Non-Coding RNA Search

Ss1.1-Pig4-TMW8055D10.5.5

Sequence:


               
               GCAGCGGAGGGGTACAGCTGTCTAAATGCCGAGGCTCGGCGGGCGTGGGCTCTGGCTGGG
CCTGGCCGCGGCGGCGGTGGCGGCGATGATCGCTCGGCTGACAGGCTGGTGGAGTCCCCG
CGCTGACTTCCGCCTTTTCATACCCGAGGAGCTGGCCCGCTATCGCGGCCGCCCTGGGGA
CCCTGGCCTCTACTTGGCCTTGCTCGGCCGCGTCTACGATGTGTCCTCTGGCCGGAGGCA
CTACGAACCTGGGGCCCCGTATAGCGGCTTCGCAGGCCGAGATGCATCCAGAGCGTTTGT
GACCGGGGACTACTCTGAAACAGGCCTTGTGGATGATGTATCTGACCTGTCATTTTCTGA
GATGCTGACACTCCAAAACTGGCTTTCATTCTACGAGAAGAATTATGAATTCATTGGAAG
GGTGAGCGGACGCTTCTATGGCCAGGATGGGCTGCCCACCCCAGAACTGACCCGGACAGA
AGCCATGATCGCCCGAGGCGTGCAGGCAAATAAGCAGGACCTGGAAGAGAAGCAGAGGTT
CCCCCCGTGCAATGCCGAGTGGAGCTCCGCCCGGGGCAGCCGCCTCTGGTGTTCCCCGAA
GAGTGGAGGTGTGAGCAGAGACTGGACTGGAGTCCCCAGGAAGCTGTTTAAGCCAGGTGC
CAAGGAGCCCCACTGCGTGTGCGTGAAAACAACCGGCGCCCCTAGCGACCAGACGCCGGA
CAGCCCCCCACACAGGAATCGTGGGGACTTGGACCACCCCAGCTTGGCCGAGTACCCAGG
CTGCCCACCCCTGGCCACCTCGTGCTCCCTCCCCCTCTAAAGTGGTTCCCTGTATGCTGC
CCACCCACCAAGAGCCCTGCCTGGAAGCCTAGTGGCTCCTGACCTGAACCAAGAGGGCCT
GGAAGGAGAGGAGCGTGGCTGTGCTCCGCGAACGTGACTGATGCCGCCTCACCGTGACTC
ACCATTCTGGTGCCTGAGGCCACAGCTTGGCAACCTGCCGCGTACCGTCAGCCTGTTTCC
GCCACTGCGCCCTTCATCTCCTCGCCCACCCGCTTTGGAGTCCGCAGGTGTGAGTGAGCA
CACACAAGACCAACTCAAAACTAGCCGGCTGGACACACAAAGAGGCGGGGAGCCCCGGGA
GCTTCCTTCCAAGACTTTGGGACCGCCTAGATCAGCTGTGCCCTGTCTCTAACTCCCAAC
CTGGTCGGGGGATCGGGGGCACTGGCAAGAGAGACCCCGTCTTTCCCTTACACCTCCGAA
ACAAGCAGACACGTCCAGAAAAGTCGTGTAAATTAACGGTGTCGCCTAAACAAGGTCCTA
CTCCCCGTACAGCACGGGGAACGATCCTTCATCGGCATCTTGTGATGAACCACAGCGGAA
AGAACGGGTAGAGGCGTGGCGAGCTACAGACAGCTGCGTGACTGAGCCACTCTCTCACAC
ACTGCAGGTCGACTAAACTAAAATGGGGAGGAAAGGTGTTAACCCTGTTCCGGTCACTGC
CGGGACCCCCGACTTCGACGGCCTTTCTGTATGTAAGCTCTCTACCGGAAGGCTTTGGTT
GAATTTACAACCGAAAGCCACACTGAGTGACTCTGAGCTAGACCACTTCAGCAAGAGGTG
AAAACAGGATAGGCTAATTCGAGAAATGGAAAAGCCTTTACTTGTATGGATGCAGCAAAT
CCAGCTGCCTCGGAACAAAGCAACAATTTAAAAGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGCGGAGGGGTACAGCTGTCTAAATGCCGAGGCTCGGCGGGCGTGGGCTCTGGCTGGG
CCTGGCCGCGGCGGCGGTGGCGGCGATGATCGCTCGGCTGACAGGCTGGTGGAGTCCCCG
CGCTGACTTCCGCCTTTTCATACCCGAGGAGCTGGCCCGCTATCGCGGCCGCCCTGGGGA
CCCTGGCCTCTACTTGGCCTTGCTCGGCCGCGTCTACGATGTGTCCTCTGGCCGGAGGCA
CTACGAACCTGGGGCCCCGTATAGCGGCTTCGCAGGCCGAGATGCATCCAGAGCGTTTGT
GACCGGGGACTACTCTGAAACAGGCCTTGTGGATGATGTATCTGACCTGTCATTTTCTGA
GATGCTGACACTCCAAAACTGGCTTTCATTCTACGAGAAGAATTATGAATTCATTGGAAG
GGTGAGCGGACGCTTCTATGGCCAGGATGGGCTGCCCACCCCAGAACTGACCCGGACAGA
AGCCATGATCGCCCGAGGCGTGCAGGCAAATAAGCAGGACCTGGAAGAGAAGCAGAGGTT
CCCCCCGTGCAATGCCGAGTGGAGCTCCGCCCGGGGCAGCCGCCTCTGGTGTTCCCCGAA
GAGTGGAGGTGTGAGCAGAGACTGGACTGGAGTCCCCAGGAAGCTGTTTAAGCCAGGTGC
CAAGGAGCCCCACTGCGTGTGCGTGAAAACAACCGGCGCCCCTAGCGACCAGACGCCGGA
CAGCCCCCCACACAGGAATCGTGGGGACTTGGACCACCCCAGCTTGGCCGAGTACCCAGG
CTGCCCACCCCTGGCCACCTCGTGCTCCCTCCCCCTCTAAAGTGGTTCCCTGTATGCTGC
CCACCCACCAAGAGCCCTGCCTGGAAGCCTAGTGGCTCCTGACCTGAACCAAGAGGGCCT
GGAAGGAGAGGAGCGTGGCTGTGCTCCGCGAACGTGACTGATGCCGCCTCACCGTGACTC
ACCATTCTGGTGCCTGAGGCCACAGCTTGGCAACCTGCCGCGTACCGTCAGCCTGTTTCC
GCCACTGCGCCCTTCATCTCCTCGCCCACCCGCTTTGGAGTCCGCAGGTGTGAGTGAGCA
CACACAAGACCAACTCAAAACTAGCCGGCTGGACACACAAAGAGGCGGGGAGCCCCGGGA
GCTTCCTTCCAAGACTTTGGGACCGCCTAGATCAGCTGTGCCCTGTCTCTAACTCCCAAC
CTGGTCGGGGGATCGGGGGCACTGGCAAGAGAGACCCCGTCTTTCCCTTACACCTCCGAA
ACAAGCAGACACGTCCAGAAAAGTCGTGTAAATTAACGGTGTCGCCTAAACAAGGTCCTA
CTCCCCGTACAGCACGGGGAACGATCCTTCATCGGCATCTTGTGATGAACCACAGCGGAA
AGAACGGGTAGAGGCGTGGCGAGCTACAGACAGCTGCGTGACTGAGCCACTCTCTCACAC
ACTGCAGGTCGACTAAACTAAAATGGGGAGGAAAGGTGTTAACCCTGTTCCGGTCACTGC
CGGGACCCCCGACTTCGACGGCCTTTCTGTATGTAAGCTCTCTACCGGAAGGCTTTGGTT
GAATTTACAACCGAAAGCCACACTGAGTGACTCTGAGCTAGACCACTTCAGCAAGAGGTG
AAAACAGGATAGGCTAATTCGAGAAATGGAAAAGCCTTTACTTGTATGGATGCAGCAAAT
CCAGCTGCCTCGGAACAAAGCAACAATTTAAAAGCA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|21389421|ref|NP_653212.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|21389421|ref|NP_653212.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               7-1670, - strand, RNAz p=0.738059
               

