Ss1.1-Pig4-TMW8054P14.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCAAGGCAACAATGCTTTTAATTGCATTGTTATGATGGTACATTTGATTGAAGCAGCCTG TCTTTATTATGCAAGCCTTTTTTAAGCTTAGAGCTTTTTTTTTTTTTTTGTATATATTTT TTGTTATTATAAAGGAAGACAGAACAAACTGGAATGTTTTATGATATTGTATGGCAGTTG TGAGGTTTTTTTTTGTTTTGTTTTTTGCCTTTCAGAGTTCCGGGTAAAAAGACGGTAGAT CTGTAATTAAAGTTTTTTTTAAAAAGCACTACATCTGTTTTCACTACCTGTTCATTTCTG GCTTGAACCCTTCCTTTAGTTAATTCTCACGGATTTTGCACGGTGCACTTCCCGTGTCTA TTTTAACACAATCCTCCCATGATCAGCCTTTGGCTGCTTGGGGCCAGCTATAAACTGTGT TCAAGTGGATTCGCGTCAACACTTGAACACGAGTCCCACACTAATCTATCAGGTTCACTG GTACATAAAGATCTAGGAAATATTTTTCCAGGCTCCAATTGGGTGGCGCTGCTGTGCAGT AATTGATACTGCTTTTGCCAGAGGAGAAACTACATTAACTTCCCTGCCAGTATCCTTTCC TAGTTACTTGCTCTTTACAAACTAAAAAAAAAAAAAGGAAAAGAAAGCAACTGAGAGAAA GGAAAACATTGTAGATATCTATTTATAAAATATTTCAGGCTTATGTTTCATGAACTTAGC TGCAGGATCCTGGCCTTTGGCCTGCCATTCTCCAGCAGATCCGACTTTGAGGGGCGGCAA CTCAGAAATGTGTCCACGGACTGAGCGTTACTCTGATCTGGGAAGGGGTGGGTAACCTGT GCAGCTTGGAATGTGCTGTCTGGGATGTATGAGATTCGGTTCACTCGCTCGATGACCTTG GTCTCGTTGCAGCGCAGCTGTACATATTGTATAACCTAAATCAGTTCTTATTTTCATCGT CCTGATGCAGTGACCTATAACTAGAGCATGTGTAATAAGTTTACTCTAATTGTTAACTAG TCATTTGACTGGAAAAAAAATAAAATACTTTTAAATGGAAAAAAAAAATCTATAGTTCTC TTTTCCTAATTGTTGTCAGTAAATTATTACCCTTGACATTTATTGTACACAGCTTTGCAG CACCCCATAATAAATATAACAAAATAATGTAACTTCAGTCTGATGCTTGACAAAGAGTAG GTGATTCTAATAATTCTACTCCAATTCAGTTTAGCTTTCTTTATCGTGACTTCTTGTTTA CAGATTTGAAAAAAACATGATATTCACATTGATTACAATAACTCAAAAATGATTGTAACA TTGAAACATCACTTAGTATACAAGAACATAACACACGAATATAGGCACATAAATATACAT ATATATATTCACCAAGAACTATGGTTCCTATAAAATACTAATATATAAATTGTCAATATC TGACATTGTGTACATTTTTAGCAAATAAAACAAAATCCAGAACCATTTTTTGTTACTGTT TTTAAGAGAAAGAGGAAGGAAAAAAAAAGAGCCAAGGGGTAATATTTCAAGGGATTATGT ATTTTGAGTTAAACTCTCCTGGTTTGGCTCTGGGTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCAAGGCAACAATGCTTTTAATTGCATTGTTATGATGGTACATTTGATTGAAGCAGCCTG TCTTTATTATGCAAGCCTTTTTTAAGCTTAGAGCTTTTTTTTTTTTTTTGTATATATTTT TTGTTATTATAAAGGAAGACAGAACAAACTGGAATGTTTTATGATATTGTATGGCAGTTG TGAGGTTTTTTTTTGTTTTGTTTTTTGCCTTTCAGAGTTCCGGGTAAAAAGACGGTAGAT CTGTAATTAAAGTTTTTTTTAAAAAGCACTACATCTGTTTTCACTACCTGTTCATTTCTG GCTTGAACCCTTCCTTTAGTTAATTCTCACGGATTTTGCACGGTGCACTTCCCGTGTCTA TTTTAACACAATCCTCCCATGATCAGCCTTTGGCTGCTTGGGGCCAGCTATAAACTGTGT TCAAGTGGATTCGCGTCAACACTTGAACACGAGTCCCACACTAATCTATCAGGTTCACTG GTACATAAAGATCTAGGAAATATTTTTCCAGGCTCCAATTGGGTGGCGCTGCTGTGCAGT AATTGATACTGCTTTTGCCAGAGGAGAAACTACATTAACTTCCCTGCCAGTATCCTTTCC TAGTTACTTGCTCTTTACAAACTAAAAAAAAAAAAAGGAAAAGAAAGCAACTGAGAGAAA GGAAAACATTGTAGATATCTATTTATAAAATATTTCAGGCTTATGTTTCATGAACTTAGC