Ss1.1-Pig4-TMW8055B14.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGGAGGCCAAGCTAGAGATCATGGAGTTTGTGAACTTCCTGAAAAACCCAAAGCAGTAT CAAGACCTGGGAGCAAAAATCCCCAAGGGTGCCATCCTCACTGGTCCTCCAGGCACTGGG AAAACACTGCTGGCCAAGGCCACCGCTGGAGAAGCCAATGTCCCTTTCATCACCGTCAGT GGCTCTGAGTTCTTGGAGATGTTTGTGGGCGTGGGCCCTGCTCGAGTCCGAGACTTATTT GCCCTTGCTCGGAAGAATGCCCCCTGCATCCTCTTCATTGACGAAATAGACGCTGTGGGA AGGAAGAGAGGAAGGGGCAATTTTGGGGGGCAGAGCGAACAGGAGAACACACTCAATCAA TTGCTTGTGGAAATGGACGGCTTTAACACAACGACGAACGTGGTCATTTTGGCGGGCACC AATCGGCCGGATATCCTGGACCCTGCGCTCTTGAGGCCCGGACGCTTCGACAGACAGATC TTCATTGGACCACCGGACATAAAAGGAAGAGCCTCTATCTTCAAAGTGCACCTCCGACCG CTGAAACTGGACAGTACCCTGGAAAAAGAGAAGCTGGCAAGAAAGCTTGCGTCCTTGACG CCAGGGTTCTCAGGGGCTGATGTTGCCAATGTTTGCAATGAAGCTGCTCTGATTGCCGCC AGACACCTTTCAGATTCCATCAATCAGAAACACTTTGAACAAGCGATTGAGCGAGTGATT GGAGGCCTAGAGAAGAAAACTCAGGTCCTGCAGCCCGAGGAGAAGAAGACAGTGGCGTAC CACGAGGCAGGCCACGCAGTTGCTGGCTGGTATCTGGAGCACGCAGACCCGCTCCTGAAG GTCTCCATCATCCCACGGGGCAAGGGCCTGGGCTACGCCCAGTACCTCCCCAAGGAGCAG TATCTATACACCAAAGAGCAGCTGCTGGACAGGATGTGCATGACCCTGGGTGGCCGTGTG GCCGAGGAAATCTTCTTTGGGAGAATTACAACTGGTGCCCAGGATGACTTGCGGAAAGTG ACTCAGAGCGCATATGCCCAGATTGTTCAGTTTGGCATGAACGAAAAGGTCGGGCAAATC TCCTTTGACCTCCCACGCCAGGGGGACATGGTGTTAGAGAAGCCTTACAGCGAAGCCACC GCCAGATTGATTGATGACGAGGTGCGGATACTTATCAACGATGCTTATAAAAGGACAGTT GCTCTGCTCACAGAGAAGAAAGCTGACGTGGAAAAGGTTGCTCTGCTGTTATTAGAAAAA GAAGTATTAGACAAGAATAACATGGTTGAACTTTTGGGCCCCAGACCATTTGCAGAAAAA TCTACATACGAAGAGTTTGTGGAAGGCACGGGCAGCCTGGATGAGGACACATCACTCCCA GAGGGCCTGAAGGACTGGAACAGGGAGCGGGAGGGCAGCGGGGAGGAACCCGCGGGCGAG AAGGTCGCCAGCCAGGTCCAGGGGGCCAGCCCCTCGTAGCTCGTGGATCACAGGATCCCA GCTCTGGCTTCTCTGAGGCGTGCTCTACGAGTCCCTCTCAGCCAGCTGCCGGCCCAGAGG ACAGCAGAGAGGAGGGCCTCAGCCAGCCCTGGGGTGGGGAGCACAGGTCCTACGCCCCTG CTGCTCCTCCTCCCTGGCGTGATGCAGCGCGTGGGGCATGGACTCTGGAGCTGCCAGCGT AAGGGGGGTGTTCTCCCGCCACCCCCTCTTCACTCCCACTGCCCTTCAGAGCTTCCCTCT GCGACAGCTGTGAAATTAAATTGGAGTCCTGATAAGAGTATTTTCATTTGATCTAATATT TTTTAAGATTGAATCCAGGCCACATGTTGCTATTTTGTGATGGAATGGTTTCTATAGAGA GCTGTAACATATTTAAAACTATGAATGTATTATGTAAATACGGCTTCTTTATGTCAAAAA TAAAGTGTCATCACTGCAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGGAGGCCAAGCTAGAGATCATGGAGTTTGTGAACTTCCTGAAAAACCCAAAGCAGTAT CAAGACCTGGGAGCAAAAATCCCCAAGGGTGCCATCCTCACTGGTCCTCCAGGCACTGGG AAAACACTGCTGGCCAAGGCCACCGCTGGAGAAGCCAATGTCCCTTTCATCACCGTCAGT GGCTCTGAGTTCTTGGAGATGTTTGTGGGCGTGGGCCCTGCTCGAGTCCGAGACTTATTT GCCCTTGCTCGGAAGAATGCCCCCTGCATCCTCTTCATTGACGAAATAGACGCTGTGGGA AGGAAGAGAGGAAGGGGCAATTTTGGGGGGCAGAGCGAACAGGAGAACACACTCAATCAA TTGCTTGTGGAAATGGACGGCTTTAACACAACGACGAACGTGGTCATTTTGGCGGGCACC AATCGGCCGGATATCCTGGACCCTGCGCTCTTGAGGCCCGGACGCTTCGACAGACAGATC TTCATTGGACCACCGGACATAAAAGGAAGAGCCTCTATCTTCAAAGTGCACCTCCGACCG CTGAAACTGGACAGTACCCTGGAAAAAGAGAAGCTGGCAAGAAAGCTTGCGTCCTTGACG CCAGGGTTCTCAGGGGCTGATGTTGCCAATGTTTGCAATGAAGCTGCTCTGATTGCCGCC AGACACCTTTCAGATTCCATCAATCAGAAACACTTTGAACAAGCGATTGAGCGAGTGATT