Ss1.1-Pig4-TMW8055A07.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGTGACAGAGTGGCATTTGCTTGTAAATTCCTGAGTGATAGTCAGTTAAATAGATATATC GAAAAGTTGACGAATGAAATGAAAGAGGCTGGAAATTTGGAAGGGATACTTCTTACAGGC CTCACTAAAGATGGAGTGGACTTAATGGAGAGTTATGTCGACAGAACTTGGAGATGTCCA GACAGCAAGTTACTGCATGTTACAGGGTTCTCCTTTAGATGTTCTTAAAGATGAAAGAGT TCAGTATTGGATTGAGAATTACAGAAATTTATTGGATGCCTGGAGGTTTTGGCACAAACG AGCTGAATTTGATATTCACAGGAGTAAGTTGGATCCCAGTTCTAAGCCTTTAGCACAGGT GTTTGTGAGTTGCAATTTTTGTGGGAAGTCTATCTCCTATAGCTGTTCAACTGTGCCCCA TCAGGGCAGAGGTTTTAGTCAGTATGGTGTCAGTGGATCACCAACAAAATCTAAAGTCAC AAGTTGCCCTGGATGTCGAAAACCCCTTCCTCGATGTGCACTTTGCCTCATTAATATGGG AACACCTGTTTCTAGTTGTCCTGGAGGATCCAAATCCGATGAAAAAGTAGACTTGAGCAA GGACAAAAAATTAGCTCAATTTAACAACTGGTTTACGTGGTGTCACAATTGCAGGCACGG TGGGCATGCTGGACATATGCTTAGTTGGTTCAGGGATCATGCTGAGTGTCCTGTCTCTGC CTGCACGTGTAAATGTATGCAGCTGGATACAACAGGGAATCTGGTACCTGCAGAGACTGT CCAGCCATAAAATGTTATCACCTAAAAAACCTTCAAGTGTGGAACTTTCTAATAGATGTC CTTCATAGCTCAGAAACATACCTCAGAACAAGTCACACATGACTTTCCTGTAATGGGAAA ATAAATCATTCTATCAAATCACAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGTGACAGAGTGGCATTTGCTTGTAAATTCCTGAGTGATAGTCAGTTAAATAGATATATC GAAAAGTTGACGAATGAAATGAAAGAGGCTGGAAATTTGGAAGGGATACTTCTTACAGGC CTCACTAAAGATGGAGTGGACTTAATGGAGAGTTATGTCGACAGAACTTGGAGATGTCCA GACAGCAAGTTACTGCATGTTACAGGGTTCTCCTTTAGATGTTCTTAAAGATGAAAGAGT TCAGTATTGGATTGAGAATTACAGAAATTTATTGGATGCCTGGAGGTTTTGGCACAAACG AGCTGAATTTGATATTCACAGGAGTAAGTTGGATCCCAGTTCTAAGCCTTTAGCACAGGT GTTTGTGAGTTGCAATTTTTGTGGGAAGTCTATCTCCTATAGCTGTTCAACTGTGCCCCA TCAGGGCAGAGGTTTTAGTCAGTATGGTGTCAGTGGATCACCAACAAAATCTAAAGTCAC AAGTTGCCCTGGATGTCGAAAACCCCTTCCTCGATGTGCACTTTGCCTCATTAATATGGG AACACCTGTTTCTAGTTGTCCTGGAGGATCCAAATCCGATGAAAAAGTAGACTTGAGCAA GGACAAAAAATTAGCTCAATTTAACAACTGGTTTACGTGGTGTCACAATTGCAGGCACGG TGGGCATGCTGGACATATGCTTAGTTGGTTCAGGGATCATGCTGAGTGTCCTGTCTCTGC CTGCACGTGTAAATGTATGCAGCTGGATACAACAGGGAATCTGGTACCTGCAGAGACTGT CCAGCCATAAAATGTTATCACCTAAAAAACCTTCAAGTGTGGAACTTTCTAATAGATGTC CTTCATAGCTCAGAAACATACCTCAGAACAAGTCACACATGACTTTCCTGTAATGGGAAA ATAAATCATTCTATCAAATCACAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 43-206, gnl|bosTau2|chr4 (3518815-3518653) | |
| 43-206, gnl|canFam2|chr14 (26141048-26141211) | |
| 43-206, gnl|danRer3|chr7 (8283561-8283724) | |
| 43-206, gnl|dasNov1|scaffold_6500 (7731-7568) | |
| 43-206, gnl|echTel1|scaffold_323025 (61123-60960) | |
| 43-206, gnl|fr1|chrUn (143133869-143134032) | |
| 43-206, gnl|galGal2|chr2 (24078480-24078641) | |
| 43-206, gnl|hg17|chr7 (7402274-7402437) | |
| 43-206, gnl|Hg17|chr7 (7402273-7402435) | |
| 43-206, gnl|loxAfr1|scaffold_8285 (77890-77727) | |
| 43-206, gnl|mm7|chr6 (8186231-8186394) | |
| 43-206, gnl|Mm7|chr6 (8186230-8186392) | |
| 43-206, gnl|monDom2|scaffold_236 (551339-551176) | |
| 43-206, gnl|oryCun1|scaffold_211077 (249345-249508) | |
| 43-206, gnl|panTro1|chr6 (7864214-7864377) | |
| 43-206, gnl|rheMac2|chr3 (118782039-118781876) | |
| 43-206, gnl|rn3|chr4 (33399633-33399796) | |
| 43-206, gnl|tetNig1|chrUn_random (31755648-31755485) | |
| 43-206, gnl|xenTro1|scaffold_420 (202464-202301) | |
| 357-564, gnl|bosTau2|chr4 (3512902-3512695) | |
| 357-564, gnl|canFam2|chr14 (26147910-26148152) | |
| 357-564, gnl|danRer3|chr7 (8288192-8288446) | |
| 357-564, gnl|dasNov1|scaffold_6500 (1964-1721) | |
