Ss1.1-Pig4-TMW8054P23.5
|
ACTTCCCAGCCGGGTCACGACCCAGCGGGCAGGAGCCAGGATTCCGAGAGCTCGGTGTCC
TCAGCGGGTCAGCGAAGGCCCGGTTCAGAGCCATGTCCACGAATCTGCGCACCGCGCTCA
TTTTTGGTGGCTTCATCACCCTGATCGGCGCCGCCTTCTACCCCATCTACTTCCGGCCCC
TAATGCGGCTGGAGGAGTACCAGAAGGAACAGGCCATAAACCGGGCTGGTGTTGTTCAGG
AAGACGTGCAGCCACCAGGGTTAAAAGTGTGGTCGGATCCATTCGGCAGGAAGTGAGAGG
GCTGTCCCCCGCCTCTGATGAGGAAGGCAGACCGCGTCCCTCCGAGTCTTCAGGCTTTCA
ATTCTGCAGCAGGTGCCCCGAGGAACTCACGTGGCCAGCGAACGACAGTCGGAGAAGAAA
ACTCCTTAAGGCCCTAGAGAAGAGTGCTGGGCAGCAGCTTTAATTCCCTCCTTAATTGAA
CCCTGGGACAAATGGCACCATTAGGAAGGTCTGCGTGATTTTTGATTCGAAAAATGAAGC
TCTCAGCCAGCTGTGTGGGGAGGCTGTCTGCTGACTGTTCCGTCTCTACGTCTGGGCCAG
CCGAGCTGTGATAGGAATACAAGCAACCAGGAGGCTTTGGGAAGAGCCTCGTCTCTTTCA
TCATCTTCCCAGGGAAACGTTTCAGTGCAAAACCACCACGGCGAGCAGCCTCGTAGGGCT
CTTTGCACAGGTTCAAGTTGATACAACTCTTTGACAACAAGGCACACTGTACTCTTTCGA
AATAAACAGTTCGGCTCTACTCTGTCCTAGGGATGCATGTTGGAAAATGAATACATATGA
GGCCAGTCAAATTACATGGGTACGCATGCATAGTTGAAATCACTGTTGAATTAACAGACG
TGAAAATGTGTTATTAAAATGATTTCTTTTTACCTCACAATGGTATGGTTTTTAAAGTCC
TTTTTTATAAGCTCATCAAATTATACCAAGAAGTACTGTCTGACGAGATTATATTTGACT |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
ACTTCCCAGCCGGGTCACGACCCAGCGGGCAGGAGCCAGGATTCCGAGAGCTCGGTGTCC
TCAGCGGGTCAGCGAAGGCCCGGTTCAGAGCCATGTCCACGAATCTGCGCACCGCGCTCA
TTTTTGGTGGCTTCATCACCCTGATCGGCGCCGCCTTCTACCCCATCTACTTCCGGCCCC
TAATGCGGCTGGAGGAGTACCAGAAGGAACAGGCCATAAACCGGGCTGGTGTTGTTCAGG
AAGACGTGCAGCCACCAGGGTTAAAAGTGTGGTCGGATCCATTCGGCAGGAAGTGAGAGG
GCTGTCCCCCGCCTCTGATGAGGAAGGCAGACCGCGTCCCTCCGAGTCTTCAGGCTTTCA
ATTCTGCAGCAGGTGCCCCGAGGAACTCACGTGGCCAGCGAACGACAGTCGGAGAAGAAA
ACTCCTTAAGGCCCTAGAGAAGAGTGCTGGGCAGCAGCTTTAATTCCCTCCTTAATTGAA
CCCTGGGACAAATGGCACCATTAGGAAGGTCTGCGTGATTTTTGATTCGAAAAATGAAGC
TCTCAGCCAGCTGTGTGGGGAGGCTGTCTGCTGACTGTTCCGTCTCTACGTCTGGGCCAG
CCGAGCTGTGATAGGAATACAAGCAACCAGGAGGCTTTGGGAAGAGCCTCGTCTCTTTCA
TCATCTTCCCAGGGAAACGTTTCAGTGCAAAACCACCACGGCGAGCAGCCTCGTAGGGCT
CTTTGCACAGGTTCAAGTTGATACAACTCTTTGACAACAAGGCACACTGTACTCTTTCGA
AATAAACAGTTCGGCTCTACTCTGTCCTAGGGATGCATGTTGGAAAATGAATACATATGA
GGCCAGTCAAATTACATGGGTACGCATGCATAGTTGAAATCACTGTTGAATTAACAGACG
TGAAAATGTGTTATTAAAATGATTTCTTTTTACCTCACAATGGTATGGTTTTTAAAGTCC
TTTTTTATAAGCTCATCAAATTATACCAAGAAGTACTGTCTGACGAGATTATATTTGACT |
|
gi|13543706|gb|AAH06003.1| |
Protein identifier
|
gi|13543706|gb|AAH06003.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
2-200, gnl|bosTau2|chr6 (23219187-23219383) |
|
2-200, gnl|canFam2|chr3 (87316023-87315632) |
|
2-200, gnl|dasNov1|scaffold_7069 (47148-46839) |
|
2-200, gnl|echTel1|scaffold_277360 (1798-1427) |
|
2-200, gnl|hg17|chr4 (25591970-25592333) |
|
2-200, gnl|Hg17|chr4 (25592113-25592312) |
|
2-200, gnl|loxAfr1|scaffold_99341 (4711-4354) |
|
2-200, gnl|mm7|chr5 (52640337-52640685) |
|
2-200, gnl|Mm7|chr5 (52640462-52640664) |
|
