Ss1.1-Pig4-TMW8055B01.5
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CTATTGGACTACTGAGGCTGGTTCACAATGAATTTTTCCGGAGGGCCAAATTCAAGTCTC
TGACAGTGGTCAGCACATTCGAGCTGGGAACTGAGGAGGGCAGTGTCCTACAGCTGACAG
AAGCCTCCCGCTGGAGTGAGAGCTTCCTGGAGGTGATTCAGTCCCGTCCCGTCCTCATCT
CCCTGTGGATCCTGATTGGCAGTGTCCTGGGAGGGCTGCTCCTGCTTGCTCTCCTTGTCT
TTTGCCTTTGGAAGCTTGGCTTCTTTGCCCGTAAGAAAATCCCTGAAGAAGAAAAAAGAG
AAGAGAAAGTGGAGCAATGAATGTAGAATAAAGCCTCAGAAAGTTCTCCCTGGCAGCTTC
TCTGAAAGGCTTGCATACGAGCAGAGGTTTGGGGGCTCAAATGGGACAAGAAGCCTCTGG
ACTATCTCTCCAGACCTGCAACCTGACTTGACTCTTGAGTTATGAGGATGCTGCTGGCAA
GAGATGAGGCCTTACCTCAGACAAGAAGGGCTGGCACTAAAACCAGGAACACTCCCACCC
TGTGCCTCCCTTCTCATGATCTGGGTTCCAGAGCCAACACTGGGGCCTTGGTGTAGAGCC
CTTTTTTTCCTTATAACCAGGAACCAAGAATTTTTCGCCTAGGCCCTGACTTCATTCAGA
TTCCTTCTACATCCTCCCTGACAATTTGGAAAGATTAAGGGTTATCGTCCTCTGTTTCCC
ACCTCTCATCCTCCTGCCTTCTCCCCACTCCACAGGAGAAAGCTGACGTTGGCTTGAACG
AAGTAAAGTCAACATCTGCTGCTTTCCTGTGGAGTCTGGTGATTCAGAGGGCCGGATGGG
GAGAGTCAACAGGAAAAAAGGAGGGAGGAGGCAAAGCCACAAGACACATTCTGTACAATT
CCAAGGGAACAGAGAAGCCTTTAGACAGGCAACTGCCATCCCCCTGAAACCTGAGACTTT
CGTGGTGCACTCGCCCGCCCTCAGGTGCTGGAGAAATGGAGCCACGCAAGGATTTTCCCA
ACTCTGCAGCCTTCCCTGGGAGCGAGGCCAGGGCTGGGTGCCCGATTCTCTGGAGCCAGG
GGCCCCCACGTGGCTAGAGCTGGAATAACAGAAAAAGACTGGCTACCCCAGGCAGTTCTC
TCCTCTCTCAAGCCTCACACACTCCTGAACCCTCCTTGGAGCTGCCTT
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Blue-coloured subsequences are predicted RNA structures by RNAz
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CTATTGGACTACTGAGGCTGGTTCACAATGAATTTTTCCGGAGGGCCAAATTCAAGTCTC
TGACAGTGGTCAGCACATTCGAGCTGGGAACTGAGGAGGGCAGTGTCCTACAGCTGACAG
AAGCCTCCCGCTGGAGTGAGAGCTTCCTGGAGGTGATTCAGTCCCGTCCCGTCCTCATCT
CCCTGTGGATCCTGATTGGCAGTGTCCTGGGAGGGCTGCTCCTGCTTGCTCTCCTTGTCT
TTTGCCTTTGGAAGCTTGGCTTCTTTGCCCGTAAGAAAATCCCTGAAGAAGAAAAAAGAG
AAGAGAAAGTGGAGCAATGAATGTAGAATAAAGCCTCAGAAAGTTCTCCCTGGCAGCTTC
TCTGAAAGGCTTGCATACGAGCAGAGGTTTGGGGGCTCAAATGGGACAAGAAGCCTCTGG
ACTATCTCTCCAGACCTGCAACCTGACTTGACTCTTGAGTTATGAGGATGCTGCTGGCAA
GAGATGAGGCCTTACCTCAGACAAGAAGGGCTGGCACTAAAACCAGGAACACTCCCACCC
TGTGCCTCCCTTCTCATGATCTGGGTTCCAGAGCCAACACTGGGGCCTTGGTGTAGAGCC
CTTTTTTTCCTTATAACCAGGAACCAAGAATTTTTCGCCTAGGCCCTGACTTCATTCAGA
TTCCTTCTACATCCTCCCTGACAATTTGGAAAGATTAAGGGTTATCGTCCTCTGTTTCCC
ACCTCTCATCCTCCTGCCTTCTCCCCACTCCACAGGAGAAAGCTGACGTTGGCTTGAACG
AAGTAAAGTCAACATCTGCTGCTTTCCTGTGGAGTCTGGTGATTCAGAGGGCCGGATGGG
GAGAGTCAACAGGAAAAAAGGAGGGAGGAGGCAAAGCCACAAGACACATTCTGTACAATT
CCAAGGGAACAGAGAAGCCTTTAGACAGGCAACTGCCATCCCCCTGAAACCTGAGACTTT
CGTGGTGCACTCGCCCGCCCTCAGGTGCTGGAGAAATGGAGCCACGCAAGGATTTTCCCA
ACTCTGCAGCCTTCCCTGGGAGCGAGGCCAGGGCTGGGTGCCCGATTCTCTGGAGCCAGG
GGCCCCCACGTGGCTAGAGCTGGAATAACAGAAAAAGACTGGCTACCCCAGGCAGTTCTC
TCCTCTCTCAAGCCTCACACACTCCTGAACCCTCCTTGGAGCTGCCTT
|
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391-620, - strand, RNAz p=0.875491 |
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398-510, - strand, RNAz p=0.511676 |
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550-648, - strand, RNAz p=0.595904 |
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659-868, - strand, RNAz p=0.993928 |
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720-832, - strand, RNAz p=0.959113 |
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1014-1129, - strand, RNAz p=0.988845 |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
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391-620, - strand, RNAz p=0.875491 |
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398-510, - strand, RNAz p=0.511676 |
