Ss1.1-Pig4-TMW8055D20.3.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACCTTAAGGGCCGGGCGGGGCGCGGAGCCGGGTCCGGACCAGGCGGGGTCGGGACCAGGC GGGGTCGGGCCGCACGGGCGCGGGAGCCATGGCGTCGTCCGGGCCGCCGCCGCCGCTGCT GCTGCTGCTGCTCGTGCTGCTGGCGGGCGCGGCGCGGGCCGGCCTCCACTTCCGCCCGGG CTGCAGCTGCTACCGGCCCCTGCGCGGGGACCAGCGGACCCAGTTGGGGCACAGGACGTA CCCCCGGCCTCATGAGTACCTGTCCCCATCGGATCTGCCCAGGAGCTGGGACTGGCGCAA CGTGAATGGGGTCAACTATGCCAGTGTCACCAGGAACCAGCACATCCCCCAGTACTGCGG CTCCTGCTGGGCCCACGGCAGCACCAGCGCCATGGCTGACAGAATCAACATCAAGAGGAA GGGGGCCTGGCCCTCCACGCTGCTGTCTGTGCAGCATGTCATCGACTGCGGCAACGCCGG CTCCTGCGAGGGGGGCGACGACCTGCCCGTGTGGGCCTACGCCCACCGGCACGGCATCCC GGATGAGACCTGCAACAACTACCAGGCCAAGGACCAAGTGTGTGACAAGTTTAACCAGTG TGGAACGTGCACTGAGTTCAAAGAATGCCACGTCATCCAGAACTACACCCTCTGGAAGGT TGGCGACTACGGCTCCGTCTCCGGGCGGGAGAAGATGATGGCTGAAATCTACGCCAACGG GCCCATCAGCTGCGGCATCATGGCCACGGAGAAGATGTCGAACTACACCGGCGGCATCTA CGCCGAGTACAAGGACCAGGCCTACATCAACCACATCGTGTCGGTGGCCGGGTGGGGCGT CAGCGGCGGGACGGAGTACTGGATTGTCCGGAATTCGTGGGGCGAGCCCTGGGGTGAGCG AGGCTGGATGAGGATTGTGACCAGCACCTACAAAGACGGCAGGGGCGCCCACTACAACCT TGCCATCGAGGAGAACTGCACCTTCGGGGACCCCATCGTTTGAGGCCGACGTCTCCGGAA GTCTCATGAGCCCAGGCCCGAGGGGACCCCAAAGTCGTGGGCACGGGCTTGGTGCTGCCC CGGTGAGAGGGAACTGGGGCTGATGGGCAAGGATGTGCCAGCTGTAGCAGCTGCGAGCAC CCAGGAGGGCAGCTGGCAGGGAGCGGCACGGGCTGAAGGGGGACGATGGGCACCTGCACA GGACACCCTGCCACCCCGAGCAGAGCGGCCCACGTGCCCGCCGTGCTCCTGCGTCTGGAA TGTATTTAAGAGAGTTGAGACCCATCACCAGTTCCTGTCGCCGTGAGGTGGGGGTGGGTG GGGGGAGATGGCAATGTCACCTCACACGAGTGATGAATAAAACGCACGACTCCACAGCAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACCTTAAGGGCCGGGCGGGGCGCGGAGCCGGGTCCGGACCAGGCGGGGTCGGGACCAGGC GGGGTCGGGCCGCACGGGCGCGGGAGCCATGGCGTCGTCCGGGCCGCCGCCGCCGCTGCT GCTGCTGCTGCTCGTGCTGCTGGCGGGCGCGGCGCGGGCCGGCCTCCACTTCCGCCCGGG CTGCAGCTGCTACCGGCCCCTGCGCGGGGACCAGCGGACCCAGTTGGGGCACAGGACGTA CCCCCGGCCTCATGAGTACCTGTCCCCATCGGATCTGCCCAGGAGCTGGGACTGGCGCAA CGTGAATGGGGTCAACTATGCCAGTGTCACCAGGAACCAGCACATCCCCCAGTACTGCGG CTCCTGCTGGGCCCACGGCAGCACCAGCGCCATGGCTGACAGAATCAACATCAAGAGGAA GGGGGCCTGGCCCTCCACGCTGCTGTCTGTGCAGCATGTCATCGACTGCGGCAACGCCGG CTCCTGCGAGGGGGGCGACGACCTGCCCGTGTGGGCCTACGCCCACCGGCACGGCATCCC GGATGAGACCTGCAACAACTACCAGGCCAAGGACCAAGTGTGTGACAAGTTTAACCAGTG TGGAACGTGCACTGAGTTCAAAGAATGCCACGTCATCCAGAACTACACCCTCTGGAAGGT TGGCGACTACGGCTCCGTCTCCGGGCGGGAGAAGATGATGGCTGAAATCTACGCCAACGG GCCCATCAGCTGCGGCATCATGGCCACGGAGAAGATGTCGAACTACACCGGCGGCATCTA