Ss1.1-Pig4-TMW8055A20.5
|
AGGCTCCAGGGATGGGGAGATTTGGCTCCAGTGAGTCAGGCCCTGGTTGGGGCTTGGGCC
CTGGGATTGGGAAAAGGGGATGGGGCAGACTTTGTAAGCGTATGCTAGGTATCCGATAGT
CCTGTAGAATTTAGTGAAGAAACCTTATACAGTTTTTAATTTTTATATAAACTAACTCAG
ACCCAAGCTACAAGGTTGGAATTTTGGTTGTTGGTTTTTTTTTTTTTTTTTAAGTACCCC
GCCTGTATAATTGCATCAGAATTCCCTCCCCCACCCCCACCCCCGTGTTTGTATTTTGGG
TTGGTTTACACTTGCACATATTCAATTTTCAGTTTTTCCCCTTTACGGTCTTCTCCCCTC
ACCTCCAGGACCCTCCCCCTTTTTAAAAAATAAATCTCTGACAAGTGTGAATCCCGTGAA
GACTTTATTTTGTGTTGTGTGTATCCTGTACAGCAAGGTTGGTCCTTCGTAACAACGGAT
GAAATGATTCCCTTTTTTAAAGCGCCCTCTCTCCCTCCACCCCCAGCGCCCCTGTCCTTG
GCATGTTTTGTATCAGCGATCATTCTGAACTGTACATAATTTATGTTGCAAGAGGCAAAG
GGCAAGTTTTGGATTTTGCTTCTTCCAAGTTTGTTTTTAAACGACAAATAAAAAAAAGAA
CATTTTAAATAAAAAAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AGGCTCCAGGGATGGGGAGATTTGGCTCCAGTGAGTCAGGCCCTGGTTGGGGCTTGGGCC
CTGGGATTGGGAAAAGGGGATGGGGCAGACTTTGTAAGCGTATGCTAGGTATCCGATAGT
CCTGTAGAATTTAGTGAAGAAACCTTATACAGTTTTTAATTTTTATATAAACTAACTCAG
ACCCAAGCTACAAGGTTGGAATTTTGGTTGTTGGTTTTTTTTTTTTTTTTTAAGTACCCC
GCCTGTATAATTGCATCAGAATTCCCTCCCCCACCCCCACCCCCGTGTTTGTATTTTGGG
TTGGTTTACACTTGCACATATTCAATTTTCAGTTTTTCCCCTTTACGGTCTTCTCCCCTC
ACCTCCAGGACCCTCCCCCTTTTTAAAAAATAAATCTCTGACAAGTGTGAATCCCGTGAA
GACTTTATTTTGTGTTGTGTGTATCCTGTACAGCAAGGTTGGTCCTTCGTAACAACGGAT
GAAATGATTCCCTTTTTTAAAGCGCCCTCTCTCCCTCCACCCCCAGCGCCCCTGTCCTTG
GCATGTTTTGTATCAGCGATCATTCTGAACTGTACATAATTTATGTTGCAAGAGGCAAAG
GGCAAGTTTTGGATTTTGCTTCTTCCAAGTTTGTTTTTAAACGACAAATAAAAAAAAGAA
CATTTTAAATAAAAAAAAAAAAAAAAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
507-674, gnl|bosTau2|chr5 (22437580-22437747) |
|
507-674, gnl|canFam2|chr27 (8566213-8566033) |
|
507-674, gnl|echTel1|scaffold_315380 (80568-80393) |
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507-674, gnl|hg17|chr12 (47699011-47699191) |
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507-674, gnl|Hg17|chr12 (47699190-47699025) |
|
507-674, gnl|loxAfr1|scaffold_2320 (1236-1422) |
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507-674, gnl|mm7|chr15 (98816913-98817094) |
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507-674, gnl|Mm7|chr15 (98817093-98816927) |
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507-674, gnl|oryCun1|scaffold_97572 (3673-3492) |
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507-674, gnl|panTro1|chr10 (48872389-48872569) |
|
507-674, gnl|rheMac2|chr11 (46147254-46147435) |
|
507-674, gnl|rn3|chr7 (137676397-137676580) |
|
507-674, gnl|xenTro1|scaffold_133 (1578560-1578726) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
507-674, gnl|bosTau2|chr5 (22437580-22437747) |
|
507-674, gnl|canFam2|chr27 (8566213-8566033) |
|
507-674, gnl|echTel1|scaffold_315380 (80568-80393) |
|
507-674, gnl|hg17|chr12 (47699011-47699191) |
|
507-674, gnl|Hg17|chr12 (47699190-47699025) |
|
507-674, gnl|loxAfr1|scaffold_2320 (1236-1422) |
|
507-674, gnl|mm7|chr15 (98816913-98817094) |
|
507-674, gnl|Mm7|chr15 (98817093-98816927) |
|
507-674, gnl|oryCun1|scaffold_97572 (3673-3492) |
|
507-674, gnl|panTro1|chr10 (48872389-48872569) |
|
507-674, gnl|rheMac2|chr11 (46147254-46147435) |
|
507-674, gnl|rn3|chr7 (137676397-137676580) |
|
507-674, gnl|xenTro1|scaffold_133 (1578560-1578726) |
|
jej (0.197844) |
|
fbs (0.175346) |
|
eye (0.170503) |
|
csk (0.140746) |
|
sug (0.127291) |
|
thg (0.126791) |
|
ese (0.126502) |
|
jej (0.197844) |
|
fbs (0.175346) |
|
eye (0.170503) |
|
csk (0.140746) |
|
sug (0.127291) |
|
thg (0.126791) |
|
ese (0.126502) |