TGCAGGATCCTGGCCTTTGGCCTGCCATTCTCCAGCAGATCCGACTTTGAGGGGCGGCAA CTCAGAAATGTGTCCACGGACTGAGCGTTACTCTGATCTGGGAAGGGGTGGGTAACCTGT GCAGCTTGGAATGTGCTGTCTGGGATGTATGAGATTCGGTTCACTCGCTCGATGACCTTG GTCTCGTTGCAGCGCAGCTGTACATATTGTATAACCTAAATCAGTTCTTATTTTCATCGT CCTGATGCAGTGACCTATAACTAGAGCATGTGTAATAAGTTTACTCTAATTGTTAACTAG TCATTTGACTGGAAAAAAAATAAAATACTTTTAAATGGAAAAAAAAAATCTATAGTTCTC TTTTCCTAATTGTTGTCAGTAAATTATTACCCTTGACATTTATTGTACACAGCTTTGCAG CACCCCATAATAAATATAACAAAATAATGTAACTTCAGTCTGATGCTTGACAAAGAGTAG GTGATTCTAATAATTCTACTCCAATTCAGTTTAGCTTTCTTTATCGTGACTTCTTGTTTA CAGATTTGAAAAAAACATGATATTCACATTGATTACAATAACTCAAAAATGATTGTAACA TTGAAACATCACTTAGTATACAAGAACATAACACACGAATATAGGCACATAAATATACAT ATATATATTCACCAAGAACTATGGTTCCTATAAAATACTAATATATAAATTGTCAATATC TGACATTGTGTACATTTTTAGCAAATAAAACAAAATCCAGAACCATTTTTTGTTACTGTT TTTAAGAGAAAGAGGAAGGAAAAAAAAAGAGCCAAGGGGTAATATTTCAAGGGATTATGT ATTTTGAGTTAAACTCTCCTGGTTTGGCTCTGGGTA |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 537-652, - strand, RNAz p=0.625441 | |
| 538-629, - strand, RNAz p=0.934979 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 537-652, - strand, RNAz p=0.625441 | |
| 538-629, - strand, RNAz p=0.934979 |
| Aligned organism(s): 47 entry(ies) | More info |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
| 1-328, gnl|bosTau2|chr11 (69780573-69780894) | |
| 1-328, gnl|Hg17|chr2 (9495378-9495683) | |
| 1-328, gnl|Mm7|chr12 (19628484-19628830) | |
| 383-1059, gnl|bosTau2|chr11 (69780988-69781639) | |
| 383-1059, gnl|canFam2|chr17 (9496506-9497021) | |
| 383-1059, gnl|echTel1|scaffold_286478 (81779-82269) | |
| 383-1059, gnl|galGal2|chr3 (94444587-94445078) | |
| 383-1059, gnl|hg17|chr2 (9495747-9496253) | |
| 383-1059, gnl|Hg17|chr2 (9495766-9496405) | |
| 383-1059, gnl|loxAfr1|scaffold_265 (10872-10362) | |
| 383-1059, gnl|mm7|chr12 (19628899-19629421) | |
| 383-1059, gnl|Mm7|chr12 (19628938-19629576) | |
| 383-1059, gnl|monDom2|scaffold_1 (127133433-127133955) | |
| 383-1059, gnl|oryCun1|scaffold_173095 (57811-58332) | |
| 383-1059, gnl|panTro1|chr12 (10141308-10141809) | |
| 383-1059, gnl|rheMac2|chr13 (9500510-9501015) | |
| 383-1059, gnl|rn3|chr6 (41832223-41832753) | |
| 1069-1238, gnl|bosTau2|chr16 (28318326-28318166) | |
| 1069-1238, gnl|canFam2|chr7 (29784601-29784387) | |
| 1069-1238, gnl|danRer3|chr3 (43221243-43221046) | |
| 1069-1238, gnl|dasNov1|scaffold_1250 (76056-76326) | |
| 1069-1238, gnl|echTel1|scaffold_320562 (115931-115737) | |