CGCCGAGTACAAGGACCAGGCCTACATCAACCACATCGTGTCGGTGGCCGGGTGGGGCGT CAGCGGCGGGACGGAGTACTGGATTGTCCGGAATTCGTGGGGCGAGCCCTGGGGTGAGCG AGGCTGGATGAGGATTGTGACCAGCACCTACAAAGACGGCAGGGGCGCCCACTACAACCT TGCCATCGAGGAGAACTGCACCTTCGGGGACCCCATCGTTTGAGGCCGACGTCTCCGGAA GTCTCATGAGCCCAGGCCCGAGGGGACCCCAAAGTCGTGGGCACGGGCTTGGTGCTGCCC CGGTGAGAGGGAACTGGGGCTGATGGGCAAGGATGTGCCAGCTGTAGCAGCTGCGAGCAC CCAGGAGGGCAGCTGGCAGGGAGCGGCACGGGCTGAAGGGGGACGATGGGCACCTGCACA GGACACCCTGCCACCCCGAGCAGAGCGGCCCACGTGCCCGCCGTGCTCCTGCGTCTGGAA TGTATTTAAGAGAGTTGAGACCCATCACCAGTTCCTGTCGCCGTGAGGTGGGGGTGGGTG GGGGGAGATGGCAATGTCACCTCACACGAGTGATGAATAAAACGCACGACTCCACAGCAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 272-396, - strand, RNAz p=0.519387 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 272-396, - strand, RNAz p=0.519387 |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 233-396, gnl|bosTau2|chr13 (37759877-37760040) | |
| 233-396, gnl|Hg17|chr20 (57014937-57014774) | |
| 233-396, gnl|Mm7|chr2 (174182724-174182561) | |
| 574-729, gnl|bosTau2|chr13 (37765707-37765862) | |
| 574-729, gnl|canFam2|chr24 (46725505-46725702) | |
| 574-729, gnl|danRer3|chrNA (38955999-38956175) | |
| 574-729, gnl|dasNov1|scaffold_44068 (1181-976) | |
| 574-729, gnl|fr1|chrUn (176358452-176358621) | |
| 574-729, gnl|galGal2|chr20 (10415947-10415741) | |
| 574-729, gnl|hg17|chr20 (57006044-57006250) | |
| 574-729, gnl|Hg17|chr20 (57006209-57006053) | |
| 574-729, gnl|loxAfr1|scaffold_23990 (47544-47345) | |
| 574-729, gnl|mm7|chr2 (174173443-174173642) | |
| 574-729, gnl|Mm7|chr2 (174173602-174173450) | |
| 574-729, gnl|monDom2|scaffold_1 (173722935-173723132) | |
| 574-729, gnl|oryCun1|scaffold_113441 (5617-5820) | |
| 574-729, gnl|panTro1|chr21 (60000933-60001137) | |
| 574-729, gnl|rheMac2|chr10 (5529832-5529628) | |
| 574-729, gnl|tetNig1|chr11 (2146303-2146158) | |
| 574-729, gnl|xenTro1|scaffold_948 (21650-21478) | |
| 892-1186, gnl|bosTau2|chr13 (37767836-37768136) | |
| 892-1186, gnl|Hg17|chr20 (57004210-57003924) | |
| 892-1186, gnl|Mm7|chr2 (174172377-174172095) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 233-396, gnl|bosTau2|chr13 (37759877-37760040) | |
| 233-396, gnl|Hg17|chr20 (57014937-57014774) | |
| 233-396, gnl|Mm7|chr2 (174182724-174182561) | |
| 574-729, gnl|bosTau2|chr13 (37765707-37765862) | |
