Non-Coding RNA Search

Ss1.1-Pig4-TMW8055B18.5

Sequence:


               
               CGCAAGATGTCGCTGGCACGTGTTTTTGCGGAGAGGACCTTGCAAATGACGGGATGACTG
TGAACTCCTCTTCTCTGGTGAGGGGCTGAGGACAGTGACTCTTTTCTCACCATGAGTGTC
ACCCCAGAGGTCAAGAGTCGTGGGATGAAGTTTGCTGAGGAGCAGCTGCTAAAGCATGGA
TGGACTCAAGGCAAAGGCCTGGGCCGGAAGGAGAACGGTATCACCCAGGCCCTCAGGGTG
ACACTGAAGCAGGACACTCATGGGGTGGGACACGACCCTGCCAAGGAGTTCACAAACCAC
TGGTGGAATGAGCTCTTCAACAAGACAGCAGCCAGCTTGGTAGTGGAAACAGGACGGGAT
GGAGTCCAGATCAGGCACCTGGCTAAGGAGACCACCCGTCATAATCAGCCCAAGCCCAAC
CTGCTGTATCAAAAGTTTGTGAAGACGGCCACACTGACTTCAAGTGGGGAGAAGCCAGAC
AAGGATTTGGAAAGCTGTGGTGATGACAACAGCCAGGAGCCCAAGCCTCCAAAGATTCTG
ACCGATGAGATGCTGCTCCAAGCCTGTGAGGGGCGAACAGCACACAAGGCTGCCCGTCAT
GGGATCACCATGAAGGCTAAGCTGGCTCGGTTGGAGGCTCAGGAGCAGGCCTTCCTGGCT
CGTCTCAAAGGCCAGGACCCTGGGACCCCTCAGCTGCAGTCTGAGAGCAAGCCCCCCAAA
GCCTTCCTGGCTCGTCTCAAAGGCCAGGACCCTGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCAAGATGTCGCTGGCACGTGTTTTTGCGGAGAGGACCTTGCAAATGACGGGATGACTG
TGAACTCCTCTTCTCTGGTGAGGGGCTGAGGACAGTGACTCTTTTCTCACCATGAGTGTC
ACCCCAGAGGTCAAGAGTCGTGGGATGAAGTTTGCTGAGGAGCAGCTGCTAAAGCATGGA
TGGACTCAAGGCAAAGGCCTGGGCCGGAAGGAGAACGGTATCACCCAGGCCCTCAGGGTG
ACACTGAAGCAGGACACTCATGGGGTGGGACACGACCCTGCCAAGGAGTTCACAAACCAC
TGGTGGAATGAGCTCTTCAACAAGACAGCAGCCAGCTTGGTAGTGGAAACAGGACGGGAT
GGAGTCCAGATCAGGCACCTGGCTAAGGAGACCACCCGTCATAATCAGCCCAAGCCCAAC
CTGCTGTATCAAAAGTTTGTGAAGACGGCCACACTGACTTCAAGTGGGGAGAAGCCAGAC
AAGGATTTGGAAAGCTGTGGTGATGACAACAGCCAGGAGCCCAAGCCTCCAAAGATTCTG
ACCGATGAGATGCTGCTCCAAGCCTGTGAGGGGCGAACAGCACACAAGGCTGCCCGTCAT
GGGATCACCATGAAGGCTAAGCTGGCTCGGTTGGAGGCTCAGGAGCAGGCCTTCCTGGCT
CGTCTCAAAGGCCAGGACCCTGGGACCCCTCAGCTGCAGTCTGAGAGCAAGCCCCCCAAA
GCCTTCCTGGCTCGTCTCAAAGGCCAGGACCCTGGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|7020216|dbj|BAA91036.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|7020216|dbj|BAA91036.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               51-203, + strand, RNAz p=0.987093
               

               
               606-720, - strand, RNAz p=0.923921

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               51-203, + strand, RNAz p=0.987093
               

               
               606-720, - strand, RNAz p=0.923921

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AK125763, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AK125763, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               51-203, gnl|bosTau2|chr3 (10919422-10919271)
               

               
               51-203, gnl|Hg17|chr1 (153381971-153381819)
               

               
               51-203, gnl|Mm7|chr3 (88164960-88165095)
               


               
               585-720, gnl|bosTau2|chr3 (10915815-10915680)
               

               
               585-720, gnl|Hg17|chr1 (153378717-153378582)
               

               
               585-720, gnl|Mm7|chr3 (88168756-88168894)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               51-203, gnl|bosTau2|chr3 (10919422-10919271)
               

               
               51-203, gnl|Hg17|chr1 (153381971-153381819)
               

               
               51-203, gnl|Mm7|chr3 (88164960-88165095)
               


               
               585-720, gnl|bosTau2|chr3 (10915815-10915680)
               

               
               585-720, gnl|Hg17|chr1 (153378717-153378582)
               

               
               585-720, gnl|Mm7|chr3 (88168756-88168894)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fhi (0.169578)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.169578)

	51-203, + strand, RNAz p=0.987093
	606-720, - strand, RNAz p=0.923921

	51-203, gnl\|bosTau2\|chr3 (10919422-10919271)
	51-203, gnl\|Hg17\|chr1 (153381971-153381819)
	51-203, gnl\|Mm7\|chr3 (88164960-88165095)

	585-720, gnl\|bosTau2\|chr3 (10915815-10915680)
	585-720, gnl\|Hg17\|chr1 (153378717-153378582)
	585-720, gnl\|Mm7\|chr3 (88168756-88168894)