Non-Coding RNA Search

Ss1.1-Pig4-TMW8054P17.3

Sequence:


               
               CGGGGCAGGTATGTTTATTCCTAAAACGAGGTGCCAATCAACATGCCACTGATGAAGAAG
GGAAGGACCCTTTGAGTATAGCTGTAGAAGCAGCCAACGCAGATATAGTGACCTTGTTAC
GTTTAGCAAGAATGAATGAAGAGATGCGGGAATCAGAAGGACTTTATGGACAGCCAGGTG
ATGAAACTTACCAGGACATTTTTCGTGATTTCTCCCAAATGGCGTCCAATAATCCAGAGA
AACTAAACCGTTTCCAGCAAGATTCACAGAAATTTTGAATTTTTTTAAGAAGGGGAAAAT
AGTAAATCTGGTTACTCCCTAAAGTATACATCTGAAAACTCACAGATTTTTACTGTTTCA
GTGTCTACTTAATTTTAGTAGATACTGAGTGGTTTGAAAAAAAGGTGCCCATTCATTGAT
ATTTTTATAAATCAAAACATAGAGCTCAAATAGTTGGGAGAGGAACCTACCTTAAGACTT
GGCTTATTTTTTTTTTTTAATATCTGTTTAAAGGTCTATTTTTTACAGATAAAAGTTGAA
TCTAGACTTAGCCCATCTCTAGGTTGCAAGATGGTAAGAGTTTAGATAGATCTCTTTTTG
CCAGTGGGTGATAGCATTGATTTTTTTGTTGTTGTTCTGAGCACTGTGCCCAGGGTCGTT
CCTTCAAGTACGTTTGCATCACATGGGAGCCTGATGTCCTATATGGCTGAAGAGTATGTC
TTTGCTATAGCTCCCTGATGTTGGTGGCTCAGAAATAGCTTTTTTGCTTTTTGGTAGCCT
AGCTATCATATACATATTATGTAATTTAACTGTTAGAGCTAGAGAATATGTGTCCCCTAC
TTGTTCGTAAATGCAGTACTCAGTTATTGTCCAGTGCTTTAACATACGTATAATGACTGT
ACAGATTGACATAACTCAGTTCTTTAGATTTATTCCATTTTATGAAGCAAAAAGAAGCCC
TTAACATTTTTTTTTTTTTTTTTAATTACCAGAAGACTCTCATAGAAGTTGTAGTTCTCT
ATTGTTGGGTTGATTCCTTAAAATCTTGACAAACTTATTGATGTAATAAAACTGTGTTTC
AAAGGTTACTTGAATGTTGCAAAATTATGCTTTCATCAGATTATAACCATCAAAGGAAAT
GTTGATTTATAAGATAATGTGGAACATTTTTATATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGGGCAGGTATGTTTATTCCTAAAACGAGGTGCCAATCAACATGCCACTGATGAAGAAG
GGAAGGACCCTTTGAGTATAGCTGTAGAAGCAGCCAACGCAGATATAGTGACCTTGTTAC
GTTTAGCAAGAATGAATGAAGAGATGCGGGAATCAGAAGGACTTTATGGACAGCCAGGTG
ATGAAACTTACCAGGACATTTTTCGTGATTTCTCCCAAATGGCGTCCAATAATCCAGAGA
AACTAAACCGTTTCCAGCAAGATTCACAGAAATTTTGAATTTTTTTAAGAAGGGGAAAAT
AGTAAATCTGGTTACTCCCTAAAGTATACATCTGAAAACTCACAGATTTTTACTGTTTCA
GTGTCTACTTAATTTTAGTAGATACTGAGTGGTTTGAAAAAAAGGTGCCCATTCATTGAT
ATTTTTATAAATCAAAACATAGAGCTCAAATAGTTGGGAGAGGAACCTACCTTAAGACTT
GGCTTATTTTTTTTTTTTAATATCTGTTTAAAGGTCTATTTTTTACAGATAAAAGTTGAA
TCTAGACTTAGCCCATCTCTAGGTTGCAAGATGGTAAGAGTTTAGATAGATCTCTTTTTG
CCAGTGGGTGATAGCATTGATTTTTTTGTTGTTGTTCTGAGCACTGTGCCCAGGGTCGTT
CCTTCAAGTACGTTTGCATCACATGGGAGCCTGATGTCCTATATGGCTGAAGAGTATGTC
TTTGCTATAGCTCCCTGATGTTGGTGGCTCAGAAATAGCTTTTTTGCTTTTTGGTAGCCT
AGCTATCATATACATATTATGTAATTTAACTGTTAGAGCTAGAGAATATGTGTCCCCTAC
TTGTTCGTAAATGCAGTACTCAGTTATTGTCCAGTGCTTTAACATACGTATAATGACTGT
ACAGATTGACATAACTCAGTTCTTTAGATTTATTCCATTTTATGAAGCAAAAAGAAGCCC
TTAACATTTTTTTTTTTTTTTTTAATTACCAGAAGACTCTCATAGAAGTTGTAGTTCTCT
ATTGTTGGGTTGATTCCTTAAAATCTTGACAAACTTATTGATGTAATAAAACTGTGTTTC
AAAGGTTACTTGAATGTTGCAAAATTATGCTTTCATCAGATTATAACCATCAAAGGAAAT
GTTGATTTATAAGATAATGTGGAACATTTTTATATT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|60359838|dbj|BAD90138.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|60359838|dbj|BAD90138.1|

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               4-117, gnl|bosTau2|chr1 (44335887-44335774)
               

               
               4-117, gnl|Hg17|chr3 (196491258-196491145)
               

               
               4-117, gnl|Mm7|chr16 (30777640-30777527)
               


               
               941-1176, gnl|bosTau2|chr10 (24251307-24251071)
               

               
               941-1176, gnl|Hg17|chr3 (196480680-196480458)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-117, gnl|bosTau2|chr1 (44335887-44335774)
               

               
               4-117, gnl|Hg17|chr3 (196491258-196491145)
               

               
               4-117, gnl|Mm7|chr16 (30777640-30777527)
               


               
               941-1176, gnl|bosTau2|chr10 (24251307-24251071)
               

               
               941-1176, gnl|Hg17|chr3 (196480680-196480458)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               nje (0.33184)
               

               
               kid (0.129735)
               

               
               ese (0.126502)
               

               
               cly (0.120642)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.33184)
               

               
               kid (0.129735)
               

               
               ese (0.126502)
               

               
               cly (0.120642)

	4-117, gnl\|bosTau2\|chr1 (44335887-44335774)
	4-117, gnl\|Hg17\|chr3 (196491258-196491145)
	4-117, gnl\|Mm7\|chr16 (30777640-30777527)

	941-1176, gnl\|bosTau2\|chr10 (24251307-24251071)
	941-1176, gnl\|Hg17\|chr3 (196480680-196480458)