGCCTGGACACGGGCCTGCAGGGCATGT GTGTGGGAGAGAGGCGGCAGGTTGTGGTCCCCCCACACCTGGCCCACGGAGAGAGCGGAG CCCGAGGGGTCCCTGGCAGTGCGGTGCTGCTGTTTGAGGTGGAGCTGGTGTCCCGGGAGG ATGGGCTGCCCACGGGCTACCTGTTTGTGTGGCACGAGGACCCTCCTGCCAACCTGTTTG AAGACCTGGACCTCAACAAGGATGGCGAGGTGTCCCCGGAGGAGTTCTCCACCTTCATCA AGGCCCAAGTCAGTGAGGGCAAAGGACGCCTCTTGCCGGGCCAGGATCCAGAGAAAACCA TAGGAGACATGTTCCAGAATCAGGATCGCAACCAGGATGGCAAGATCACGGTCGAGGAGC TCAAGCTGAAGTCCGATGAAGACCAGGAGCGGGTCCATGAGGAGCTGTGAAGGGCAGAGG CCGGGCCCGAATGCAAAGGCCCACGTCCTAGGGGCACAGTTGGGCAGTGGGGCTGACTTT CCAACAGTCACCCTCCCCTCTGCTGGGATGAGGTCTGGAAGCATCTAAAAAGTGGCCAGA GGGGGCAGCTCTGGTCTTCCCACTGCCCCAGAGGAACATCCACGGCACAGGCCTCTGTTC GGTTTTTCTCTTCCAACCCCAAACCCCTTCCTTAAAAGTTTCCGAGTTACAAAGCCACTG TGGGCACGGGCAGGATCTGGAGATTGGCCGAGACCACTGCTGGGCCTGGCCCAGGTCTCC CCTCTATCACCAGCCGCTGAACAAGGCCAAGCTCACCGTGTCTTCATCTCCCCCGACTTC CCCTTTGCCTCTACTGTTTCTCACCATCCTCGAACCCCCGCCTGTAGCCCCCTTCCTCCG TCCTGGCAACTCCCCAGGCCATGGGCCTCCAGCTTCCCTCTCTGCTCTGGCTGGTTCCTA GGGAAGGGGTGGTTCCAGGAGGGCAGCCCTACCTCACCTGTCCTGTTCCCCCCTCGCTGT GTCCAGTGGTAGCTTAGGTGCCATCAGGATGCTGCAGGTCAAGGCTGGGTTTTATGTCCA CTTTCCTCCCTAAAGAAGGCTGCCTTCTCTAAGAGCCAAGGAACAGGAAAAAAATCGAAG GTGGGTCATGAAGAAACCTACTTGCCTGGGCCCGAGGGCTATGAAAGCCTTGGTTCAGGG CTCAGATAAACGTGGACGAGGGGAATCACTGCGGGCTGAGGGGTGAAAGGGAGGTGGGCG GAGCTCTGCACACTCAAAAGACAAAACTGGTGTCAGATCCCTTTCTCCTTTGTGCCAAAT AAAAGACTAAACCAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 695-808, - strand, RNAz p=0.937114 | |
| 1387-1504, - strand, RNAz p=0.941515 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 695-808, - strand, RNAz p=0.937114 | |
| 1387-1504, - strand, RNAz p=0.941515 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 3-157, gnl|bosTau2|chr23 (145602-145448) | |
| 3-157, gnl|canFam2|chr9 (24323276-24323063) | |
| 3-157, gnl|danRer3|chr12 (16399954-16399756) | |
| 3-157, gnl|dasNov1|scaffold_59572 (9332-9120) | |
| 3-157, gnl|echTel1|scaffold_112095 (45-238) | |
| 3-157, gnl|fr1|chrUn (96651723-96651935) | |
| 3-157, gnl|galGal2|chr27_random (483488-483276) | |
| 3-157, gnl|hg17|chr17 (37230031-37230247) | |
| 3-157, gnl|Hg17|chr17 (37230085-37230239) | |
| 3-157, gnl|loxAfr1|scaffold_43844 (16149-15933) | |
| 3-157, gnl|mm7|chr11 (100531653-100531866) | |
| 3-157, gnl|Mm7|chr11 (100531703-100531857) | |
| 3-157, gnl|monDom2|scaffold_18 (52091409-52091626) | |
| 3-157, gnl|oryCun1|scaffold_204030 (33936-33717) | |
| 3-157, gnl|panTro1|chr19 (40430184-40430400) | |
| 3-157, gnl|rheMac2|chr16 (51915471-51915687) | |
