Non-Coding RNA Search

Ss1.1-Pig4-TMW8055B12.3

Sequence:


               
               GCGGTGAAGAAGTGGAATTCCGGCAGCATCTAGAAAGCAAGCAACATAAAAGCAAGGTGT
CTGAACAGCGGTACAGAAATGAGATGGAGAATCTGGGATATGTATAGTGATTGTCATATT
CAGATAGAACAGCTTGTCCTGCCTGTTGTTTGCCTTCTGTCAATATGCCCTGCTTTGTGG
TTCTTTTGGTATGAGTACATTCCTCTGCTTAATGTTAATACACGTAACCTGTAGCTGTAC
CACAAGGTGTCAAAACTGGGGAAGGAAGAGAACGTGCTTAAGTCATGATGCTTTTTCCGA
TCAGTTGTGTTGAGCTACTTAAAGCCTGTGACCTACCTACCCCATGAGAAATAACTTTTT
ATCTTGACCAAGTTCGAACCAACTAGTAGCCTGCCAATTAGAGCTTTAACTATTTAAAAA
TTTCATCTTCTTTTGCAATTTTAGTGTTATGTCCTGTTAAATAAGTAATTTTATTGAGTT
TTTGCTTCAGATCATAGTAAGAACAGGTCAGCAGAGATTTCAGTTTACCAAAGCTTTTTT
GGAATCACCACCTTTACTCAATGCAGTAGGGTATACTATATATATGATTAATGCAGTAGG
ATATACTATATATATATATATATATATACACTACATATACTATATATGTATAGTATACAC
ACACACACACACACACTATACTATATAAACTGCATTAGAGTCCTGCCCAGGACAGTTTTT
CTCTTTATCATGTTCTCCCATTATTGAAATGTAGGTTTTCTTGTATTCAGAAACTTCTAA
TATGCTTGTGTACTTCTAAACAGTGAAACTTCATTTATGGTTGTAAATTTCACGCATTTT
AGTTCACCTTCTTCCCTCCTCTTTTTTTTTTGCCCCCAGTTGGATTATCTTGTCTAATAA
GCTTTTTTCATGCCCCAACTTTTTTTAGCTTTTCCAAGCCCCACATTTGAATAACCAGTG
AGTTCAGGATAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGTGAAGAAGTGGAATTCCGGCAGCATCTAGAAAGCAAGCAACATAAAAGCAAGGTGT
CTGAACAGCGGTACAGAAATGAGATGGAGAATCTGGGATATGTATAGTGATTGTCATATT
CAGATAGAACAGCTTGTCCTGCCTGTTGTTTGCCTTCTGTCAATATGCCCTGCTTTGTGG
TTCTTTTGGTATGAGTACATTCCTCTGCTTAATGTTAATACACGTAACCTGTAGCTGTAC
CACAAGGTGTCAAAACTGGGGAAGGAAGAGAACGTGCTTAAGTCATGATGCTTTTTCCGA
TCAGTTGTGTTGAGCTACTTAAAGCCTGTGACCTACCTACCCCATGAGAAATAACTTTTT
ATCTTGACCAAGTTCGAACCAACTAGTAGCCTGCCAATTAGAGCTTTAACTATTTAAAAA
TTTCATCTTCTTTTGCAATTTTAGTGTTATGTCCTGTTAAATAAGTAATTTTATTGAGTT
TTTGCTTCAGATCATAGTAAGAACAGGTCAGCAGAGATTTCAGTTTACCAAAGCTTTTTT
GGAATCACCACCTTTACTCAATGCAGTAGGGTATACTATATATATGATTAATGCAGTAGG
ATATACTATATATATATATATATATATACACTACATATACTATATATGTATAGTATACAC
ACACACACACACACACTATACTATATAAACTGCATTAGAGTCCTGCCCAGGACAGTTTTT
CTCTTTATCATGTTCTCCCATTATTGAAATGTAGGTTTTCTTGTATTCAGAAACTTCTAA
TATGCTTGTGTACTTCTAAACAGTGAAACTTCATTTATGGTTGTAAATTTCACGCATTTT
AGTTCACCTTCTTCCCTCCTCTTTTTTTTTTGCCCCCAGTTGGATTATCTTGTCTAATAA
GCTTTTTTCATGCCCCAACTTTTTTTAGCTTTTCCAAGCCCCACATTTGAATAACCAGTG
AGTTCAGGATAG

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               3-602, gnl|bosTau2|chr1 (57035378-57034782)
               

               
               3-602, gnl|Hg17|chr3 (180225611-180224801)
               

               
               3-602, gnl|Mm7|chr3 (32150358-32149771)
               


               
               677-972, gnl|bosTau2|chr1 (57034806-57034508)
               

               
               677-972, gnl|Hg17|chr3 (180224824-180224529)
               

               
               677-972, gnl|Mm7|chr3 (32149796-32149497)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-602, gnl|bosTau2|chr1 (57035378-57034782)
               

               
               3-602, gnl|Hg17|chr3 (180225611-180224801)
               

               
               3-602, gnl|Mm7|chr3 (32150358-32149771)
               


               
               677-972, gnl|bosTau2|chr1 (57034806-57034508)
               

               
               677-972, gnl|Hg17|chr3 (180224824-180224529)
               

               
               677-972, gnl|Mm7|chr3 (32149796-32149497)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               liv (0.146284)
               

               
               tra (0.123092)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.146284)
               

               
               tra (0.123092)

	3-602, gnl\|bosTau2\|chr1 (57035378-57034782)
	3-602, gnl\|Hg17\|chr3 (180225611-180224801)
	3-602, gnl\|Mm7\|chr3 (32150358-32149771)

	677-972, gnl\|bosTau2\|chr1 (57034806-57034508)
	677-972, gnl\|Hg17\|chr3 (180224824-180224529)
	677-972, gnl\|Mm7\|chr3 (32149796-32149497)