| 574-729, gnl|canFam2|chr24 (46725505-46725702) | |
| 574-729, gnl|danRer3|chrNA (38955999-38956175) | |
| 574-729, gnl|dasNov1|scaffold_44068 (1181-976) | |
| 574-729, gnl|fr1|chrUn (176358452-176358621) | |
| 574-729, gnl|galGal2|chr20 (10415947-10415741) | |
| 574-729, gnl|hg17|chr20 (57006044-57006250) | |
| 574-729, gnl|Hg17|chr20 (57006209-57006053) | |
| 574-729, gnl|loxAfr1|scaffold_23990 (47544-47345) | |
| 574-729, gnl|mm7|chr2 (174173443-174173642) | |
| 574-729, gnl|Mm7|chr2 (174173602-174173450) | |
| 574-729, gnl|monDom2|scaffold_1 (173722935-173723132) | |
| 574-729, gnl|oryCun1|scaffold_113441 (5617-5820) | |
| 574-729, gnl|panTro1|chr21 (60000933-60001137) | |
| 574-729, gnl|rheMac2|chr10 (5529832-5529628) | |
| 574-729, gnl|tetNig1|chr11 (2146303-2146158) | |
| 574-729, gnl|xenTro1|scaffold_948 (21650-21478) | |
| 892-1186, gnl|bosTau2|chr13 (37767836-37768136) | |
| 892-1186, gnl|Hg17|chr20 (57004210-57003924) | |
| 892-1186, gnl|Mm7|chr2 (174172377-174172095) |
| Expressed library(ies): 27 entry(ies) | More info |
| Expressed library(ies): 27 entry(ies) | Help | Less info |
| ute (4.78024) | |
| nje (1.6592) | |
| csp (1.1283) | |
| cag (0.755972) | |
| ill (0.702371) | |
| cly (0.603209) | |
| jej (0.593531) | |
| eje (0.593003) | |
| col (0.585023) | |
| elu (0.385356) | |
| jca (0.34188) | |
| nco (0.323468) | |
| cli (0.305623) | |
| lnt (0.284616) | |
| cga (0.279096) | |
| clu (0.239292) | |
| fcc (0.197785) | |
| nlu (0.191681) | |
| ton (0.1755) | |
| mcp (0.170648) | |
| cki (0.165235) | |
| nca (0.136874) | |
| che (0.136314) | |
| cov (0.132153) | |
| eru (0.120048) | |
| cty (0.10408) | |
| nbm (0.0993246) |
| Expressed library(ies): 27 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ute (4.78024) | |
| nje (1.6592) | |
| csp (1.1283) | |
| cag (0.755972) | |
| ill (0.702371) | |
| cly (0.603209) | |
| jej (0.593531) | |
| eje (0.593003) | |
| col (0.585023) | |
| elu (0.385356) | |
| jca (0.34188) | |
| nco (0.323468) | |
| cli (0.305623) | |
| lnt (0.284616) | |
| cga (0.279096) | |
| clu (0.239292) | |
| fcc (0.197785) | |
| nlu (0.191681) | |
| ton (0.1755) | |
| mcp (0.170648) | |
| cki (0.165235) | |
| nca (0.136874) | |
| che (0.136314) | |
| cov (0.132153) | |
| eru (0.120048) | |
| cty (0.10408) | |
| nbm (0.0993246) |