| 1069-1238, gnl|hg17|chr1 (168839063-168839318) | |
| 1069-1238, gnl|Hg17|chr1 (168839368-168839184) | |
| 1069-1238, gnl|mm7|chr1 (162185237-162184982) | |
| 1069-1238, gnl|Mm7|chr1 (162184945-162185115) | |
| 1069-1238, gnl|monDom2|scaffold_16 (23241704-23241916) | |
| 1069-1238, gnl|oryCun1|scaffold_201478 (36426-36703) | |
| 1069-1238, gnl|panTro1|chr1 (151166807-151167069) | |
| 1069-1238, gnl|rheMac2|chr1 (201832504-201832738) | |
| 1069-1238, gnl|rn3|chr13 (77930991-77930752) | |
| 1260-1500, gnl|bosTau2|chr29 (29033645-29033405) | |
| 1260-1500, gnl|canFam2|chr5 (7644383-7644136) | |
| 1260-1500, gnl|dasNov1|scaffold_9948 (68540-68306) | |
| 1260-1500, gnl|echTel1|scaffold_52914 (424-190) | |
| 1260-1500, gnl|galGal2|chr24 (1600283-1600510) | |
| 1260-1500, gnl|hg17|chr11 (129602096-129602330) | |
| 1260-1500, gnl|Hg17|chr11 (129602118-129602358) | |
| 1260-1500, gnl|loxAfr1|scaffold_11434 (47217-46966) | |
| 1260-1500, gnl|mm7|chr9 (30975138-30974887) | |
| 1260-1500, gnl|Mm7|chr9 (30975116-30974856) | |
| 1260-1500, gnl|monDom2|scaffold_15 (19196468-19196714) | |
| 1260-1500, gnl|oryCun1|scaffold_208798 (73892-73639) | |
| 1260-1500, gnl|panTro1|chr9 (131730972-131731210) | |
| 1260-1500, gnl|rheMac2|chr14 (128287061-128287306) | |
| 1260-1500, gnl|rn3|chr8 (30908430-30908191) | |
| 1260-1500, gnl|xenTro1|scaffold_795 (455054-455297) |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-328, gnl|bosTau2|chr11 (69780573-69780894) | |
| 1-328, gnl|Hg17|chr2 (9495378-9495683) | |
| 1-328, gnl|Mm7|chr12 (19628484-19628830) | |
| 383-1059, gnl|bosTau2|chr11 (69780988-69781639) | |
| 383-1059, gnl|canFam2|chr17 (9496506-9497021) | |
| 383-1059, gnl|echTel1|scaffold_286478 (81779-82269) | |
| 383-1059, gnl|galGal2|chr3 (94444587-94445078) | |
| 383-1059, gnl|hg17|chr2 (9495747-9496253) | |
| 383-1059, gnl|Hg17|chr2 (9495766-9496405) | |
| 383-1059, gnl|loxAfr1|scaffold_265 (10872-10362) | |
| 383-1059, gnl|mm7|chr12 (19628899-19629421) | |
| 383-1059, gnl|Mm7|chr12 (19628938-19629576) | |
| 383-1059, gnl|monDom2|scaffold_1 (127133433-127133955) | |
| 383-1059, gnl|oryCun1|scaffold_173095 (57811-58332) | |
| 383-1059, gnl|panTro1|chr12 (10141308-10141809) | |
| 383-1059, gnl|rheMac2|chr13 (9500510-9501015) | |
| 383-1059, gnl|rn3|chr6 (41832223-41832753) | |
| 1069-1238, gnl|bosTau2|chr16 (28318326-28318166) | |
| 1069-1238, gnl|canFam2|chr7 (29784601-29784387) | |
| 1069-1238, gnl|danRer3|chr3 (43221243-43221046) | |
