Non-Coding RNA Search

Ss1.1-Pig4-TMW8055B20.3

Sequence:


               
               CAGATTGGTGTTTGAAAATCTGCCATTTCAGGGTAATATTTTTGTATGTCATTGACTTTT
TTAATTAAACGGTGTTTTTGCTACTGTTGGCTTAGGCAGTTTATGCTGTATTTTTGCATA
TCTTTATATTTTACAAAACTCTACTCCCTCTAAAGGAGTGTTGTGTTCATCTTTAGAAAT
CTATTTATGTAAAAACAATTTAAGGGAATAGTTTCAAATCATTTCTTTTAGTTGAATAGA
TGTGTATAAGGTAGTGTTAGCCAGTAAATTCTACTGAGATTGATACAGTCTCCTTAGTAA
CTGTCCTATAATGGAACAGTAGTAAATTCACTAAACTTTTGTCTTCAGAGTTGGATTGTT
CTCAGTACCTTAAACATGGGGAAATCTAACAGCGTGTATGTTTGGGGTTTTAATTATACA
TTTTATATATGAGCCATTTAGAATATGCAGTGTTGATTCTACACTGTAACCTGAAGTGTA
TATAACTGGGCTTATGTTAACGTGATCATGAAGTTGGTTTGCTCTAGCATGCTGCAGGCC
TACGGTCTTTAAACATGGTTTTGGTGAAGCTGTGTATGCAAGCAGTTTCTTCATGCTTTT
CTCTGGGCATCAGAAAATGAGGTGCCAGCATATTCTATACTAAATTCACCAGTGAAGCTT
TGGGGAGGGGGGGGGGCTTGCATTCTTTTCCTTGGTAATGAAAAAGAGTTGTTACCAACA
CAGTGCTGCAGTCTCTGGATATCAGCTATAATTTGTTTTTAATTTTGTTTTTGATGTTTA
TTGGACAAGTTTTATAATGAAGTTTTAAGTTGAAAATAAAAAGATGTTGCTTTGATCTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGATTGGTGTTTGAAAATCTGCCATTTCAGGGTAATATTTTTGTATGTCATTGACTTTT
TTAATTAAACGGTGTTTTTGCTACTGTTGGCTTAGGCAGTTTATGCTGTATTTTTGCATA
TCTTTATATTTTACAAAACTCTACTCCCTCTAAAGGAGTGTTGTGTTCATCTTTAGAAAT
CTATTTATGTAAAAACAATTTAAGGGAATAGTTTCAAATCATTTCTTTTAGTTGAATAGA
TGTGTATAAGGTAGTGTTAGCCAGTAAATTCTACTGAGATTGATACAGTCTCCTTAGTAA
CTGTCCTATAATGGAACAGTAGTAAATTCACTAAACTTTTGTCTTCAGAGTTGGATTGTT
CTCAGTACCTTAAACATGGGGAAATCTAACAGCGTGTATGTTTGGGGTTTTAATTATACA
TTTTATATATGAGCCATTTAGAATATGCAGTGTTGATTCTACACTGTAACCTGAAGTGTA
TATAACTGGGCTTATGTTAACGTGATCATGAAGTTGGTTTGCTCTAGCATGCTGCAGGCC
TACGGTCTTTAAACATGGTTTTGGTGAAGCTGTGTATGCAAGCAGTTTCTTCATGCTTTT
CTCTGGGCATCAGAAAATGAGGTGCCAGCATATTCTATACTAAATTCACCAGTGAAGCTT
TGGGGAGGGGGGGGGGCTTGCATTCTTTTCCTTGGTAATGAAAAAGAGTTGTTACCAACA
CAGTGCTGCAGTCTCTGGATATCAGCTATAATTTGTTTTTAATTTTGTTTTTGATGTTTA
TTGGACAAGTTTTATAATGAAGTTTTAAGTTGAAAATAAAAAGATGTTGCTTTGATCTAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-573, gnl|bosTau2|chr16 (16893396-16893976)
               

               
               1-573, gnl|Hg17|chr1 (221896773-221896230)
               

               
               1-573, gnl|Mm7|chr1 (181800047-181799559)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-573, gnl|bosTau2|chr16 (16893396-16893976)
               

               
               1-573, gnl|Hg17|chr1 (221896773-221896230)
               

               
               1-573, gnl|Mm7|chr1 (181800047-181799559)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

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               fty (0.351679)
               

               
               nbm (0.198649)
               

               
               ill (0.175593)
               

               
               rec (0.17307)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               eru (0.120048)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.351679)
               

               
               nbm (0.198649)
               

               
               ill (0.175593)
               

               
               rec (0.17307)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               eru (0.120048)

	1-573, gnl\|bosTau2\|chr16 (16893396-16893976)
	1-573, gnl\|Hg17\|chr1 (221896773-221896230)
	1-573, gnl\|Mm7\|chr1 (181800047-181799559)

	fty (0.351679)
	nbm (0.198649)
	ill (0.175593)
	rec (0.17307)
	lin (0.145603)
	spl (0.143184)
	eru (0.120048)