Non-Coding RNA Search

Ss1.1-Pig4-TMW8054P07.5

Sequence:


               
               CGGACCTCTGCCCGCAGGGCCTGACCAGGGAGCACGTTTCCACTGCCACCCTCTGTCCAG
TCTGTGACCTGAAGGGAGTGAAAAGGGCACCAATAGCCACACACACACACACACACACTC
TCTCTCTCTCACACACACACACACACACACACACACACACACGGCTGTTTGTGTGGGGGT
GGAAGTGAGGCTGTGACTGACGGACATGGAGGTCCAGGCCTGGGTCAGGAAGTGGGTTTG
TGAGAGACCTAGGGCTCTGTGCACACGTGGGTGTGTGTACGTGTGTTTGTGTGAGAGAAG
TGTGTGTGCGGGGGGGTAGGGTGTGTGTGTTACGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGACCTCTGCCCGCAGGGCCTGACCAGGGAGCACGTTTCCACTGCCACCCTCTGTCCAG
TCTGTGACCTGAAGGGAGTGAAAAGGGCACCAATAGCCACACACACACACACACACACTC
TCTCTCTCTCACACACACACACACACACACACACACACACACGGCTGTTTGTGTGGGGGT
GGAAGTGAGGCTGTGACTGACGGACATGGAGGTCCAGGCCTGGGTCAGGAAGTGGGTTTG
TGAGAGACCTAGGGCTCTGTGCACACGTGGGTGTGTGTACGTGTGTTTGTGTGAGAGAAG
TGTGTGTGCGGGGGGGTAGGGTGTGTGTGTTACGGG

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               127-325, gnl|bosTau2|chr19 (17232409-17232209)
               

               
               127-325, gnl|canFam2|chr9 (49060542-49060750)
               

               
               127-325, gnl|dasNov1|scaffold_10129 (13717-13518)
               

               
               127-325, gnl|echTel1|scaffold_324085 (2559-2783)
               

               
               127-325, gnl|hg17|chr17 (1424717-1424871)
               

               
               127-325, gnl|loxAfr1|scaffold_45135 (6578-6353)
               

               
               127-325, gnl|mm7|chr11 (75655080-75654889)
               

               
               127-325, gnl|monDom2|scaffold_86 (2768372-2768505)
               

               
               127-325, gnl|oryCun1|scaffold_210283 (15575-15401)
               

               
               127-325, gnl|panTro1|chr19 (1566818-1566971)
               

               
               127-325, gnl|rheMac2|chr16 (1373471-1373626)
               

               
               127-325, gnl|rn3|chr10 (62906754-62906559)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               127-325, gnl|bosTau2|chr19 (17232409-17232209)
               

               
               127-325, gnl|canFam2|chr9 (49060542-49060750)
               

               
               127-325, gnl|dasNov1|scaffold_10129 (13717-13518)
               

               
               127-325, gnl|echTel1|scaffold_324085 (2559-2783)
               

               
               127-325, gnl|hg17|chr17 (1424717-1424871)
               

               
               127-325, gnl|loxAfr1|scaffold_45135 (6578-6353)
               

               
               127-325, gnl|mm7|chr11 (75655080-75654889)
               

               
               127-325, gnl|monDom2|scaffold_86 (2768372-2768505)
               

               
               127-325, gnl|oryCun1|scaffold_210283 (15575-15401)
               

               
               127-325, gnl|panTro1|chr19 (1566818-1566971)
               

               
               127-325, gnl|rheMac2|chr16 (1373471-1373626)
               

               
               127-325, gnl|rn3|chr10 (62906754-62906559)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nco (0.161734)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)

	127-325, gnl\|bosTau2\|chr19 (17232409-17232209)
	127-325, gnl\|canFam2\|chr9 (49060542-49060750)
	127-325, gnl\|dasNov1\|scaffold_10129 (13717-13518)
	127-325, gnl\|echTel1\|scaffold_324085 (2559-2783)
	127-325, gnl\|hg17\|chr17 (1424717-1424871)
	127-325, gnl\|loxAfr1\|scaffold_45135 (6578-6353)
	127-325, gnl\|mm7\|chr11 (75655080-75654889)
	127-325, gnl\|monDom2\|scaffold_86 (2768372-2768505)
	127-325, gnl\|oryCun1\|scaffold_210283 (15575-15401)
	127-325, gnl\|panTro1\|chr19 (1566818-1566971)
	127-325, gnl\|rheMac2\|chr16 (1373471-1373626)
	127-325, gnl\|rn3\|chr10 (62906754-62906559)