Non-Coding RNA Search

Ss1.1-Pig4-TMW8054P07.3

Sequence:


               
               ACACACACACACACACACACACACACACACGGCTGTTTGTGTGGGGGTGGAAGTGAGGCT
GTGGCTGACGGACATGGAGGTCCAGGCCTGGGTCAGGAAGTGGGTTTGTGAGAGACCTAG
GGCTCTGTGCACACGTGGGTGTGTGTACGTGTGTTTGTGTGAGAGAAGTGTGTGTGCGGG
GGGGTAGGGTGTGTGTGTTAGGGGGGTAGGGTGTGTGCTCCGGGTGTCTGCCCTCATCCT
CCCAGAGCCTCCCCTGACCGAGCCAGCCAGGCCCACAGCAGGCCCAGCGCCCAGGAGCCA
GCCTTGCTGCGGGGCCGCAGCGCCCCCTGCCGGCAGACTCTCCAGGGCCCTGGAGCTGCT
CCGTGGGAGCCCCTCTGGCCGGAGGGCCTGGCTCACCAACCCACCCACCTTGACCGCCCT
CAGAGATGGGAGCCTTCCTGGAGCTCTGAGAGGAGTGGGTTGATCATGAGGTTGATTGTT
TTGGTTCTTTTAAGTTTTGTTAGACGCCTTTTTATAAAGCAATAAATCCATTTCCTCCTG
GGAAGGGATGCCCCTCCTGGCATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACACACACACACACACACACACACACACACGGCTGTTTGTGTGGGGGTGGAAGTGAGGCT
GTGGCTGACGGACATGGAGGTCCAGGCCTGGGTCAGGAAGTGGGTTTGTGAGAGACCTAG
GGCTCTGTGCACACGTGGGTGTGTGTACGTGTGTTTGTGTGAGAGAAGTGTGTGTGCGGG
GGGGTAGGGTGTGTGTGTTAGGGGGGTAGGGTGTGTGCTCCGGGTGTCTGCCCTCATCCT
CCCAGAGCCTCCCCTGACCGAGCCAGCCAGGCCCACAGCAGGCCCAGCGCCCAGGAGCCA
GCCTTGCTGCGGGGCCGCAGCGCCCCCTGCCGGCAGACTCTCCAGGGCCCTGGAGCTGCT
CCGTGGGAGCCCCTCTGGCCGGAGGGCCTGGCTCACCAACCCACCCACCTTGACCGCCCT
CAGAGATGGGAGCCTTCCTGGAGCTCTGAGAGGAGTGGGTTGATCATGAGGTTGATTGTT
TTGGTTCTTTTAAGTTTTGTTAGACGCCTTTTTATAAAGCAATAAATCCATTTCCTCCTG
GGAAGGGATGCCCCTCCTGGCATG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               369-563, - strand, RNAz p=0.971196

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               369-563, - strand, RNAz p=0.971196

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               411-564, - strand, RNAmicro p=0.99995

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               411-564, - strand, RNAmicro p=0.99995

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-563, gnl|bosTau2|chr19 (17232403-17231836)
               

               
               1-563, gnl|Hg17|chr17 (1424911-1424427)
               

               
               1-563, gnl|Mm7|chr11 (75654844-75655372)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-563, gnl|bosTau2|chr19 (17232403-17231836)
               

               
               1-563, gnl|Hg17|chr17 (1424911-1424427)
               

               
               1-563, gnl|Mm7|chr11 (75654844-75655372)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	1-563, gnl\|bosTau2\|chr19 (17232403-17231836)
	1-563, gnl\|Hg17\|chr17 (1424911-1424427)
	1-563, gnl\|Mm7\|chr11 (75654844-75655372)