GGAGGCCTAGAGAAGAAAACTCAGGTCCTGCAGCCCGAGGAGAAGAAGACAGTGGCGTAC CACGAGGCAGGCCACGCAGTTGCTGGCTGGTATCTGGAGCACGCAGACCCGCTCCTGAAG GTCTCCATCATCCCACGGGGCAAGGGCCTGGGCTACGCCCAGTACCTCCCCAAGGAGCAG TATCTATACACCAAAGAGCAGCTGCTGGACAGGATGTGCATGACCCTGGGTGGCCGTGTG GCCGAGGAAATCTTCTTTGGGAGAATTACAACTGGTGCCCAGGATGACTTGCGGAAAGTG ACTCAGAGCGCATATGCCCAGATTGTTCAGTTTGGCATGAACGAAAAGGTCGGGCAAATC TCCTTTGACCTCCCACGCCAGGGGGACATGGTGTTAGAGAAGCCTTACAGCGAAGCCACC GCCAGATTGATTGATGACGAGGTGCGGATACTTATCAACGATGCTTATAAAAGGACAGTT GCTCTGCTCACAGAGAAGAAAGCTGACGTGGAAAAGGTTGCTCTGCTGTTATTAGAAAAA GAAGTATTAGACAAGAATAACATGGTTGAACTTTTGGGCCCCAGACCATTTGCAGAAAAA TCTACATACGAAGAGTTTGTGGAAGGCACGGGCAGCCTGGATGAGGACACATCACTCCCA GAGGGCCTGAAGGACTGGAACAGGGAGCGGGAGGGCAGCGGGGAGGAACCCGCGGGCGAG AAGGTCGCCAGCCAGGTCCAGGGGGCCAGCCCCTCGTAGCTCGTGGATCACAGGATCCCA GCTCTGGCTTCTCTGAGGCGTGCTCTACGAGTCCCTCTCAGCCAGCTGCCGGCCCAGAGG ACAGCAGAGAGGAGGGCCTCAGCCAGCCCTGGGGTGGGGAGCACAGGTCCTACGCCCCTG CTGCTCCTCCTCCCTGGCGTGATGCAGCGCGTGGGGCATGGACTCTGGAGCTGCCAGCGT AAGGGGGGTGTTCTCCCGCCACCCCCTCTTCACTCCCACTGCCCTTCAGAGCTTCCCTCT GCGACAGCTGTGAAATTAAATTGGAGTCCTGATAAGAGTATTTTCATTTGATCTAATATT TTTTAAGATTGAATCCAGGCCACATGTTGCTATTTTGTGATGGAATGGTTTCTATAGAGA GCTGTAACATATTTAAAACTATGAATGTATTATGTAAATACGGCTTCTTTATGTCAAAAA TAAAGTGTCATCACTGCAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 503-620, - strand, RNAz p=0.70853 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 503-620, - strand, RNAz p=0.70853 |
| Aligned organism(s): 61 entry(ies) | More info |
| Aligned organism(s): 61 entry(ies) | Help | Less info |
| 86-248, gnl|bosTau2|chr18 (15983279-15983444) | |
| 86-248, gnl|canFam2|chr5 (66630892-66630738) | |
| 86-248, gnl|danRer3|chr2 (11023540-11023675) | |
| 86-248, gnl|dasNov1|scaffold_178870 (552-684) | |
| 86-248, gnl|echTel1|scaffold_288709 (34082-33929) | |
| 86-248, gnl|fr1|chrUn (36542313-36542445) | |
| 86-248, gnl|galGal2|chr2 (96441152-96441293) | |
| 86-248, gnl|hg17|chr16 (88584750-88584906) | |
| 86-248, gnl|Hg17|chr16 (88584773-88584955) | |
| 86-248, gnl|loxAfr1|scaffold_45528 (8617-8485) | |
| 86-248, gnl|mm7|chr8 (122133663-122133821) | |
| 86-248, gnl|Mm7|chr8 (122133688-122133867) | |
| 86-248, gnl|monDom2|scaffold_23 (5702832-5702676) | |
| 86-248, gnl|oryCun1|scaffold_204936 (32449-32295) | |
| 86-248, gnl|panTro1|chr17_random (5322414-5322545) | |
| 86-248, gnl|rheMac2|chr20 (88122396-88122552) | |
| 86-248, gnl|rn3|chr19 (53816664-53816820) | |
| 86-248, gnl|tetNig1|chrUn_random (26101725-26101880) | |
| 86-248, gnl|xenTro1|scaffold_13 (2952793-2952955) | |
| 487-620, gnl|bosTau2|chr24 (29210754-29210888) | |
| 487-620, gnl|canFam2|chr7 (80807667-80807796) | |
| 487-620, gnl|danRer3|chr2 (11026372-11026243) | |
| 487-620, gnl|dasNov1|scaffold_20510 (49370-49241) | |
| 487-620, gnl|echTel1|scaffold_266336 (543-672) | |
