Non-Coding RNA Search

Ss1.1-Pig4-TMW8054P04.5

Sequence:


               
               AGTATTTAAGAATAACAGTTACCTACTTGTAAATATGCTGTTAACCAAGAGAGCTTCCCC
TCCCCCCCACCTTTCCTTTGTCCACACTCACGACTGCTTCTGTCTCTAGCCTGCCATTGC
CGTCATCTCTGCATCACATCCCTTTCGTGGTCACTAGAGGGCTCTCTGATGCTTTCTAAA
AGAGCAACGTTTTTCTGGTTTTTTTGGGTTTTTTTTTTTTTCCCTAATCGAAGCGGTTCC
TGTCTTCTCCGCGTCTGTGTTTAATTGCACCGAAAGAGACGAGCACAAACATTGCCAGTC
CATGTTCTCCACTTTCATTTTCCACTAGAAAGGAAAAGCAATTTTCCAGATTGAATCTGT
GGCTATTTTAAAGGTGACTGTGGGAAACTGCACTAAAGGAGGTAGCATCTTTATTTTTGT
ATCAAAGATAAAGCTTATTTTGAGATTATTAGGATTTTTACACAACTCTGAAATCTGTTG
CTTTTGTAAACAGGTTGTTTGATCTTAGGGATCCCCCACGACCACCACCAACCCACTTGA
CAAAGTCAGTTGAGCGTCTACCAGGCTTTGTTCTGGAAACAAACACCTGATCCAACTCTT
GAGCATGGCATGAGAATTTTTTAAAAGAACGCATTTAAGGATTCTTTTCCTTTCCTTCAG
TGTCATTAATGTGGAGAAGAAGAGCCACTGTCTTGTTGAAATAAACAGCTTAACTTTAGA
AATAAGACCAAGCACACTCAGACCAACAGGAGAGCAGGGGTTTGAAGCCAGCTGTTGAAG
GGCGTCCCTGCTGTCTTAAGAAGCTTTCTCCCCATAGTGCCTATAGTTTCCAAAGAAACT
TAACTTCCTAACTGTGTTAATTTTATTGGAACACTGCAATTGAGCGAGGGCATGCAGCAG
TTGTCAGTGCAAGAGAATATTGTGCTAAGATAATGGCCTCCTGCTGCTGCCTAAATGGTG
AGCTGAGGTTGAGGTGTTTTCAAGGCCAGCTTCACCGCGTGGAGTCACTCAGCTCGGTGA
CTTAATTGTATTACACCAATTACTGATGGTGAGTTACTCACCCTCGTGCAGAGTTGGCCT
GGCAGTGTAAAGGTTACTTATTACTCCCTTTCTCTGAAGTGCTTTGAAGAAGAAACTTCC
CTTGTGTTTCAACCAGTCAGGAGCTGGTTTGTCTAGACATGCTAATCTTTTTTCCCTTAT
CTTTGGAAAAAGAAAAAAAAAAGTTGCAATTTACTGATACAATTAAGGCTAGTTTTATCC
TGGAATACATGAATTCAGTATTAATTTCTGTCTCAACCCCTGGGGTTAGTACACTTCCAG
CCATCCAGATCAATTAGGGATTCTCAGAAGCTGTGGAGGCCCCTGGCTGGGAGGTGGCCT
ACAGAGGAGCAGCTCCAGGGCATTTCCCGGGCCTGGAACCTGGGCCGAGGGGGAGTCACA
AGTGAGAGATGGGCCTGCCCTGCCCTCTCTCCTCCCTTTTAAGGTCCTCTGTGGTCAGCT
GACTCTTGAGTAAGGCAGTGGAATTAGACTGCACAGTTGCTGGTAGGTGAGCTTAACGTC
TTAATCTATGCATTCAGAGAAATATTTTTATATGGTTTGTGTAATTTATAACAAGGATTT
TTTTTTTTTTTTAGCTTTGTTAACTGTGAATTCACCCCTCTTCCTCCACTGCATATTTAA
AGCATGTGTTCACACTGTGTGTAAACATTAACTGAAGATTTTTCTCTTTGCGCATCGCTG
ACTGTTCAAGGATAATAAGTATTATTAAAATTAAATATTAACCGAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTATTTAAGAATAACAGTTACCTACTTGTAAATATGCTGTTAACCAAGAGAGCTTCCCC
TCCCCCCCACCTTTCCTTTGTCCACACTCACGACTGCTTCTGTCTCTAGCCTGCCATTGC
CGTCATCTCTGCATCACATCCCTTTCGTGGTCACTAGAGGGCTCTCTGATGCTTTCTAAA
AGAGCAACGTTTTTCTGGTTTTTTTGGGTTTTTTTTTTTTTCCCTAATCGAAGCGGTTCC
TGTCTTCTCCGCGTCTGTGTTTAATTGCACCGAAAGAGACGAGCACAAACATTGCCAGTC
CATGTTCTCCACTTTCATTTTCCACTAGAAAGGAAAAGCAATTTTCCAGATTGAATCTGT
GGCTATTTTAAAGGTGACTGTGGGAAACTGCACTAAAGGAGGTAGCATCTTTATTTTTGT
ATCAAAGATAAAGCTTATTTTGAGATTATTAGGATTTTTACACAACTCTGAAATCTGTTG
CTTTTGTAAACAGGTTGTTTGATCTTAGGGATCCCCCACGACCACCACCAACCCACTTGA
CAAAGTCAGTTGAGCGTCTACCAGGCTTTGTTCTGGAAACAAACACCTGATCCAACTCTT
GAGCATGGCATGAGAATTTTTTAAAAGAACGCATTTAAGGATTCTTTTCCTTTCCTTCAG
TGTCATTAATGTGGAGAAGAAGAGCCACTGTCTTGTTGAAATAAACAGCTTAACTTTAGA
AATAAGACCAAGCACACTCAGACCAACAGGAGAGCAGGGGTTTGAAGCCAGCTGTTGAAG
GGCGTCCCTGCTGTCTTAAGAAGCTTTCTCCCCATAGTGCCTATAGTTTCCAAAGAAACT
TAACTTCCTAACTGTGTTAATTTTATTGGAACACTGCAATTGAGCGAGGGCATGCAGCAG
TTGTCAGTGCAAGAGAATATTGTGCTAAGATAATGGCCTCCTGCTGCTGCCTAAATGGTG
AGCTGAGGTTGAGGTGTTTTCAAGGCCAGCTTCACCGCGTGGAGTCACTCAGCTCGGTGA
CTTAATTGTATTACACCAATTACTGATGGTGAGTTACTCACCCTCGTGCAGAGTTGGCCT
GGCAGTGTAAAGGTTACTTATTACTCCCTTTCTCTGAAGTGCTTTGAAGAAGAAACTTCC
CTTGTGTTTCAACCAGTCAGGAGCTGGTTTGTCTAGACATGCTAATCTTTTTTCCCTTAT
CTTTGGAAAAAGAAAAAAAAAAGTTGCAATTTACTGATACAATTAAGGCTAGTTTTATCC
TGGAATACATGAATTCAGTATTAATTTCTGTCTCAACCCCTGGGGTTAGTACACTTCCAG
CCATCCAGATCAATTAGGGATTCTCAGAAGCTGTGGAGGCCCCTGGCTGGGAGGTGGCCT
ACAGAGGAGCAGCTCCAGGGCATTTCCCGGGCCTGGAACCTGGGCCGAGGGGGAGTCACA
AGTGAGAGATGGGCCTGCCCTGCCCTCTCTCCTCCCTTTTAAGGTCCTCTGTGGTCAGCT
GACTCTTGAGTAAGGCAGTGGAATTAGACTGCACAGTTGCTGGTAGGTGAGCTTAACGTC
TTAATCTATGCATTCAGAGAAATATTTTTATATGGTTTGTGTAATTTATAACAAGGATTT
TTTTTTTTTTTTAGCTTTGTTAACTGTGAATTCACCCCTCTTCCTCCACTGCATATTTAA
AGCATGTGTTCACACTGTGTGTAAACATTAACTGAAGATTTTTCTCTTTGCGCATCGCTG
ACTGTTCAAGGATAATAAGTATTATTAAAATTAAATATTAACCGAAAAAAAAAAAAAAAA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               427-583, gnl|bosTau2|chr18 (51669053-51668897)
               

