Ss1.1-Pig4-TMW8055E10.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGGGCGCTACGGGTCTGAGTACGGTGCGCGGCGGGACGACGAACGAGTTGGGATGGCAAC CGGCTGGGGGAGCCTCTTGCAGGATGAGCAGCAGCTGGAGGAGCTGGCAAGGCAGGCTGT GGACCGGGCACTGGCTGAGGGAGTGTTGCTAAGGACCTCGCAGGAGCCCAGCTCCTCAGA GGTGGTGAGCTATGCCCCGTTCACACTCTTCCCCTCACTGGTCCCCAGTGCTCTGCTAGA GCAGGCCTATGCTGTGCAGATGGACTTCAACCTGCTGGTGGATGCTGTCAGTCAGAACGC TTCCTTTCTGGAGCAAACTCTCTCCAGCACCATCAAAAGGGACAACTTTACTGCTCGTCT TTTTGACATCCACAAGCAAGTCCTGAAAGAAGGCATTGCCCAGACTGTGTTCCTGGGCCT GAATCGCTCAGACTACATGTTCCAGCACAACGCAGATGGCTCCTCAGCCCTGAAACAGAT TGAAATCAATACCATCTCTGCCAGCTTTGGGGGCCTAGCCTCCCGCACCCCAGCTGTGCA CCGACATGTTCTCAATGTCCTGAGTAAGACCAAAGAAGCTGCCAAGATCCTCTCCAATAA TCCCAGCAAGGGACTGGCCATGGGGATTGCCAAAGCCTGGGAGCTTTACGGCTCAGCCAA TGCTCTGGTGCTACTGGTTGCTCAAGAGAAGGAAAGGAATATATTTGACCAGCGTGCCAT AGAGAATGAGCTACTGGCCAGGAATATCCATGTAATCCGGCGAAGGTTTGAAGACATCTC TGAAAAAGGATCTCTAGATCAAGACCGAAAGCTATTTATGGACGGCCAGGAAGTTGCTGT GGTTTACTTCCGGGATGGCTACATACCAAGTCAGTACAGTCTACAGAATTGGGAAGCACG CCTCCTGCTGGAGAGATCACGTGCTGTCAAGTGCCCAGACATTGCCACCCAGCTGGCTGG GACTAAGAAGGTGCAACAGGAGCTAAGCAGAGTAGGCGTGCTGGAGGTGTTGCTCCCTGA CCAGCCCGAGGCTGTGGCCCGCCTCCGTGCCACCTTTGCTGGCCTCTATTCACTGGATAT GGGTGAAGAAGGGGACCAGGCCATCGCTGAGGCCATTGCTGCCCCTAGCCACTTCGTGCT CAAGCCCCAGAGAGAGGGTGGAGGTAACAACCTATATGGGGAGGAGATGGTACAGGCCTT GGAGCGGCTGAAGGACAGTGAGGAGAGAGCCTCATACATCCTCATGGAGAAAATCGAACC TGAACCTTTTGAGAATTGTCTGCTACGACCTGGCAGCCCTGCCCGAGTGGTCCGATGCAT CTCCGAGCTGGGCATCTTCGGGGTCTATGTCAGGCAGGGAAAGACACTTGTGGTGAACAA GCACGTGGGACATCTGCTTCGAACCAAAGCCATTGAGCATGCAGATGGTGGTGTGGCAGC AGGAGTGGCCGTCCTCGACAACCCATACCCTGTGTGAGGGCACAGCCAGGGCTGCCTGGA CTTCGATCAAAAGACCTTCTATCCTTTGTACTTATTCCTCTCCTAGCTGCCCTCCCACTA CCTGGGAAGGCTAGTCTCTTCTAGAGATTTTCAGGGTCTTCATGGAAGGGTGAATGCTGG GTCCCTTCCCCAAGCTCTCCCATCTGAGGACCAGAAAAGCTGTGGTTTCCCTTAGGTATG ATCTAGGGACCCCTGAATCCTCAGGGTATAAGTATACCTCAGAAGAAGCTGATATGACCT AAGGGTCCCTAACCCGGCCACCCTCCTGTCAGCCCCTTGTCAGCCCTTTCAGCAGGTGTG TCTGATCTGGGATAGGACTGAGCTGAGGGGTAGGAGGAAAAGGGTGGAAGGGCACCGCCT TTCCCCACCTCTGCCTTAAATAAAACTACTTTGCTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGGGCGCTACGGGTCTGAGTACGGTGCGCGGCGGGACGACGAACGAGTTGGGATGGCAAC CGGCTGGGGGAGCCTCTTGCAGGATGAGCAGCAGCTGGAGGAGCTGGCAAGGCAGGCTGT GGACCGGGCACTGGCTGAGGGAGTGTTGCTAAGGACCTCGCAGGAGCCCAGCTCCTCAGA GGTGGTGAGCTATGCCCCGTTCACACTCTTCCCCTCACTGGTCCCCAGTGCTCTGCTAGA GCAGGCCTATGCTGTGCAGATGGACTTCAACCTGCTGGTGGATGCTGTCAGTCAGAACGC TTCCTTTCTGGAGCAAACTCTCTCCAGCACCATCAAAAGGGACAACTTTACTGCTCGTCT TTTTGACATCCACAAGCAAGTCCTGAAAGAAGGCATTGCCCAGACTGTGTTCCTGGGCCT GAATCGCTCAGACTACATGTTCCAGCACAACGCAGATGGCTCCTCAGCCCTGAAACAGAT TGAAATCAATACCATCTCTGCCAGCTTTGGGGGCCTAGCCTCCCGCACCCCAGCTGTGCA CCGACATGTTCTCAATGTCCTGAGTAAGACCAAAGAAGCTGCCAAGATCCTCTCCAATAA TCCCAGCAAGGGACTGGCCATGGGGATTGCCAAAGCCTGGGAGCTTTACGGCTCAGCCAA