Non-Coding RNA Search

Ss1.1-Pig4-TMW8055C05.3

Sequence:


               
               TTTATTAAAAAAAGCTATATTATTTTCTAAAGAAACAGTCATATTTTTATACAGAATTAA
GTTTTCAGGTAACAAAGAAATAGACTTAGGGTACAGCAGAACCTGCAGTGTCCCTGTGGA
TGGGGGTCAGTATTATAAACACATGGAGAACGAGGACGAGCTCCACCTGTGCTGCCCCTC
TTGTGTCCCCTGTGGATGTGACAGGGCAGCGTATGCACGCAAGCCTGGTCAAATTGGCTT
AACTTGACACTTTAAAAAAGAAAAGAGTTGTATAGAGTTCTATAGTCAGGAAATTACTTT
GTTTTTATCAGATGCTTTAAAAGAACCAAAGTTTCAGTTGTTAGAATGTATCAGAGTATC
TCCATCTTTGTATACAAGGATGAAAGTTTGAACAGATCATCTAATGACTGTTTTACTGAT
AAGTCATTAAATCATCCACCATCCTTTCTTGATGCTTAAGAAACAAATCCTGATGCAGTT
TGACTCTAAAGATCCCAGATCATAATGTGGTGCATTTCTTTAGCTCTTCGTGTTTCCTGT
GTAAACATCAAGAAAAAACATATTTAAGTACGTAGTGCTTTATTTGCTCTCTATTTCAAA
TAGAACCAGGTCTTTGGGGTCTTGCCAGCATTTGGTGGTTTTGCACACCCTCTTTCTAAT
TGGATTTATTAGTAGTCTGGTGGGTTTTCAAAAATGAACATCTAAGGACATCTTTGCTTT
TTGATCCACTGTTTGTGGGAGAATTATATATATGTATATGAAAATCTGTTTTGAATATCT
ACATTTTGTATTTGGAAATTGTTTTAAAAATAAAAAAGGAAAAGTATAAAGCTGTTATTT
ATTCTGCATTTGTTGATATCCATCGCTAGTCAGTATACCACTTTGGTATATATTGCCTTT
ACACATCTACATTTGTATTTGCAACAGTGAACTTTATATCTACATAAACTGTAAATAATC
CTTTCTGTGAAAGGATCATCATATCAAGATGATACCAAAAGTGTGTAAAAAAAAAACTGC
ATTATTTTGTAATTATTCTTATAGATTAGCGATCAATAAAGTTACTTTTTATTTGTCAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTATTAAAAAAAGCTATATTATTTTCTAAAGAAACAGTCATATTTTTATACAGAATTAA
GTTTTCAGGTAACAAAGAAATAGACTTAGGGTACAGCAGAACCTGCAGTGTCCCTGTGGA
TGGGGGTCAGTATTATAAACACATGGAGAACGAGGACGAGCTCCACCTGTGCTGCCCCTC
TTGTGTCCCCTGTGGATGTGACAGGGCAGCGTATGCACGCAAGCCTGGTCAAATTGGCTT
AACTTGACACTTTAAAAAAGAAAAGAGTTGTATAGAGTTCTATAGTCAGGAAATTACTTT
GTTTTTATCAGATGCTTTAAAAGAACCAAAGTTTCAGTTGTTAGAATGTATCAGAGTATC
TCCATCTTTGTATACAAGGATGAAAGTTTGAACAGATCATCTAATGACTGTTTTACTGAT
AAGTCATTAAATCATCCACCATCCTTTCTTGATGCTTAAGAAACAAATCCTGATGCAGTT
TGACTCTAAAGATCCCAGATCATAATGTGGTGCATTTCTTTAGCTCTTCGTGTTTCCTGT
GTAAACATCAAGAAAAAACATATTTAAGTACGTAGTGCTTTATTTGCTCTCTATTTCAAA
TAGAACCAGGTCTTTGGGGTCTTGCCAGCATTTGGTGGTTTTGCACACCCTCTTTCTAAT
TGGATTTATTAGTAGTCTGGTGGGTTTTCAAAAATGAACATCTAAGGACATCTTTGCTTT
TTGATCCACTGTTTGTGGGAGAATTATATATATGTATATGAAAATCTGTTTTGAATATCT
ACATTTTGTATTTGGAAATTGTTTTAAAAATAAAAAAGGAAAAGTATAAAGCTGTTATTT
ATTCTGCATTTGTTGATATCCATCGCTAGTCAGTATACCACTTTGGTATATATTGCCTTT
ACACATCTACATTTGTATTTGCAACAGTGAACTTTATATCTACATAAACTGTAAATAATC
CTTTCTGTGAAAGGATCATCATATCAAGATGATACCAAAAGTGTGTAAAAAAAAAACTGC
ATTATTTTGTAATTATTCTTATAGATTAGCGATCAATAAAGTTACTTTTTATTTGTCAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               343-497, - strand, RNAz p=0.726973
               

               
               872-1018, - strand, RNAz p=0.910161

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               343-497, - strand, RNAz p=0.726973
               

               
               872-1018, - strand, RNAz p=0.910161

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1043, gnl|bosTau2|chr10 (29859080-29858026)
               

               
               1-1043, gnl|Hg17|chr14 (51266055-51267143)
               

               
               1-1043, gnl|Mm7|chr12 (68844981-68846021)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1043, gnl|bosTau2|chr10 (29859080-29858026)
               

               
               1-1043, gnl|Hg17|chr14 (51266055-51267143)
               

               
               1-1043, gnl|Mm7|chr12 (68844981-68846021)

Expressed library(ies): 16 entry(ies)

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Expressed library(ies): 16 entry(ies)

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               fat (0.58971)
               

               
               mga (0.480615)
               

               
               liv (0.292569)
               

               
               ret (0.257467)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               ski (0.146735)
               

               
               nca (0.136874)
               

               
               ste (0.135208)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fat (0.58971)
               

               
               mga (0.480615)
               

               
               liv (0.292569)
               

               
               ret (0.257467)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               ski (0.146735)
               

               
               nca (0.136874)
               

               
               ste (0.135208)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)

	343-497, - strand, RNAz p=0.726973
	872-1018, - strand, RNAz p=0.910161

	1-1043, gnl\|bosTau2\|chr10 (29859080-29858026)
	1-1043, gnl\|Hg17\|chr14 (51266055-51267143)
	1-1043, gnl\|Mm7\|chr12 (68844981-68846021)

	fat (0.58971)
	mga (0.480615)
	liv (0.292569)
	ret (0.257467)
	mgm (0.180343)
	gul (0.177588)
	mcp (0.170648)
	fhi (0.169578)
	fco (0.157208)
	ski (0.146735)
	nca (0.136874)
	ste (0.135208)
	sug (0.127291)
	tra (0.123092)
	jca (0.11396)
	nbm (0.0993246)