| 1069-1238, gnl|dasNov1|scaffold_1250 (76056-76326) | |
| 1069-1238, gnl|echTel1|scaffold_320562 (115931-115737) | |
| 1069-1238, gnl|hg17|chr1 (168839063-168839318) | |
| 1069-1238, gnl|Hg17|chr1 (168839368-168839184) | |
| 1069-1238, gnl|mm7|chr1 (162185237-162184982) | |
| 1069-1238, gnl|Mm7|chr1 (162184945-162185115) | |
| 1069-1238, gnl|monDom2|scaffold_16 (23241704-23241916) | |
| 1069-1238, gnl|oryCun1|scaffold_201478 (36426-36703) | |
| 1069-1238, gnl|panTro1|chr1 (151166807-151167069) | |
| 1069-1238, gnl|rheMac2|chr1 (201832504-201832738) | |
| 1069-1238, gnl|rn3|chr13 (77930991-77930752) | |
| 1260-1500, gnl|bosTau2|chr29 (29033645-29033405) | |
| 1260-1500, gnl|canFam2|chr5 (7644383-7644136) | |
| 1260-1500, gnl|dasNov1|scaffold_9948 (68540-68306) | |
| 1260-1500, gnl|echTel1|scaffold_52914 (424-190) | |
| 1260-1500, gnl|galGal2|chr24 (1600283-1600510) | |
| 1260-1500, gnl|hg17|chr11 (129602096-129602330) | |
| 1260-1500, gnl|Hg17|chr11 (129602118-129602358) | |
| 1260-1500, gnl|loxAfr1|scaffold_11434 (47217-46966) | |
| 1260-1500, gnl|mm7|chr9 (30975138-30974887) | |
| 1260-1500, gnl|Mm7|chr9 (30975116-30974856) | |
| 1260-1500, gnl|monDom2|scaffold_15 (19196468-19196714) | |
| 1260-1500, gnl|oryCun1|scaffold_208798 (73892-73639) | |
| 1260-1500, gnl|panTro1|chr9 (131730972-131731210) | |
| 1260-1500, gnl|rheMac2|chr14 (128287061-128287306) | |
| 1260-1500, gnl|rn3|chr8 (30908430-30908191) | |
| 1260-1500, gnl|xenTro1|scaffold_795 (455054-455297) |
| Expressed library(ies): 19 entry(ies) | More info |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
| sme (0.305437) | |
| mgp (0.230681) | |
| fcc (0.197785) | |
| sag (0.182715) | |
| sto (0.179824) | |
| sin (0.174948) | |
| rec (0.17307) | |
| cut (0.169924) | |
| cje (0.165235) | |
| cki (0.165235) | |
| cli (0.152812) | |
| fat (0.147427) | |
| liv (0.146284) | |
| nca (0.136874) | |
| kid (0.129735) | |
| thg (0.126791) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| ebs (0.118301) |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sme (0.305437) | |
| mgp (0.230681) | |
| fcc (0.197785) | |
| sag (0.182715) | |
| sto (0.179824) | |
| sin (0.174948) | |
| rec (0.17307) | |
| cut (0.169924) | |
| cje (0.165235) | |
| cki (0.165235) | |
| cli (0.152812) | |
| fat (0.147427) | |
| liv (0.146284) | |
| nca (0.136874) | |
| kid (0.129735) | |
| thg (0.126791) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| ebs (0.118301) |