Ss1.1-Pig4-TMW8054O01.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CACCGCTGCAGCAGGGCACCGCCGCCTGAGTGCCCGCTCAGCGCCCCCGAGGACAGCTAC GGCGAGCCCCCGAAGCCCGCACGATGCAGGCCACTGCCGATTCCACCAAGATGGACTGTG TGTGGAGCAACTGGAAAAGTCAGGCTATTGACCTGCTGTACTGGAGGGACATCAAGCAGA CAGGGATAGTGTTTGGGAGCTTCTTGCTGCTGCTCTTCTCCCTGACCCAGTTCAGCGTTG TGAGCGTCGTGGCCTACCTGGCCCTTGCTGCGCTCTCGGCCACCATCAGTTTCCGCATCT ACAAGTCTGTTTTACAAGCTGTGCAGAAAACCGACGAGGGCCACCCTTTCAAGGCCTACT TGGAGCTGGAGATCACCCTGTCTCAGGAGCAGATTCAGAAGTACACAGACTGCCTGCAAT TCTATGTGAACAGCACGCTTAAAGAACTGAGGAGGCTCTTCCTCGTCCAGGACCTGGTGG ATTCCCTAAAATTTGCAGTCCTGATGTGGCTCCTAACCTATGTTGGCGCTCTCTTCAATG GCCTGACCCTGCTGCTCATGGCTGTAGTTTCAATGTTTACTCTACCTGTAGTGTATGTTA AGCACCAGGCACAGATTGACCAATATCTGGGACTGGTGAGGACTCACATAAATGCTGTCG TGGCAAAGATTCAGGCTAAAATCCCAGGCGCTAAAAGGCACGCTGAGTAAATCGATATCC CACCGGGGACTGGACATCAAGAGGAATGTCTGAAGTGGTAACAGCTCTGTCTTACATGTT ACTGCAAATTGATTGTTTCTCCCCCCAGTACCATAATCTTAGAGACAAACTTTAAAACAG CTATTTTTAGGCTGTTCCTGTACTCTTAGGATATTTGAGTCACTTGTGTCAAGCACTAAA GTATAGAGAAAAGTGTATTAGATGTGGTTTTTAATTTTGTGTTGCTGAAAAAAAAAGTGC ATGATGGCGAGAACCCAAGTTATCTTTCTTTTGTCGGTGTTCTTCTCCTCTCTGCAATGC TTCTGTAGCTTCTCATGTTTCCTGTGGCTAGGCTTTTCTTGCCCAGTGCACTGATGCAGT AGTGGAAATCGCTTATCTGTCTTGGGTTGCTGGTTGGATTAATCTTTAATAACAATATAT AGACTTGTAGACTAATGTTTAAGTTTTTCCAACACACACAACATGAAAATAAAAACAAGT CGACCGTACTTAGGATAATCAGTTTTGTATAACTTAAAATAATTAAATAAATGAATAAAT CCAAAACAAACATGCAGTACTTTTGTTGTGTGAGACGGATGGACTGATTTACATGTATGG TAACTAAAAAGTACCAGCATGTTAACTTTATTACAATTTGTATTACTTTCTCTGTAGTTC CTAATGGACTTAATTATGGACTCTGGATATTTGCACTTATGTACTTGATACTGAATGCAT AAATAAATGTTACTAAATGTAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CACCGCTGCAGCAGGGCACCGCCGCCTGAGTGCCCGCTCAGCGCCCCCGAGGACAGCTAC GGCGAGCCCCCGAAGCCCGCACGATGCAGGCCACTGCCGATTCCACCAAGATGGACTGTG TGTGGAGCAACTGGAAAAGTCAGGCTATTGACCTGCTGTACTGGAGGGACATCAAGCAGA CAGGGATAGTGTTTGGGAGCTTCTTGCTGCTGCTCTTCTCCCTGACCCAGTTCAGCGTTG TGAGCGTCGTGGCCTACCTGGCCCTTGCTGCGCTCTCGGCCACCATCAGTTTCCGCATCT ACAAGTCTGTTTTACAAGCTGTGCAGAAAACCGACGAGGGCCACCCTTTCAAGGCCTACT TGGAGCTGGAGATCACCCTGTCTCAGGAGCAGATTCAGAAGTACACAGACTGCCTGCAAT TCTATGTGAACAGCACGCTTAAAGAACTGAGGAGGCTCTTCCTCGTCCAGGACCTGGTGG ATTCCCTAAAATTTGCAGTCCTGATGTGGCTCCTAACCTATGTTGGCGCTCTCTTCAATG GCCTGACCCTGCTGCTCATGGCTGTAGTTTCAATGTTTACTCTACCTGTAGTGTATGTTA AGCACCAGGCACAGATTGACCAATATCTGGGACTGGTGAGGACTCACATAAATGCTGTCG TGGCAAAGATTCAGGCTAAAATCCCAGGCGCTAAAAGGCACGCTGAGTAAATCGATATCC CACCGGGGACTGGACATCAAGAGGAATGTCTGAAGTGGTAACAGCTCTGTCTTACATGTT ACTGCAAATTGATTGTTTCTCCCCCCAGTACCATAATCTTAGAGACAAACTTTAAAACAG CTATTTTTAGGCTGTTCCTGTACTCTTAGGATATTTGAGTCACTTGTGTCAAGCACTAAA GTATAGAGAAAAGTGTATTAGATGTGGTTTTTAATTTTGTGTTGCTGAAAAAAAAAGTGC ATGATGGCGAGAACCCAAGTTATCTTTCTTTTGTCGGTGTTCTTCTCCTCTCTGCAATGC TTCTGTAGCTTCTCATGTTTCCTGTGGCTAGGCTTTTCTTGCCCAGTGCACTGATGCAGT AGTGGAAATCGCTTATCTGTCTTGGGTTGCTGGTTGGATTAATCTTTAATAACAATATAT AGACTTGTAGACTAATGTTTAAGTTTTTCCAACACACACAACATGAAAATAAAAACAAGT CGACCGTACTTAGGATAATCAGTTTTGTATAACTTAAAATAATTAAATAAATGAATAAAT CCAAAACAAACATGCAGTACTTTTGTTGTGTGAGACGGATGGACTGATTTACATGTATGG TAACTAAAAAGTACCAGCATGTTAACTTTATTACAATTTGTATTACTTTCTCTGTAGTTC CTAATGGACTTAATTATGGACTCTGGATATTTGCACTTATGTACTTGATACTGAATGCAT AAATAAATGTTACTAAATGTAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 236-353, - strand, RNAz p=0.751506 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 236-353, - strand, RNAz p=0.751506 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 144-353, gnl|bosTau2|chr10 (48853163-48852954) | |