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550-648, - strand, RNAz p=0.595904 |
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659-868, - strand, RNAz p=0.993928 |
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720-832, - strand, RNAz p=0.959113 |
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1014-1129, - strand, RNAz p=0.988845 |
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841-968, + strand, RNAmicro p=0.999999 |
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771-882, + strand, RNAmicro p=0.999982 |
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1076-1184, - strand, RNAmicro p=0.999943 |
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761-897, - strand, RNAmicro p=0.999906 |
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806-969, - strand, RNAmicro p=0.999773 |
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1034-1154, + strand, RNAmicro p=0.954626 |
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262-393, - strand, RNAmicro p=0.921019 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
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841-968, + strand, RNAmicro p=0.999999 |
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771-882, + strand, RNAmicro p=0.999982 |
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1076-1184, - strand, RNAmicro p=0.999943 |
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761-897, - strand, RNAmicro p=0.999906 |
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806-969, - strand, RNAmicro p=0.999773 |
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1034-1154, + strand, RNAmicro p=0.954626 |
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262-393, - strand, RNAmicro p=0.921019 |
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659-868, CJ025494 full-length enriched swine cDNA library, adult trachea Sus
(dbj|CJ025494.1|), blast E-value=0, identity=100% |
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732-868, DA570547 HEMBA1 Homo sapiens cDNA clone HEMBA1004971 5', mRNA
(dbj|DA570547.1|), blast E-value=0, identity=93.43% |
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718-868, 149176 MARC 4BOV Bos taurus cDNA 5', mRNA sequence (gb|BE666131.1|),
blast E-value=0, identity=95.36% |
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732-868, AGENCOURT_15165752 NIH_MGC_192 Homo sapiens cDNA clone
(gb|CF265130.1|), blast E-value=0, identity=93.43% |
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732-868, 968698 MARC 4BOV Bos taurus cDNA 3', mRNA sequence (gb|CK846221.1|),
blast E-value=0, identity=97.08% |
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762-868, sh1-bdl05_l0.s2 adult sheep fracture callus pool Ovis aries cDNA,
(gb|DY482434.1|), blast E-value=0, identity=99.07% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
659-868, CJ025494 full-length enriched swine cDNA library, adult trachea Sus
(dbj|CJ025494.1|), blast E-value=0, identity=100% |
|
732-868, DA570547 HEMBA1 Homo sapiens cDNA clone HEMBA1004971 5', mRNA
(dbj|DA570547.1|), blast E-value=0, identity=93.43% |
|
718-868, 149176 MARC 4BOV Bos taurus cDNA 5', mRNA sequence (gb|BE666131.1|),
blast E-value=0, identity=95.36% |
|
732-868, AGENCOURT_15165752 NIH_MGC_192 Homo sapiens cDNA clone
(gb|CF265130.1|), blast E-value=0, identity=93.43% |
|
732-868, 968698 MARC 4BOV Bos taurus cDNA 3', mRNA sequence (gb|CK846221.1|),
blast E-value=0, identity=97.08% |
|