               
               159-276, - strand, RNAz p=0.540601

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               7-1670, - strand, RNAz p=0.738059
               

               
               159-276, - strand, RNAz p=0.540601

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               7-276, gnl|bosTau2|chr19 (19279400-19279669)
               

               
               7-276, gnl|Hg17|chr17 (3993781-3994049)
               

               
               7-276, gnl|Mm7|chr11 (72877355-72877086)
               


               
               602-1227, gnl|bosTau2|chr19 (19285025-19285646)
               

               
               602-1227, gnl|Mm7|chr11 (72860528-72859938)
               


               
               1513-1710, gnl|bosTau2|chr19 (19285749-19285941)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-276, gnl|bosTau2|chr19 (19279400-19279669)
               

               
               7-276, gnl|Hg17|chr17 (3993781-3994049)
               

               
               7-276, gnl|Mm7|chr11 (72877355-72877086)
               


               
               602-1227, gnl|bosTau2|chr19 (19285025-19285646)
               

               
               602-1227, gnl|Mm7|chr11 (72860528-72859938)
               


               
               1513-1710, gnl|bosTau2|chr19 (19285749-19285941)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               pgl (0.236967)
               

               
               cki (0.165235)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.236967)
               

               
               cki (0.165235)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

	7-1670, - strand, RNAz p=0.738059
	159-276, - strand, RNAz p=0.540601

	7-276, gnl\|bosTau2\|chr19 (19279400-19279669)
	7-276, gnl\|Hg17\|chr17 (3993781-3994049)
	7-276, gnl\|Mm7\|chr11 (72877355-72877086)

	602-1227, gnl\|bosTau2\|chr19 (19285025-19285646)
	602-1227, gnl\|Mm7\|chr11 (72860528-72859938)

	1513-1710, gnl\|bosTau2\|chr19 (19285749-19285941)

	pgl (0.236967)
	cki (0.165235)
	nca (0.136874)
	pla (0.133672)
	ebs (0.118301)
	ecc (0.115035)