Ss1.1-Pig4-TMW8054O14.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGCAGCAGAGAGCAGCGCCGAAAAATGGCTGAAGCGGGCACGGGCTTTGCTGTGTAGCA GCTCATCTCTCCATTCTTACACGTACACTCTCCTCGATTTTTCTTTCCTTCCTTTCTTTT TTCTAATTTTTAAAAGCAGCCTCTGGAGCCAGCCATGTTTGGCACTGAATCTTCATTAAG CATGTTTTTGAACACACTGACACCGAAGTTCTACGTGGCCCTGACAGGCACTTCCTCACT AATATCAGGGCTTATTTTGATATTTGAATGGTGGTATTTTCGCAAGTATGGGACATCATT CATTGAACAAGTCTCAGTGAGCCACTTGCGCCCCCTTCTGGGAGGGGTTGACAACAACTC CTCCAACAATTCTAACTCCAGTAATGGGGACTCAGATTCCAACAGGCAAAGTGTCTCAGA ATGTAAAGTGTGGCGAAATCCACTAAATTTATTTAGGGGCGCTGAATATAATCGGTATAC ATGGGTGACAGGACGGGAGCCTCTGACTTACTATGACATGAATCTCTCTGCCCAGGACCA CCAGACATTCTTCACTTGTGACTCAGACCATCTGCGTCCCGCAGATGCAATAATGCAGAA AGCCTGGAGAGAGAGAAACCCCCAAGCTAGGATTTCTGCAGCTCATGAAGCCTTAGAGAT AAATGAGTGTGCAACTGCTTATATTCTCTTGGCGGAAGAGGAAGCAACAACAATTGCTGA AGCAGAAAAGCTGTTTAAGCAGGCTCTGAAAGCTGGAGATGGCTGTTACCGGCGTTCTCA GCAGCTACAGCATCATGGATCCCAGTATGAAGCCCAACATAGACGAGACACCAACGTCTT GGTCTACATCAAAAGAAGGCTAGCAATGTGTGCCAGAAGACTTGGGAGGACCAGGGAAGC AGTGAAAATGATGAGAGATTTAATGAAGGAGTTCCCCCTCCTGAGCATGTTCAACATCCA TGAAAACCTTTTAGAAGCCCTCCTGGAACTACAAGCATATGCTGATGTTCAGGCAGTCTT AGCAAAGTATGATGATATAAGCTTACCAAAGTCAGCAACAATATGCTACACAGCTGCCTT GCTCAAAGCAAGAGCTGTCTCTGACAAATTCTCTCCTGAGGCTGCATCTCGGCGGGGGCT GAGCACAGCAGAGATGAATGCAGTAGAGGCCATTCATAGAGCTGTGGAATTCAATCCGCA TGTGCCAAAATATTTACTAGAAATGAAAAGCTTGATCCTGCCCCCAGAACACATCCTGAA GAGAGGGGACAGTGAAGCAATCGCATATGCGTTCTTTCATCTGGCACACTGGAAGAGGGT AGAAGGGGCTTTGAATCTTCTGCACTGTACATGGGAAGGCACTTTTCGGATGATCCCATA TCCCTTGGAAAAGGGGCATCTGTTTTATCCTTACCCCATCTGTACAGAGACGGCAGACCG TGAGCTGCTCCCGTCTTTCCATGAAGTCTCAGTTTACCCAAAAAAGGAGCTTCCCTTCTT TATTCTCTTTAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGCAGCAGAGAGCAGCGCCGAAAAATGGCTGAAGCGGGCACGGGCTTTGCTGTGTAGCA GCTCATCTCTCCATTCTTACACGTACACTCTCCTCGATTTTTCTTTCCTTCCTTTCTTTT TTCTAATTTTTAAAAGCAGCCTCTGGAGCCAGCCATGTTTGGCACTGAATCTTCATTAAG CATGTTTTTGAACACACTGACACCGAAGTTCTACGTGGCCCTGACAGGCACTTCCTCACT AATATCAGGGCTTATTTTGATATTTGAATGGTGGTATTTTCGCAAGTATGGGACATCATT CATTGAACAAGTCTCAGTGAGCCACTTGCGCCCCCTTCTGGGAGGGGTTGACAACAACTC CTCCAACAATTCTAACTCCAGTAATGGGGACTCAGATTCCAACAGGCAAAGTGTCTCAGA ATGTAAAGTGTGGCGAAATCCACTAAATTTATTTAGGGGCGCTGAATATAATCGGTATAC ATGGGTGACAGGACGGGAGCCTCTGACTTACTATGACATGAATCTCTCTGCCCAGGACCA CCAGACATTCTTCACTTGTGACTCAGACCATCTGCGTCCCGCAGATGCAATAATGCAGAA AGCCTGGAGAGAGAGAAACCCCCAAGCTAGGATTTCTGCAGCTCATGAAGCCTTAGAGAT AAATGAGTGTGCAACTGCTTATATTCTCTTGGCGGAAGAGGAAGCAACAACAATTGCTGA