Non-Coding RNA Search

Ss1.1-Pig4-TMW8055C15.3

Sequence:


               
               CGGGAGCCACGCTGTACCGAGAAGAGGGCCCCCCGGCCACGGCCACAGCCTTCCTGGGGG
GCTGTGGCCTGAGCCCCGCCCCTGCCGGGGACTACGGCTTTCCAGCAGATGGCAAGCCAT
GCGTGGCAGGTGCGCTGACGGCCATCGTGGCCGGTGAGGAGGAGCTCCGTGGCAGCTATA
ACTGGGACTACCTGCTGAGCTGGTGCCCTCAGTTCCAGCCGCTGGCCAGTGTTTTCACAG
AGATCGCCCGGCTCAAGGATGAGGCTCGGCCATGTCCCCCGGCTCCCCGAATTGACCCAC
CGCCCCTCATCACTGCCGTGGCCCACCCGGGAGCCAAGTCTGTGCCCCCCAAGCCAGCCA
GCACGGCTGCAGCCCGGGCCATCTTCCCTCCAGCCTCTCACCGCTCCCCCATCAGCCATG
AAGGTTCCCTGTCCTCAGCTGCCATGTCCCCCAGCTTCTCACCTTCCCTGTCTCCTCTGG
CTGCTCGCTCACCCGTGGTCTCACCGTTTGGGGTGGCCCAGGGCCCCTCAGCCTCAGCAC
TCAGTGCAGAGTCCGGCCTGGAGCCACCCGACGACACGGAGCTGCACATCTAGCTGTGGC
CCGGGCTGGGCCCCGACCTGGGATGCTCACTGCGTCCCCAACGCAGGCCCCGTCTGAGCC
TGCCCCGGGCAGCCTCGGACCACGATTGGCCACGGGGGCGGGGGGCCTGCCCCCGTCCCT
GAGTCCTCCACTGGGGCAGGTCTCCCATCTCACCACAGCCCTGGCAGAGCACCAGTACCA
CGAGGCCCTGCCGGGCACTGCCCTGTGGCCAGGTCCAGCGTGGGGAGAAAGATGAAGAGG
CGGCAGGCTCGGTTTCTCCTCACCGAGGGCTTCTTGCCCTGTGTCAGCACCCTGAGATGG
AGCCGAGACTTTATTTATTGGGGGGTAGGGGGGATGGGGGCGGTCCCTCCAACCTTTGGG
GCCCAGCTCCTTTGGGTTCCGCTGACACCCCTGCCCCTGCCCAGAACCAAGTGCCAATTC
TCACTCTGGAGCCTTAATAAACTGCAGTTTGTATCCAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGGAGCCACGCTGTACCGAGAAGAGGGCCCCCCGGCCACGGCCACAGCCTTCCTGGGGG
GCTGTGGCCTGAGCCCCGCCCCTGCCGGGGACTACGGCTTTCCAGCAGATGGCAAGCCAT
GCGTGGCAGGTGCGCTGACGGCCATCGTGGCCGGTGAGGAGGAGCTCCGTGGCAGCTATA
ACTGGGACTACCTGCTGAGCTGGTGCCCTCAGTTCCAGCCGCTGGCCAGTGTTTTCACAG
AGATCGCCCGGCTCAAGGATGAGGCTCGGCCATGTCCCCCGGCTCCCCGAATTGACCCAC
CGCCCCTCATCACTGCCGTGGCCCACCCGGGAGCCAAGTCTGTGCCCCCCAAGCCAGCCA
GCACGGCTGCAGCCCGGGCCATCTTCCCTCCAGCCTCTCACCGCTCCCCCATCAGCCATG
AAGGTTCCCTGTCCTCAGCTGCCATGTCCCCCAGCTTCTCACCTTCCCTGTCTCCTCTGG
CTGCTCGCTCACCCGTGGTCTCACCGTTTGGGGTGGCCCAGGGCCCCTCAGCCTCAGCAC
TCAGTGCAGAGTCCGGCCTGGAGCCACCCGACGACACGGAGCTGCACATCTAGCTGTGGC
CCGGGCTGGGCCCCGACCTGGGATGCTCACTGCGTCCCCAACGCAGGCCCCGTCTGAGCC
TGCCCCGGGCAGCCTCGGACCACGATTGGCCACGGGGGCGGGGGGCCTGCCCCCGTCCCT
GAGTCCTCCACTGGGGCAGGTCTCCCATCTCACCACAGCCCTGGCAGAGCACCAGTACCA
CGAGGCCCTGCCGGGCACTGCCCTGTGGCCAGGTCCAGCGTGGGGAGAAAGATGAAGAGG
CGGCAGGCTCGGTTTCTCCTCACCGAGGGCTTCTTGCCCTGTGTCAGCACCCTGAGATGG
AGCCGAGACTTTATTTATTGGGGGGTAGGGGGGATGGGGGCGGTCCCTCCAACCTTTGGG
GCCCAGCTCCTTTGGGTTCCGCTGACACCCCTGCCCCTGCCCAGAACCAAGTGCCAATTC
TCACTCTGGAGCCTTAATAAACTGCAGTTTGTATCCAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|21732303|emb|CAD38541.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|21732303|emb|CAD38541.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               3-681, + strand, RNAz p=0.92813
               

               
               906-1017, - strand, RNAz p=0.966748

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               3-681, + strand, RNAz p=0.92813
               

               
               906-1017, - strand, RNAz p=0.966748

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AB053446, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AB053446, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-1057, gnl|bosTau2|chr15 (28917736-28916679)
               

               
               3-1057, gnl|Hg17|chr11 (6600176-6599133)
               

               
               3-1057, gnl|Mm7|chr7 (101810469-101809411)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-1057, gnl|bosTau2|chr15 (28917736-28916679)
               

               
               3-1057, gnl|Hg17|chr11 (6600176-6599133)
               

               
               3-1057, gnl|Mm7|chr7 (101810469-101809411)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               fce (0.271592)
               

               
               ton (0.1755)
               

               
               hyp (0.142837)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               ebs (0.118301)
               

               
               med (0.116252)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               ton (0.1755)
               

               
               hyp (0.142837)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               ebs (0.118301)
               

               
               med (0.116252)

	3-681, + strand, RNAz p=0.92813
	906-1017, - strand, RNAz p=0.966748

	3-1057, gnl\|bosTau2\|chr15 (28917736-28916679)
	3-1057, gnl\|Hg17\|chr11 (6600176-6599133)
	3-1057, gnl\|Mm7\|chr7 (101810469-101809411)

	fce (0.271592)
	ton (0.1755)
	hyp (0.142837)
	nmm (0.132802)
	ute (0.132784)
	ese (0.126502)
	ebs (0.118301)
	med (0.116252)