               
               427-583, gnl|Hg17|chr17 (46127228-46127081)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               427-583, gnl|bosTau2|chr18 (51669053-51668897)
               

               
               427-583, gnl|Hg17|chr17 (46127228-46127081)

Expressed library(ies): 22 entry(ies)

More info

Expressed library(ies): 22 entry(ies)

Help | Less info


               
               ill (0.351185)
               

               
               fhi (0.339155)
               

               
               nco (0.323468)
               

               
               cty (0.31224)
               

               
               fce (0.271592)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               fbs (0.175346)
               

               
               tbr (0.154178)
               

               
               ski (0.146735)
               

               
               hyp (0.142837)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)
               

               
               cbl (0.114797)
               

               
               ldo (0.0970026)

Expressed library(ies): 22 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.351185)
               

               
               fhi (0.339155)
               

               
               nco (0.323468)
               

               
               cty (0.31224)
               

               
               fce (0.271592)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               fbs (0.175346)
               

               
               tbr (0.154178)
               

               
               ski (0.146735)
               

               
               hyp (0.142837)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)
               

               
               cbl (0.114797)
               

               
               ldo (0.0970026)

	427-583, gnl\|bosTau2\|chr18 (51669053-51668897)
	427-583, gnl\|Hg17\|chr17 (46127228-46127081)

	ill (0.351185)
	fhi (0.339155)
	nco (0.323468)
	cty (0.31224)
	fce (0.271592)
	hea (0.204499)
	fcc (0.197785)
	cmu (0.186393)
	sto (0.179824)
	fbs (0.175346)
	tbr (0.154178)
	ski (0.146735)
	hyp (0.142837)
	che (0.136314)
	pla (0.133672)
	lyg (0.133103)
	ova (0.129132)
	sug (0.127291)
	eep (0.122564)
	pgl (0.118483)
	cbl (0.114797)
	ldo (0.0970026)