AGCAGAAAAGCTGTTTAAGCAGGCTCTGAAAGCTGGAGATGGCTGTTACCGGCGTTCTCA GCAGCTACAGCATCATGGATCCCAGTATGAAGCCCAACATAGACGAGACACCAACGTCTT GGTCTACATCAAAAGAAGGCTAGCAATGTGTGCCAGAAGACTTGGGAGGACCAGGGAAGC AGTGAAAATGATGAGAGATTTAATGAAGGAGTTCCCCCTCCTGAGCATGTTCAACATCCA TGAAAACCTTTTAGAAGCCCTCCTGGAACTACAAGCATATGCTGATGTTCAGGCAGTCTT AGCAAAGTATGATGATATAAGCTTACCAAAGTCAGCAACAATATGCTACACAGCTGCCTT GCTCAAAGCAAGAGCTGTCTCTGACAAATTCTCTCCTGAGGCTGCATCTCGGCGGGGGCT GAGCACAGCAGAGATGAATGCAGTAGAGGCCATTCATAGAGCTGTGGAATTCAATCCGCA TGTGCCAAAATATTTACTAGAAATGAAAAGCTTGATCCTGCCCCCAGAACACATCCTGAA GAGAGGGGACAGTGAAGCAATCGCATATGCGTTCTTTCATCTGGCACACTGGAAGAGGGT AGAAGGGGCTTTGAATCTTCTGCACTGTACATGGGAAGGCACTTTTCGGATGATCCCATA TCCCTTGGAAAAGGGGCATCTGTTTTATCCTTACCCCATCTGTACAGAGACGGCAGACCG TGAGCTGCTCCCGTCTTTCCATGAAGTCTCAGTTTACCCAAAAAAGGAGCTTCCCTTCTT TATTCTCTTTAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 259-429, + strand, RNAz p=0.950392 | |
| 303-429, - strand, RNAz p=0.954727 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 259-429, + strand, RNAz p=0.950392 | |
| 303-429, - strand, RNAz p=0.954727 |
| Aligned organism(s): 100 entry(ies) | More info |
| Aligned organism(s): 100 entry(ies) | Help | Less info |
| 46-180, gnl|bosTau2|chr4 (25859947-25859803) | |
| 46-180, gnl|Hg17|chr7 (116254494-116254639) | |
| 46-180, gnl|Mm7|chr6 (17689922-17690075) | |
| 259-429, gnl|bosTau2|chr4 (26507412-26507241) | |
| 259-429, gnl|canFam2|chr14 (58951759-58951904) | |
| 259-429, gnl|danRer3|chrNA (127665466-127665330) | |
| 259-429, gnl|dasNov1|scaffold_44187 (6210-6066) | |
| 259-429, gnl|echTel1|scaffold_278457 (3383-3525) | |
| 259-429, gnl|fr1|chrUn (231857006-231856868) | |
| 259-429, gnl|galGal2|chr1 (21738761-21738619) | |
| 259-429, gnl|hg17|chr7 (116353550-116353692) | |
| 259-429, gnl|Hg17|chr7 (116353565-116353736) | |
| 259-429, gnl|loxAfr1|scaffold_142049 (5367-5512) | |
| 259-429, gnl|mm7|chr6 (17775058-17775199) | |
| 259-429, gnl|Mm7|chr6 (17775072-17775243) | |
| 259-429, gnl|monDom2|scaffold_22 (31787941-31787786) | |
| 259-429, gnl|oryCun1|scaffold_213083 (107759-107904) | |
| 259-429, gnl|panTro1|chr6 (118641073-118641215) | |
| 259-429, gnl|rheMac2|chr3 (154445961-154446103) | |
| 259-429, gnl|rn3|chr4 (43655199-43655340) | |
| 259-429, gnl|tetNig1|chr13 (10707259-10707403) | |
| 259-429, gnl|xenTro1|scaffold_17 (2206462-2206609) | |
| 474-613, gnl|bosTau2|chr4 (26496400-26496262) | |
| 474-613, gnl|canFam2|chr14 (58962472-58962612) | |