762-868, sh1-bdl05_l0.s2 adult sheep fracture callus pool Ovis aries cDNA,
(gb|DY482434.1|), blast E-value=0, identity=99.07% |
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196-1129, gnl|bosTau2|chr3 (15456849-15457811) |
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196-1129, gnl|canFam2|chr17 (61778337-61777582) |
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196-1129, gnl|dasNov1|scaffold_4243 (105256-106009) |
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196-1129, gnl|echTel1|scaffold_298519 (1229-468) |
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196-1129, gnl|hg17|chr1 (143031188-143031946) |
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196-1129, gnl|Hg17|chr1 (143031201-143032144) |
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196-1129, gnl|loxAfr1|scaffold_25300 (11155-11917) |
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196-1129, gnl|mm7|chr3 (96536848-96537620) |
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196-1129, gnl|Mm7|chr3 (96536859-96537813) |
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196-1129, gnl|monDom2|scaffold_44 (2353658-2352909) |
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196-1129, gnl|oryCun1|scaffold_210558 (20192-20957) |
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196-1129, gnl|panTro1|chr1_random (17573105-17572347) |
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196-1129, gnl|rheMac2|chr1 (126100795-126100038) |
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196-1129, gnl|rn3|chr2 (191429101-191429833) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
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196-1129, gnl|bosTau2|chr3 (15456849-15457811) |
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196-1129, gnl|canFam2|chr17 (61778337-61777582) |
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196-1129, gnl|dasNov1|scaffold_4243 (105256-106009) |
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196-1129, gnl|echTel1|scaffold_298519 (1229-468) |
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196-1129, gnl|hg17|chr1 (143031188-143031946) |
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196-1129, gnl|Hg17|chr1 (143031201-143032144) |
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196-1129, gnl|loxAfr1|scaffold_25300 (11155-11917) |
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196-1129, gnl|mm7|chr3 (96536848-96537620) |
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196-1129, gnl|Mm7|chr3 (96536859-96537813) |
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196-1129, gnl|monDom2|scaffold_44 (2353658-2352909) |
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196-1129, gnl|oryCun1|scaffold_210558 (20192-20957) |
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196-1129, gnl|panTro1|chr1_random (17573105-17572347) |
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196-1129, gnl|rheMac2|chr1 (126100795-126100038) |
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196-1129, gnl|rn3|chr2 (191429101-191429833) |
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tes (0.207814) |
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thg (0.126791) |
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eep (0.122564) |
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tes (0.207814) |
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thg (0.126791) |
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eep (0.122564) |