| 487-620, gnl|fr1|chrUn (36543074-36542946) | |
| 487-620, gnl|galGal2|chr2 (96446776-96446647) | |
| 487-620, gnl|hg17|chr18 (12341083-12341212) | |
| 487-620, gnl|Hg17|chr18 (12341210-12341077) | |
| 487-620, gnl|mm7|chr18 (67813280-67813409) | |
| 487-620, gnl|Mm7|chr18 (67813407-67813274) | |
| 487-620, gnl|monDom2|scaffold_21 (19568993-19568864) | |
| 487-620, gnl|oryCun1|scaffold_173248 (888-759) | |
| 487-620, gnl|panTro1|chr17_random (5328180-5328051) | |
| 487-620, gnl|rheMac2|chr18 (2356650-2356521) | |
| 487-620, gnl|rn3|chr18 (64019087-64019216) | |
| 487-620, gnl|tetNig1|chrUn_random (87107920-87107791) | |
| 487-620, gnl|xenTro1|scaffold_202 (1572905-1572776) | |
| 715-843, gnl|bosTau2|chr18 (15988259-15988388) | |
| 715-843, gnl|canFam2|chr5 (66622524-66622390) | |
| 715-843, gnl|danRer3|chr2 (11027755-11027883) | |
| 715-843, gnl|dasNov1|scaffold_164249 (3704-3824) | |
| 715-843, gnl|echTel1|scaffold_237537 (3368-3232) | |
| 715-843, gnl|fr1|chrUn (36543516-36543653) | |
| 715-843, gnl|hg17|chr16 (88593090-88593227) | |
| 715-843, gnl|Hg17|chr16 (88593094-88593223) | |
| 715-843, gnl|loxAfr1|scaffold_28429 (34193-34069) | |
| 715-843, gnl|mm7|chr8 (122140422-122140559) | |
| 715-843, gnl|Mm7|chr8 (122140426-122140555) | |
| 715-843, gnl|monDom2|scaffold_23 (5693207-5693084) | |
| 715-843, gnl|oryCun1|scaffold_155959 (2109-2246) | |
| 715-843, gnl|panTro1|chr18 (83631961-83632098) | |
| 715-843, gnl|rheMac2|chr20 (88131508-88131645) | |
| 715-843, gnl|rn3|chr19 (53824216-53824353) | |
| 715-843, gnl|tetNig1|chrUn_random (26102884-26103016) | |
| 715-843, gnl|xenTro1|scaffold_13 (2955699-2955837) | |
| 900-1408, gnl|bosTau2|chr12 (1451619-1451112) | |
| 900-1408, gnl|Hg17|chr16 (88593792-88594528) | |
| 900-1408, gnl|Mm7|chr8 (122141737-122142464) | |
| 1684-1937, gnl|bosTau2|chr21 (27168748-27168988) | |
| 1684-1937, gnl|Hg17|chr18 (12319266-12318958) | |
| 1684-1937, gnl|Mm7|chr18 (67797323-67797077) |
| Aligned organism(s): 61 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 86-248, gnl|bosTau2|chr18 (15983279-15983444) | |
| 86-248, gnl|canFam2|chr5 (66630892-66630738) | |
| 86-248, gnl|danRer3|chr2 (11023540-11023675) | |
| 86-248, gnl|dasNov1|scaffold_178870 (552-684) | |
| 86-248, gnl|echTel1|scaffold_288709 (34082-33929) | |
| 86-248, gnl|fr1|chrUn (36542313-36542445) | |
| 86-248, gnl|galGal2|chr2 (96441152-96441293) | |
| 86-248, gnl|hg17|chr16 (88584750-88584906) | |
| 86-248, gnl|Hg17|chr16 (88584773-88584955) | |
| 86-248, gnl|loxAfr1|scaffold_45528 (8617-8485) | |
| 86-248, gnl|mm7|chr8 (122133663-122133821) | |
| 86-248, gnl|Mm7|chr8 (122133688-122133867) | |
| 86-248, gnl|monDom2|scaffold_23 (5702832-5702676) | |
| 86-248, gnl|oryCun1|scaffold_204936 (32449-32295) | |
| 86-248, gnl|panTro1|chr17_random (5322414-5322545) | |