| 357-564, gnl|echTel1|scaffold_323025 (57131-56888) | |
| 357-564, gnl|fr1|chrUn (143134432-143134643) | |
| 357-564, gnl|galGal2|chr2 (24080823-24081053) | |
| 357-564, gnl|hg17|chr7 (7409125-7409368) | |
| 357-564, gnl|Hg17|chr7 (7409126-7409333) | |
| 357-564, gnl|mm7|chr6 (8191311-8191548) | |
| 357-564, gnl|Mm7|chr6 (8191312-8191519) | |
| 357-564, gnl|monDom2|scaffold_236 (550057-549842) | |
| 357-564, gnl|oryCun1|scaffold_211077 (254634-254875) | |
| 357-564, gnl|panTro1|chr6 (7871054-7871297) | |
| 357-564, gnl|rheMac2|chr3 (118774827-118774585) | |
| 357-564, gnl|rn3|chr4 (33404668-33404905) | |
| 357-564, gnl|tetNig1|chrUn_random (31754141-31753930) | |
| 357-564, gnl|xenTro1|scaffold_420 (200633-200419) | |
| 686-921, gnl|bosTau2|chr4 (3504361-3504123) | |
| 686-921, gnl|Hg17|chr7 (7419858-7420097) | |
| 686-921, gnl|Mm7|chr6 (8193641-8193867) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 43-206, gnl|bosTau2|chr4 (3518815-3518653) | |
| 43-206, gnl|canFam2|chr14 (26141048-26141211) | |
| 43-206, gnl|danRer3|chr7 (8283561-8283724) | |
| 43-206, gnl|dasNov1|scaffold_6500 (7731-7568) | |
| 43-206, gnl|echTel1|scaffold_323025 (61123-60960) | |
| 43-206, gnl|fr1|chrUn (143133869-143134032) | |
| 43-206, gnl|galGal2|chr2 (24078480-24078641) | |
| 43-206, gnl|hg17|chr7 (7402274-7402437) | |
| 43-206, gnl|Hg17|chr7 (7402273-7402435) | |
| 43-206, gnl|loxAfr1|scaffold_8285 (77890-77727) | |
| 43-206, gnl|mm7|chr6 (8186231-8186394) | |
| 43-206, gnl|Mm7|chr6 (8186230-8186392) | |
| 43-206, gnl|monDom2|scaffold_236 (551339-551176) | |
| 43-206, gnl|oryCun1|scaffold_211077 (249345-249508) | |
| 43-206, gnl|panTro1|chr6 (7864214-7864377) | |
| 43-206, gnl|rheMac2|chr3 (118782039-118781876) | |
| 43-206, gnl|rn3|chr4 (33399633-33399796) | |
| 43-206, gnl|tetNig1|chrUn_random (31755648-31755485) | |
| 43-206, gnl|xenTro1|scaffold_420 (202464-202301) | |
| 357-564, gnl|bosTau2|chr4 (3512902-3512695) | |
| 357-564, gnl|canFam2|chr14 (26147910-26148152) | |
| 357-564, gnl|danRer3|chr7 (8288192-8288446) | |
| 357-564, gnl|dasNov1|scaffold_6500 (1964-1721) | |
| 357-564, gnl|echTel1|scaffold_323025 (57131-56888) | |
| 357-564, gnl|fr1|chrUn (143134432-143134643) | |
| 357-564, gnl|galGal2|chr2 (24080823-24081053) | |
| 357-564, gnl|hg17|chr7 (7409125-7409368) | |
| 357-564, gnl|Hg17|chr7 (7409126-7409333) | |
| 357-564, gnl|mm7|chr6 (8191311-8191548) | |
| 357-564, gnl|Mm7|chr6 (8191312-8191519) | |
| 357-564, gnl|monDom2|scaffold_236 (550057-549842) | |
| 357-564, gnl|oryCun1|scaffold_211077 (254634-254875) | |
| 357-564, gnl|panTro1|chr6 (7871054-7871297) | |
| 357-564, gnl|rheMac2|chr3 (118774827-118774585) | |
| 357-564, gnl|rn3|chr4 (33404668-33404905) | |
| 357-564, gnl|tetNig1|chrUn_random (31754141-31753930) | |
| 357-564, gnl|xenTro1|scaffold_420 (200633-200419) | |
| 686-921, gnl|bosTau2|chr4 (3504361-3504123) | |
| 686-921, gnl|Hg17|chr7 (7419858-7420097) | |
| 686-921, gnl|Mm7|chr6 (8193641-8193867) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| nlu (0.191681) | |
| duo (0.172801) | |
| hlv (0.139256) | |
| ova (0.129132) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nlu (0.191681) | |
| duo (0.172801) | |
| hlv (0.139256) | |
| ova (0.129132) |