| 144-353, gnl|canFam2|chr8 (37849255-37849505) | |
| 144-353, gnl|danRer3|chr20 (23131430-23131659) | |
| 144-353, gnl|dasNov1|scaffold_5037 (50874-50628) | |
| 144-353, gnl|echTel1|scaffold_316658 (47012-46774) | |
| 144-353, gnl|fr1|chrUn (69783576-69783347) | |
| 144-353, gnl|galGal2|chr5 (51511796-51511574) | |
| 144-353, gnl|hg17|chr14 (59143751-59143992) | |
| 144-353, gnl|Hg17|chr14 (59143964-59143755) | |
| 144-353, gnl|loxAfr1|scaffold_5382 (79940-79696) | |
| 144-353, gnl|mm7|chr12 (70172948-70173188) | |
| 144-353, gnl|Mm7|chr12 (70173161-70172952) | |
| 144-353, gnl|monDom2|scaffold_8 (72055913-72056147) | |
| 144-353, gnl|oryCun1|scaffold_139330 (8596-8388) | |
| 144-353, gnl|panTro1|chr15 (58713297-58713538) | |
| 144-353, gnl|rheMac2|chr7 (122620037-122620281) | |
| 144-353, gnl|rn3|chr6 (94415537-94415783) | |
| 144-353, gnl|tetNig1|chr10 (5521058-5521281) | |
| 144-353, gnl|xenTro1|scaffold_33 (657777-657544) | |
| 668-1465, gnl|bosTau2|chr10 (48839458-48838661) | |
| 668-1465, gnl|Hg17|chr14 (59133258-59132450) | |
| 668-1465, gnl|Mm7|chr12 (70162123-70161294) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 144-353, gnl|bosTau2|chr10 (48853163-48852954) | |
| 144-353, gnl|canFam2|chr8 (37849255-37849505) | |
| 144-353, gnl|danRer3|chr20 (23131430-23131659) | |
| 144-353, gnl|dasNov1|scaffold_5037 (50874-50628) | |
| 144-353, gnl|echTel1|scaffold_316658 (47012-46774) | |
| 144-353, gnl|fr1|chrUn (69783576-69783347) | |
| 144-353, gnl|galGal2|chr5 (51511796-51511574) | |
| 144-353, gnl|hg17|chr14 (59143751-59143992) | |
| 144-353, gnl|Hg17|chr14 (59143964-59143755) | |
| 144-353, gnl|loxAfr1|scaffold_5382 (79940-79696) | |
| 144-353, gnl|mm7|chr12 (70172948-70173188) | |
| 144-353, gnl|Mm7|chr12 (70173161-70172952) | |
| 144-353, gnl|monDom2|scaffold_8 (72055913-72056147) | |
| 144-353, gnl|oryCun1|scaffold_139330 (8596-8388) | |
| 144-353, gnl|panTro1|chr15 (58713297-58713538) | |
| 144-353, gnl|rheMac2|chr7 (122620037-122620281) | |
| 144-353, gnl|rn3|chr6 (94415537-94415783) | |
| 144-353, gnl|tetNig1|chr10 (5521058-5521281) | |
| 144-353, gnl|xenTro1|scaffold_33 (657777-657544) | |
| 668-1465, gnl|bosTau2|chr10 (48839458-48838661) | |
| 668-1465, gnl|Hg17|chr14 (59133258-59132450) | |
| 668-1465, gnl|Mm7|chr12 (70162123-70161294) |
| Expressed library(ies): 17 entry(ies) | More info |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
| cbe (3.82775) | |
| fcc (2.17563) | |
| fco (1.8865) | |
| ece (1.83444) | |
| spc (1.81385) | |
| ebs (1.77452) | |
| ecc (0.575175) | |
| fce (0.271592) | |
| sug (0.254582) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| lyg (0.133103) | |
| nmm (0.132802) | |
| ret (0.128733) | |
| pgl (0.118483) |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbe (3.82775) | |
| fcc (2.17563) | |
| fco (1.8865) | |
| ece (1.83444) | |
| spc (1.81385) | |
| ebs (1.77452) | |
| ecc (0.575175) | |
| fce (0.271592) | |
| sug (0.254582) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| lyg (0.133103) | |
| nmm (0.132802) | |
| ret (0.128733) | |
| pgl (0.118483) |