Non-Coding RNA Search

Ss1.1-Pig4-TMW8055C06.3

Sequence:


               
               ATTGATCCTGTTGTGGTTGGGTTTCCTGTGGAGAGAGTAGTTTGTCCTATTGCACTAGAA
CATTATTTACTCACTAAATTGAGTTTTTCAGTCAATTAACGAATATTTATTAAAACATCT
ACTATGTGCCAGGCATGGTAGGGCTACAGTGGTAAGCAAGACAGAGCCCCTGCCCCCGAG
GAGCTTCCATCCTATTGGGGATGTTAAGGGGTGAACAGAATACCAATGTGTGTGCTGTAC
AGGAATTGTGCTATTTAAAAATAATTTGTATAAACTATAATGCTTAGCGCAGATGGCAAC
GTCTCTGCGCTATGTGAAAGCTGTGAAATAGTGCTCTAAGAGTTGGCAAGAGCCCCAGTT
TTATGTTTTTTCCCCCTCATTACAAACTTAGCAACTTTCTACACATTAGATGGAAGTGAA
TGACTCTAGCAAATAAAACAGCCACAAATACACCACAGACATCGCACTCCCCCAACTCCT
AGGTACCAAGGGCTGCAAGTACACCCCGTTAAAAGTGCAGACAGAGACTTTCCTCAATAA
AAGCTTGGAAGTGAGGAGGAGTGGGACATGCTGGTGGGTTTGTCTATTCCTTAACTAAAG
TGCCTCTATATATATTCTTTTCTATTTATAGCAGGAGAACTTGATCGGGCTCAAGTTTGG
AACTGTACTTTGAAAATGGCTTTGTTTTACAGTTTAAGGAATGGACAAGTGAAGGGAGAG
TTGCATAAAAGAGCAAGTTTGTGTCACATGTTCCTCTCGCCCTTCTGCATCACCCTCATT
TTGATACGGCCTTCCTGGTGGGCCTCCTTTACCATTTCCATTTTGGGTTTCTTTCCCCGA
AAGCTGTGTGCAGGTAATTCCACGTGCCATTGTTGAAAACAACCTACTTTTTAGATTGGT
GCTGGTGTAAGTAGCCACTTTTCTCTCTTGGGTGTGTATTTTTAAAGTTTTGTTTGTTTG
TTTGTTTTTTTTAAATTAATGCCAAAAAGAAAAAGCATTATAATTTGTAAACTTAATTAT
ATGTCTTGTATCTTATTAGCTTAGTAGTTGGAACCACTTAGTCTTTAGGTGCAAGACTGT
TGTTATAGTACCAAGAAAAAAATGTTGTATGTGTTATGAGACTGTACATTTTTTTAATAG
CAAAATGCAATAAAGAGATGAATTCATTTGGAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTGATCCTGTTGTGGTTGGGTTTCCTGTGGAGAGAGTAGTTTGTCCTATTGCACTAGAA
CATTATTTACTCACTAAATTGAGTTTTTCAGTCAATTAACGAATATTTATTAAAACATCT
ACTATGTGCCAGGCATGGTAGGGCTACAGTGGTAAGCAAGACAGAGCCCCTGCCCCCGAG
GAGCTTCCATCCTATTGGGGATGTTAAGGGGTGAACAGAATACCAATGTGTGTGCTGTAC
AGGAATTGTGCTATTTAAAAATAATTTGTATAAACTATAATGCTTAGCGCAGATGGCAAC
GTCTCTGCGCTATGTGAAAGCTGTGAAATAGTGCTCTAAGAGTTGGCAAGAGCCCCAGTT
TTATGTTTTTTCCCCCTCATTACAAACTTAGCAACTTTCTACACATTAGATGGAAGTGAA
TGACTCTAGCAAATAAAACAGCCACAAATACACCACAGACATCGCACTCCCCCAACTCCT
AGGTACCAAGGGCTGCAAGTACACCCCGTTAAAAGTGCAGACAGAGACTTTCCTCAATAA
AAGCTTGGAAGTGAGGAGGAGTGGGACATGCTGGTGGGTTTGTCTATTCCTTAACTAAAG
TGCCTCTATATATATTCTTTTCTATTTATAGCAGGAGAACTTGATCGGGCTCAAGTTTGG
AACTGTACTTTGAAAATGGCTTTGTTTTACAGTTTAAGGAATGGACAAGTGAAGGGAGAG
TTGCATAAAAGAGCAAGTTTGTGTCACATGTTCCTCTCGCCCTTCTGCATCACCCTCATT
TTGATACGGCCTTCCTGGTGGGCCTCCTTTACCATTTCCATTTTGGGTTTCTTTCCCCGA
AAGCTGTGTGCAGGTAATTCCACGTGCCATTGTTGAAAACAACCTACTTTTTAGATTGGT
GCTGGTGTAAGTAGCCACTTTTCTCTCTTGGGTGTGTATTTTTAAAGTTTTGTTTGTTTG
TTTGTTTTTTTTAAATTAATGCCAAAAAGAAAAAGCATTATAATTTGTAAACTTAATTAT
ATGTCTTGTATCTTATTAGCTTAGTAGTTGGAACCACTTAGTCTTTAGGTGCAAGACTGT
TGTTATAGTACCAAGAAAAAAATGTTGTATGTGTTATGAGACTGTACATTTTTTTAATAG
CAAAATGCAATAAAGAGATGAATTCATTTGGAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               965-1149, + strand, RNAz p=0.543935

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               965-1149, + strand, RNAz p=0.543935

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               789-1168, gnl|bosTau2|chr16 (31578584-31578968)
               

               
               789-1168, gnl|Hg17|chr14 (58907476-58907867)
               

               
               789-1168, gnl|Mm7|chr12 (69936476-69936855)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               789-1168, gnl|bosTau2|chr16 (31578584-31578968)
               

               
               789-1168, gnl|Hg17|chr14 (58907476-58907867)
               

               
               789-1168, gnl|Mm7|chr12 (69936476-69936855)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               fhi (0.339155)
               

               
               bla (0.248694)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               nco (0.161734)
               

               
               fat (0.147427)
               

               
               csk (0.140746)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               med (0.116252)
               

               
               spc (0.113366)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.339155)
               

               
               bla (0.248694)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               nco (0.161734)
               

               
               fat (0.147427)
               

               
               csk (0.140746)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               med (0.116252)
               

               
               spc (0.113366)

	789-1168, gnl\|bosTau2\|chr16 (31578584-31578968)
	789-1168, gnl\|Hg17\|chr14 (58907476-58907867)
	789-1168, gnl\|Mm7\|chr12 (69936476-69936855)

	fhi (0.339155)
	bla (0.248694)
	gul (0.177588)
	sin (0.174948)
	nco (0.161734)
	fat (0.147427)
	csk (0.140746)
	ova (0.129132)
	thg (0.126791)
	med (0.116252)
	spc (0.113366)