| 474-613, gnl|danRer3|chrNA (127663274-127663155) | |
| 474-613, gnl|dasNov1|scaffold_9074 (55480-55341) | |
| 474-613, gnl|echTel1|scaffold_278457 (15943-16083) | |
| 474-613, gnl|fr1|chrUn (231856074-231855954) | |
| 474-613, gnl|galGal2|chr1 (21735152-21735027) | |
| 474-613, gnl|hg17|chr7 (116364495-116364634) | |
| 474-613, gnl|Hg17|chr7 (116364495-116364632) | |
| 474-613, gnl|loxAfr1|scaffold_18927 (43013-43125) | |
| 474-613, gnl|mm7|chr6 (17786654-17786794) | |
| 474-613, gnl|Mm7|chr6 (17786654-17786792) | |
| 474-613, gnl|monDom2|scaffold_22 (31767526-31767382) | |
| 474-613, gnl|oryCun1|scaffold_143769 (239-350) | |
| 474-613, gnl|panTro1|chr6 (118651927-118652066) | |
| 474-613, gnl|rheMac2|chr3 (154456833-154456972) | |
| 474-613, gnl|rn3|chr4 (43666620-43666760) | |
| 474-613, gnl|tetNig1|chr13 (10708254-10708374) | |
| 667-822, gnl|bosTau2|chr4 (26491500-26491345) | |
| 667-822, gnl|Hg17|chr7 (116370086-116370241) | |
| 667-822, gnl|Mm7|chr6 (17792714-17792869) | |
| 920-1037, gnl|bosTau2|chr4 (26462155-26462038) | |
| 920-1037, gnl|canFam2|chr14 (58999492-58999613) | |
| 920-1037, gnl|danRer3|chrNA (127656241-127656120) | |
| 920-1037, gnl|dasNov1|scaffold_37987 (8914-8793) | |
| 920-1037, gnl|echTel1|scaffold_301719 (2558-2679) | |
| 920-1037, gnl|fr1|chrUn (231855150-231855029) | |
| 920-1037, gnl|galGal2|chr1 (21717430-21717309) | |
| 920-1037, gnl|hg17|chr7 (116404866-116404987) | |
| 920-1037, gnl|Hg17|chr7 (116404867-116404984) | |
| 920-1037, gnl|loxAfr1|scaffold_71727 (8201-8080) | |
| 920-1037, gnl|mm7|chr6 (17826459-17826580) | |
| 920-1037, gnl|Mm7|chr6 (17826460-17826577) | |
| 920-1037, gnl|monDom2|scaffold_22 (31731297-31731176) | |
| 920-1037, gnl|oryCun1|scaffold_201308 (143511-143389) | |
| 920-1037, gnl|panTro1|chr6 (118692351-118692472) | |
| 920-1037, gnl|rheMac2|chr3 (154502110-154502231) | |
| 920-1037, gnl|rn3|chr4 (43704843-43704964) | |
| 920-1037, gnl|tetNig1|chr13 (10709137-10709258) | |
| 920-1037, gnl|xenTro1|scaffold_17 (2216953-2217074) | |
| 1105-1210, gnl|bosTau2|chr4 (26437717-26437612) | |
| 1105-1210, gnl|canFam2|chr14 (59020697-59020842) | |
| 1105-1210, gnl|danRer3|chrNA (127655856-127655712) | |
| 1105-1210, gnl|dasNov1|scaffold_10178 (6655-6800) | |
| 1105-1210, gnl|echTel1|scaffold_280323 (9065-8920) | |
| 1105-1210, gnl|fr1|chrUn (231854542-231854428) | |
| 1105-1210, gnl|galGal2|chr1 (21706391-21706246) | |