TGCTCTGGTGCTACTGGTTGCTCAAGAGAAGGAAAGGAATATATTTGACCAGCGTGCCAT AGAGAATGAGCTACTGGCCAGGAATATCCATGTAATCCGGCGAAGGTTTGAAGACATCTC TGAAAAAGGATCTCTAGATCAAGACCGAAAGCTATTTATGGACGGCCAGGAAGTTGCTGT GGTTTACTTCCGGGATGGCTACATACCAAGTCAGTACAGTCTACAGAATTGGGAAGCACG CCTCCTGCTGGAGAGATCACGTGCTGTCAAGTGCCCAGACATTGCCACCCAGCTGGCTGG GACTAAGAAGGTGCAACAGGAGCTAAGCAGAGTAGGCGTGCTGGAGGTGTTGCTCCCTGA CCAGCCCGAGGCTGTGGCCCGCCTCCGTGCCACCTTTGCTGGCCTCTATTCACTGGATAT GGGTGAAGAAGGGGACCAGGCCATCGCTGAGGCCATTGCTGCCCCTAGCCACTTCGTGCT CAAGCCCCAGAGAGAGGGTGGAGGTAACAACCTATATGGGGAGGAGATGGTACAGGCCTT GGAGCGGCTGAAGGACAGTGAGGAGAGAGCCTCATACATCCTCATGGAGAAAATCGAACC TGAACCTTTTGAGAATTGTCTGCTACGACCTGGCAGCCCTGCCCGAGTGGTCCGATGCAT CTCCGAGCTGGGCATCTTCGGGGTCTATGTCAGGCAGGGAAAGACACTTGTGGTGAACAA GCACGTGGGACATCTGCTTCGAACCAAAGCCATTGAGCATGCAGATGGTGGTGTGGCAGC AGGAGTGGCCGTCCTCGACAACCCATACCCTGTGTGAGGGCACAGCCAGGGCTGCCTGGA CTTCGATCAAAAGACCTTCTATCCTTTGTACTTATTCCTCTCCTAGCTGCCCTCCCACTA CCTGGGAAGGCTAGTCTCTTCTAGAGATTTTCAGGGTCTTCATGGAAGGGTGAATGCTGG GTCCCTTCCCCAAGCTCTCCCATCTGAGGACCAGAAAAGCTGTGGTTTCCCTTAGGTATG ATCTAGGGACCCCTGAATCCTCAGGGTATAAGTATACCTCAGAAGAAGCTGATATGACCT AAGGGTCCCTAACCCGGCCACCCTCCTGTCAGCCCCTTGTCAGCCCTTTCAGCAGGTGTG TCTGATCTGGGATAGGACTGAGCTGAGGGGTAGGAGGAAAAGGGTGGAAGGGCACCGCCT TTCCCCACCTCTGCCTTAAATAAAACTACTTTGCTG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 73 entry(ies) | More info |
| Aligned organism(s): 73 entry(ies) | Help | Less info |
| 47-177, gnl|bosTau2|chr13 (46594785-46594915) | |
| 47-177, gnl|canFam2|chr24 (26968733-26968844) | |
| 47-177, gnl|dasNov1|scaffold_108901 (2206-2094) | |
| 47-177, gnl|echTel1|scaffold_309010 (152904-153016) | |
| 47-177, gnl|hg17|chr20 (33003168-33003279) | |
| 47-177, gnl|Hg17|chr20 (33003324-33003192) | |
| 47-177, gnl|loxAfr1|scaffold_9094 (18187-18075) | |
| 47-177, gnl|mm7|chr2 (155328295-155328391) | |
| 47-177, gnl|Mm7|chr2 (155328434-155328304) | |
| 47-177, gnl|monDom2|scaffold_6 (12059755-12059642) | |
| 47-177, gnl|panTro1|chr21 (35010855-35010966) | |
| 47-177, gnl|rheMac2|chr10 (29607992-29607881) | |
| 47-177, gnl|rn3|chr3 (145988464-145988560) | |
| 47-177, gnl|tetNig1|chrUn_random (97533501-97533378) | |
| 47-177, gnl|xenTro1|scaffold_35 (3230976-3230878) | |
| 180-327, gnl|bosTau2|chr13 (46600869-46601016) | |
| 180-327, gnl|canFam2|chr24 (26963316-26963526) | |
| 180-327, gnl|danRer3|chr23 (15138344-15138168) | |
| 180-327, gnl|dasNov1|scaffold_3367 (57989-58200) | |
| 180-327, gnl|echTel1|scaffold_296287 (3311-3114) | |
| 180-327, gnl|fr1|chrUn (190190842-190190654) | |
| 180-327, gnl|galGal2|chr20 (2488064-2487877) | |
| 180-327, gnl|hg17|chr20 (32997404-32997617) | |
| 180-327, gnl|Hg17|chr20 (32997566-32997417) | |
| 180-327, gnl|loxAfr1|scaffold_9094 (24757-24548) | |
| 180-327, gnl|mm7|chr2 (155322733-155322970) | |