| 86-248, gnl|rheMac2|chr20 (88122396-88122552) | |
| 86-248, gnl|rn3|chr19 (53816664-53816820) | |
| 86-248, gnl|tetNig1|chrUn_random (26101725-26101880) | |
| 86-248, gnl|xenTro1|scaffold_13 (2952793-2952955) | |
| 487-620, gnl|bosTau2|chr24 (29210754-29210888) | |
| 487-620, gnl|canFam2|chr7 (80807667-80807796) | |
| 487-620, gnl|danRer3|chr2 (11026372-11026243) | |
| 487-620, gnl|dasNov1|scaffold_20510 (49370-49241) | |
| 487-620, gnl|echTel1|scaffold_266336 (543-672) | |
| 487-620, gnl|fr1|chrUn (36543074-36542946) | |
| 487-620, gnl|galGal2|chr2 (96446776-96446647) | |
| 487-620, gnl|hg17|chr18 (12341083-12341212) | |
| 487-620, gnl|Hg17|chr18 (12341210-12341077) | |
| 487-620, gnl|mm7|chr18 (67813280-67813409) | |
| 487-620, gnl|Mm7|chr18 (67813407-67813274) | |
| 487-620, gnl|monDom2|scaffold_21 (19568993-19568864) | |
| 487-620, gnl|oryCun1|scaffold_173248 (888-759) | |
| 487-620, gnl|panTro1|chr17_random (5328180-5328051) | |
| 487-620, gnl|rheMac2|chr18 (2356650-2356521) | |
| 487-620, gnl|rn3|chr18 (64019087-64019216) | |
| 487-620, gnl|tetNig1|chrUn_random (87107920-87107791) | |
| 487-620, gnl|xenTro1|scaffold_202 (1572905-1572776) | |
| 715-843, gnl|bosTau2|chr18 (15988259-15988388) | |
| 715-843, gnl|canFam2|chr5 (66622524-66622390) | |
| 715-843, gnl|danRer3|chr2 (11027755-11027883) | |
| 715-843, gnl|dasNov1|scaffold_164249 (3704-3824) | |
| 715-843, gnl|echTel1|scaffold_237537 (3368-3232) | |
| 715-843, gnl|fr1|chrUn (36543516-36543653) | |
| 715-843, gnl|hg17|chr16 (88593090-88593227) | |
| 715-843, gnl|Hg17|chr16 (88593094-88593223) | |
| 715-843, gnl|loxAfr1|scaffold_28429 (34193-34069) | |
| 715-843, gnl|mm7|chr8 (122140422-122140559) | |
| 715-843, gnl|Mm7|chr8 (122140426-122140555) | |
| 715-843, gnl|monDom2|scaffold_23 (5693207-5693084) | |
| 715-843, gnl|oryCun1|scaffold_155959 (2109-2246) | |
| 715-843, gnl|panTro1|chr18 (83631961-83632098) | |
| 715-843, gnl|rheMac2|chr20 (88131508-88131645) | |
| 715-843, gnl|rn3|chr19 (53824216-53824353) | |
| 715-843, gnl|tetNig1|chrUn_random (26102884-26103016) | |
| 715-843, gnl|xenTro1|scaffold_13 (2955699-2955837) | |
| 900-1408, gnl|bosTau2|chr12 (1451619-1451112) | |
| 900-1408, gnl|Hg17|chr16 (88593792-88594528) | |
| 900-1408, gnl|Mm7|chr8 (122141737-122142464) | |
| 1684-1937, gnl|bosTau2|chr21 (27168748-27168988) | |
| 1684-1937, gnl|Hg17|chr18 (12319266-12318958) | |
| 1684-1937, gnl|Mm7|chr18 (67797323-67797077) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| fbs (0.175346) | |
| eye (0.170503) | |
| nco (0.161734) | |
| cag (0.151194) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| pgl (0.118483) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fbs (0.175346) | |
| eye (0.170503) | |
| nco (0.161734) | |
| cag (0.151194) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| pgl (0.118483) |