| 1105-1210, gnl|hg17|chr7 (116424811-116424956) | |
| 1105-1210, gnl|Hg17|chr7 (116424836-116424941) | |
| 1105-1210, gnl|loxAfr1|scaffold_999 (42495-42636) | |
| 1105-1210, gnl|mm7|chr6 (17846836-17846979) | |
| 1105-1210, gnl|Mm7|chr6 (17846861-17846966) | |
| 1105-1210, gnl|monDom2|scaffold_22 (31707662-31707513) | |
| 1105-1210, gnl|oryCun1|scaffold_201308 (120367-120227) | |
| 1105-1210, gnl|panTro1|chr6 (118711404-118711549) | |
| 1105-1210, gnl|rheMac2|chr3 (154522297-154522442) | |
| 1105-1210, gnl|rn3|chr4 (43722929-43723072) | |
| 1105-1210, gnl|tetNig1|chr13 (10709633-10709762) | |
| 1105-1210, gnl|xenTro1|scaffold_17 (2220505-2220642) | |
| 1215-1361, gnl|bosTau2|chr4 (26420327-26420181) | |
| 1215-1361, gnl|canFam2|chr14 (59038637-59038852) | |
| 1215-1361, gnl|danRer3|chrNA (127648305-127648091) | |
| 1215-1361, gnl|dasNov1|scaffold_6649 (43785-43998) | |
| 1215-1361, gnl|echTel1|scaffold_306559 (15880-15664) | |
| 1215-1361, gnl|fr1|chrUn (231854258-231854098) | |
| 1215-1361, gnl|galGal2|chr1 (21696808-21696578) | |
| 1215-1361, gnl|hg17|chr7 (116443774-116443985) | |
| 1215-1361, gnl|Hg17|chr7 (116443796-116443942) | |
| 1215-1361, gnl|loxAfr1|scaffold_999 (54028-54241) | |
| 1215-1361, gnl|mm7|chr6 (17862426-17862638) | |
| 1215-1361, gnl|Mm7|chr6 (17862449-17862595) | |
| 1215-1361, gnl|monDom2|scaffold_22 (31679241-31679012) | |
| 1215-1361, gnl|oryCun1|scaffold_201308 (101529-101315) | |
| 1215-1361, gnl|panTro1|chr6 (118730312-118730523) | |
| 1215-1361, gnl|rheMac2|chr3 (154540934-154541145) | |
| 1215-1361, gnl|rn3|chr4 (43744384-43744595) | |
| 1215-1361, gnl|tetNig1|chr13 (10709897-10710069) | |
| 1215-1361, gnl|xenTro1|scaffold_17 (2222801-2223012) |
| Aligned organism(s): 100 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 46-180, gnl|bosTau2|chr4 (25859947-25859803) | |
| 46-180, gnl|Hg17|chr7 (116254494-116254639) | |
| 46-180, gnl|Mm7|chr6 (17689922-17690075) | |
| 259-429, gnl|bosTau2|chr4 (26507412-26507241) | |
| 259-429, gnl|canFam2|chr14 (58951759-58951904) | |
| 259-429, gnl|danRer3|chrNA (127665466-127665330) | |
| 259-429, gnl|dasNov1|scaffold_44187 (6210-6066) | |
| 259-429, gnl|echTel1|scaffold_278457 (3383-3525) | |
| 259-429, gnl|fr1|chrUn (231857006-231856868) | |
| 259-429, gnl|galGal2|chr1 (21738761-21738619) | |
| 259-429, gnl|hg17|chr7 (116353550-116353692) | |
| 259-429, gnl|Hg17|chr7 (116353565-116353736) | |