2-200, gnl|monDom2|scaffold_10 (12227408-12226996) |
|
2-200, gnl|oryCun1|scaffold_208069 (25704-26065) |
|
2-200, gnl|panTro1|chr3 (26164983-26165346) |
|
2-200, gnl|rheMac2|chr5 (20696220-20696587) |
|
2-200, gnl|rn3|chr14 (62473422-62473052) |
| |
|
32-199, gnl|bosTau2|chr10 (45172100-45172265) |
|
32-199, gnl|Hg17|chr4 (25592144-25592311) |
| |
|
202-940, gnl|bosTau2|chr10 (45172392-45173120) |
|
202-940, gnl|Hg17|chr4 (25606204-25607706) |
|
202-940, gnl|Mm7|chr5 (52650450-52651850) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
2-200, gnl|bosTau2|chr6 (23219187-23219383) |
|
2-200, gnl|canFam2|chr3 (87316023-87315632) |
|
2-200, gnl|dasNov1|scaffold_7069 (47148-46839) |
|
2-200, gnl|echTel1|scaffold_277360 (1798-1427) |
|
2-200, gnl|hg17|chr4 (25591970-25592333) |
|
2-200, gnl|Hg17|chr4 (25592113-25592312) |
|
2-200, gnl|loxAfr1|scaffold_99341 (4711-4354) |
|
2-200, gnl|mm7|chr5 (52640337-52640685) |
|
2-200, gnl|Mm7|chr5 (52640462-52640664) |
|
2-200, gnl|monDom2|scaffold_10 (12227408-12226996) |
|
2-200, gnl|oryCun1|scaffold_208069 (25704-26065) |
|
2-200, gnl|panTro1|chr3 (26164983-26165346) |
|
2-200, gnl|rheMac2|chr5 (20696220-20696587) |
|
2-200, gnl|rn3|chr14 (62473422-62473052) |
| |
|
32-199, gnl|bosTau2|chr10 (45172100-45172265) |
|
32-199, gnl|Hg17|chr4 (25592144-25592311) |
| |
|
202-940, gnl|bosTau2|chr10 (45172392-45173120) |
|
202-940, gnl|Hg17|chr4 (25606204-25607706) |
|
202-940, gnl|Mm7|chr5 (52650450-52651850) |
|
che (0.817884) |
|
ste (0.540833) |
|
ldo (0.485013) |
|
hea (0.408998) |
|
fty (0.351679) |
|
sin (0.349895) |
|
duo (0.345602) |
|
nco (0.323468) |
|
tbr (0.308356) |
|
lun (0.300978) |
|
spl (0.286369) |
|
ssp (0.271039) |
|
eru (0.240096) |
|
nms (0.213858) |
|
mas (0.210305) |
|
col (0.195008) |
|
nlu (0.191681) |
|
cmu (0.186393) |
|
sto (0.179824) |
|
ill (0.175593) |
|
ton (0.1755) |
|
fbs (0.175346) |
|
rec (0.17307) |
|
fhi (0.169578) |
|
nje (0.16592) |
|
cje (0.165235) |
|
bfe (0.149858) |
|
ski (0.146735) |
|
lin (0.145603) |
|
cst (0.140036) |
|
pla (0.133672) |
|
sug (0.127291) |
|
eep (0.122564) |
|
spc (0.113366) |
|
che (0.817884) |
|
ste (0.540833) |
|
ldo (0.485013) |
|
hea (0.408998) |
|
fty (0.351679) |
|
sin (0.349895) |
|
duo (0.345602) |
|
nco (0.323468) |
|
tbr (0.308356) |
|
lun (0.300978) |
|
spl (0.286369) |
|
ssp (0.271039) |
|
eru (0.240096) |
|
nms (0.213858) |
|
mas (0.210305) |
|
col (0.195008) |
|
nlu (0.191681) |
|
cmu (0.186393) |
|
sto (0.179824) |
|
ill (0.175593) |
|
ton (0.1755) |
|
fbs (0.175346) |
|
rec (0.17307) |
|
fhi (0.169578) |
|
nje (0.16592) |
|
cje (0.165235) |
|
bfe (0.149858) |
|
ski (0.146735) |
|
lin (0.145603) |
|
cst (0.140036) |
|
pla (0.133672) |
|
sug (0.127291) |
|
eep (0.122564) |
|
spc (0.113366) |