| 3-157, gnl|rn3|chr10 (89378592-89378805) | |
| 3-157, gnl|tetNig1|chr2_random (14948-15149) | |
| 3-157, gnl|xenTro1|scaffold_394 (745379-745591) | |
| 158-311, gnl|bosTau2|chr23 (145105-144953) | |
| 158-311, gnl|Hg17|chr17 (37230725-37230877) | |
| 158-311, gnl|Mm7|chr11 (100532124-100532276) | |
| 463-1514, gnl|bosTau2|chr23 (144234-143212) | |
| 463-1514, gnl|Hg17|chr17 (37231999-37232990) | |
| 463-1514, gnl|Mm7|chr11 (100532925-100533861) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-157, gnl|bosTau2|chr23 (145602-145448) | |
| 3-157, gnl|canFam2|chr9 (24323276-24323063) | |
| 3-157, gnl|danRer3|chr12 (16399954-16399756) | |
| 3-157, gnl|dasNov1|scaffold_59572 (9332-9120) | |
| 3-157, gnl|echTel1|scaffold_112095 (45-238) | |
| 3-157, gnl|fr1|chrUn (96651723-96651935) | |
| 3-157, gnl|galGal2|chr27_random (483488-483276) | |
| 3-157, gnl|hg17|chr17 (37230031-37230247) | |
| 3-157, gnl|Hg17|chr17 (37230085-37230239) | |
| 3-157, gnl|loxAfr1|scaffold_43844 (16149-15933) | |
| 3-157, gnl|mm7|chr11 (100531653-100531866) | |
| 3-157, gnl|Mm7|chr11 (100531703-100531857) | |
| 3-157, gnl|monDom2|scaffold_18 (52091409-52091626) | |
| 3-157, gnl|oryCun1|scaffold_204030 (33936-33717) | |
| 3-157, gnl|panTro1|chr19 (40430184-40430400) | |
| 3-157, gnl|rheMac2|chr16 (51915471-51915687) | |
| 3-157, gnl|rn3|chr10 (89378592-89378805) | |
| 3-157, gnl|tetNig1|chr2_random (14948-15149) | |
| 3-157, gnl|xenTro1|scaffold_394 (745379-745591) | |
| 158-311, gnl|bosTau2|chr23 (145105-144953) | |
| 158-311, gnl|Hg17|chr17 (37230725-37230877) | |
| 158-311, gnl|Mm7|chr11 (100532124-100532276) | |
| 463-1514, gnl|bosTau2|chr23 (144234-143212) | |
| 463-1514, gnl|Hg17|chr17 (37231999-37232990) | |
| 463-1514, gnl|Mm7|chr11 (100532925-100533861) |
| Expressed library(ies): 12 entry(ies) | More info |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
| amn (0.417711) | |
| nca (0.273748) | |
| ese (0.253004) | |
| cly (0.241284) | |
| eru (0.240096) | |
| jca (0.22792) | |
| nlu (0.191681) | |
| fty (0.17584) | |
| nmm (0.132802) | |
| med (0.116252) | |
| cty (0.10408) | |
| eje (0.0988338) |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (0.417711) | |
| nca (0.273748) | |
| ese (0.253004) | |
| cly (0.241284) | |
| eru (0.240096) | |
| jca (0.22792) | |
| nlu (0.191681) | |
| fty (0.17584) | |
| nmm (0.132802) | |
| med (0.116252) | |
| cty (0.10408) | |
| eje (0.0988338) |