| 259-429, gnl|loxAfr1|scaffold_142049 (5367-5512) | |
| 259-429, gnl|mm7|chr6 (17775058-17775199) | |
| 259-429, gnl|Mm7|chr6 (17775072-17775243) | |
| 259-429, gnl|monDom2|scaffold_22 (31787941-31787786) | |
| 259-429, gnl|oryCun1|scaffold_213083 (107759-107904) | |
| 259-429, gnl|panTro1|chr6 (118641073-118641215) | |
| 259-429, gnl|rheMac2|chr3 (154445961-154446103) | |
| 259-429, gnl|rn3|chr4 (43655199-43655340) | |
| 259-429, gnl|tetNig1|chr13 (10707259-10707403) | |
| 259-429, gnl|xenTro1|scaffold_17 (2206462-2206609) | |
| 474-613, gnl|bosTau2|chr4 (26496400-26496262) | |
| 474-613, gnl|canFam2|chr14 (58962472-58962612) | |
| 474-613, gnl|danRer3|chrNA (127663274-127663155) | |
| 474-613, gnl|dasNov1|scaffold_9074 (55480-55341) | |
| 474-613, gnl|echTel1|scaffold_278457 (15943-16083) | |
| 474-613, gnl|fr1|chrUn (231856074-231855954) | |
| 474-613, gnl|galGal2|chr1 (21735152-21735027) | |
| 474-613, gnl|hg17|chr7 (116364495-116364634) | |
| 474-613, gnl|Hg17|chr7 (116364495-116364632) | |
| 474-613, gnl|loxAfr1|scaffold_18927 (43013-43125) | |
| 474-613, gnl|mm7|chr6 (17786654-17786794) | |
| 474-613, gnl|Mm7|chr6 (17786654-17786792) | |
| 474-613, gnl|monDom2|scaffold_22 (31767526-31767382) | |
| 474-613, gnl|oryCun1|scaffold_143769 (239-350) | |
| 474-613, gnl|panTro1|chr6 (118651927-118652066) | |
| 474-613, gnl|rheMac2|chr3 (154456833-154456972) | |
| 474-613, gnl|rn3|chr4 (43666620-43666760) | |
| 474-613, gnl|tetNig1|chr13 (10708254-10708374) | |
| 667-822, gnl|bosTau2|chr4 (26491500-26491345) | |
| 667-822, gnl|Hg17|chr7 (116370086-116370241) | |
| 667-822, gnl|Mm7|chr6 (17792714-17792869) | |
| 920-1037, gnl|bosTau2|chr4 (26462155-26462038) | |
| 920-1037, gnl|canFam2|chr14 (58999492-58999613) | |
| 920-1037, gnl|danRer3|chrNA (127656241-127656120) | |
| 920-1037, gnl|dasNov1|scaffold_37987 (8914-8793) | |
| 920-1037, gnl|echTel1|scaffold_301719 (2558-2679) | |
| 920-1037, gnl|fr1|chrUn (231855150-231855029) | |
| 920-1037, gnl|galGal2|chr1 (21717430-21717309) | |
| 920-1037, gnl|hg17|chr7 (116404866-116404987) | |
| 920-1037, gnl|Hg17|chr7 (116404867-116404984) | |
| 920-1037, gnl|loxAfr1|scaffold_71727 (8201-8080) | |
| 920-1037, gnl|mm7|chr6 (17826459-17826580) | |
| 920-1037, gnl|Mm7|chr6 (17826460-17826577) | |
| 920-1037, gnl|monDom2|scaffold_22 (31731297-31731176) | |
| 920-1037, gnl|oryCun1|scaffold_201308 (143511-143389) | |
| 920-1037, gnl|panTro1|chr6 (118692351-118692472) | |
| 920-1037, gnl|rheMac2|chr3 (154502110-154502231) | |
| 920-1037, gnl|rn3|chr4 (43704843-43704964) | |
| 920-1037, gnl|tetNig1|chr13 (10709137-10709258) | |
| 920-1037, gnl|xenTro1|scaffold_17 (2216953-2217074) | |
| 1105-1210, gnl|bosTau2|chr4 (26437717-26437612) | |
| 1105-1210, gnl|canFam2|chr14 (59020697-59020842) | |
| 1105-1210, gnl|danRer3|chrNA (127655856-127655712) | |
| 1105-1210, gnl|dasNov1|scaffold_10178 (6655-6800) | |
| 1105-1210, gnl|echTel1|scaffold_280323 (9065-8920) | |
| 1105-1210, gnl|fr1|chrUn (231854542-231854428) | |
| 1105-1210, gnl|galGal2|chr1 (21706391-21706246) | |
| 1105-1210, gnl|hg17|chr7 (116424811-116424956) | |
| 1105-1210, gnl|Hg17|chr7 (116424836-116424941) | |
| 1105-1210, gnl|loxAfr1|scaffold_999 (42495-42636) | |
| 1105-1210, gnl|mm7|chr6 (17846836-17846979) | |
| 1105-1210, gnl|Mm7|chr6 (17846861-17846966) | |
| 1105-1210, gnl|monDom2|scaffold_22 (31707662-31707513) | |
| 1105-1210, gnl|oryCun1|scaffold_201308 (120367-120227) | |
| 1105-1210, gnl|panTro1|chr6 (118711404-118711549) | |
| 1105-1210, gnl|rheMac2|chr3 (154522297-154522442) | |
| 1105-1210, gnl|rn3|chr4 (43722929-43723072) | |
| 1105-1210, gnl|tetNig1|chr13 (10709633-10709762) | |
| 1105-1210, gnl|xenTro1|scaffold_17 (2220505-2220642) | |
| 1215-1361, gnl|bosTau2|chr4 (26420327-26420181) | |
| 1215-1361, gnl|canFam2|chr14 (59038637-59038852) | |
| 1215-1361, gnl|danRer3|chrNA (127648305-127648091) | |
| 1215-1361, gnl|dasNov1|scaffold_6649 (43785-43998) | |
| 1215-1361, gnl|echTel1|scaffold_306559 (15880-15664) | |
| 1215-1361, gnl|fr1|chrUn (231854258-231854098) | |
| 1215-1361, gnl|galGal2|chr1 (21696808-21696578) | |
| 1215-1361, gnl|hg17|chr7 (116443774-116443985) | |
| 1215-1361, gnl|Hg17|chr7 (116443796-116443942) | |
| 1215-1361, gnl|loxAfr1|scaffold_999 (54028-54241) | |
| 1215-1361, gnl|mm7|chr6 (17862426-17862638) | |
| 1215-1361, gnl|Mm7|chr6 (17862449-17862595) | |
| 1215-1361, gnl|monDom2|scaffold_22 (31679241-31679012) | |
| 1215-1361, gnl|oryCun1|scaffold_201308 (101529-101315) | |
| 1215-1361, gnl|panTro1|chr6 (118730312-118730523) | |
| 1215-1361, gnl|rheMac2|chr3 (154540934-154541145) | |
| 1215-1361, gnl|rn3|chr4 (43744384-43744595) | |
| 1215-1361, gnl|tetNig1|chr13 (10709897-10710069) | |
| 1215-1361, gnl|xenTro1|scaffold_17 (2222801-2223012) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nlu (0.191681) | |
| nep (0.183925) | |
| ebs (0.118301) |