| 180-327, gnl|Mm7|chr2 (155322893-155322746) | |
| 180-327, gnl|monDom2|scaffold_6 (12064939-12064758) | |
| 180-327, gnl|oryCun1|scaffold_207338 (43290-43081) | |
| 180-327, gnl|panTro1|chr21 (35005070-35005283) | |
| 180-327, gnl|rheMac2|chr10 (29614046-29613834) | |
| 180-327, gnl|rn3|chr3 (145982601-145982804) | |
| 180-327, gnl|tetNig1|chrUn_random (97534113-97533933) | |
| 180-327, gnl|xenTro1|scaffold_35 (3231695-3231502) | |
| 399-543, gnl|bosTau2|chr13 (46604438-46604582) | |
| 399-543, gnl|canFam2|chr24 (26960152-26960330) | |
| 399-543, gnl|danRer3|chr23 (15141755-15141619) | |
| 399-543, gnl|dasNov1|scaffold_3367 (54845-55024) | |
| 399-543, gnl|echTel1|scaffold_296287 (6756-6577) | |
| 399-543, gnl|fr1|chrUn (190192009-190191846) | |
| 399-543, gnl|galGal2|chr20 (2489809-2489622) | |
| 399-543, gnl|hg17|chr20 (32993945-32994123) | |
| 399-543, gnl|Hg17|chr20 (32994096-32993952) | |
| 399-543, gnl|loxAfr1|scaffold_9094 (27441-27262) | |
| 399-543, gnl|mm7|chr2 (155319140-155319318) | |
| 399-543, gnl|Mm7|chr2 (155319291-155319147) | |
| 399-543, gnl|monDom2|scaffold_6 (12066362-12066181) | |
| 399-543, gnl|oryCun1|scaffold_207338 (46721-46544) | |
| 399-543, gnl|panTro1|chr21 (35001609-35001787) | |
| 399-543, gnl|rheMac2|chr10 (29617808-29617630) | |
| 399-543, gnl|rn3|chr3 (145978523-145978701) | |
| 399-543, gnl|tetNig1|chrUn_random (97534824-97534667) | |
| 399-543, gnl|xenTro1|scaffold_35 (3232331-3232167) | |
| 877-1082, gnl|bosTau2|chr13 (46613477-46613682) | |
| 877-1082, gnl|canFam2|chr24 (26949423-26949568) | |
| 877-1082, gnl|danRer3|chr23 (15147850-15147720) | |
| 877-1082, gnl|dasNov1|scaffold_3367 (39741-39889) | |
| 877-1082, gnl|echTel1|scaffold_309010 (131512-131663) | |
| 877-1082, gnl|fr1|chrUn (190193883-190193753) | |
| 877-1082, gnl|galGal2|chr20 (2493355-2493219) | |
| 877-1082, gnl|hg17|chr20 (32983386-32983531) | |
| 877-1082, gnl|Hg17|chr20 (32983607-32983402) | |
| 877-1082, gnl|mm7|chr2 (155308540-155308679) | |
| 877-1082, gnl|Mm7|chr2 (155308756-155308550) | |
| 877-1082, gnl|monDom2|scaffold_6 (12074320-12074171) | |
| 877-1082, gnl|oryCun1|scaffold_206978 (45405-45261) | |
| 877-1082, gnl|rheMac2|chr10 (29627770-29627625) | |
| 877-1082, gnl|rn3|chr3 (145967871-145968010) | |
| 877-1082, gnl|tetNig1|chrUn_random (97535761-97535631) | |
| 877-1082, gnl|xenTro1|scaffold_5512 (597-450) | |
| 1352-1631, gnl|bosTau2|chr13 (46616820-46617095) | |
| 1352-1631, gnl|Hg17|chr20 (32980417-32980176) | |
| 1352-1631, gnl|Mm7|chr2 (155304579-155304301) |
| Aligned organism(s): 73 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 47-177, gnl|bosTau2|chr13 (46594785-46594915) | |
| 47-177, gnl|canFam2|chr24 (26968733-26968844) | |
| 47-177, gnl|dasNov1|scaffold_108901 (2206-2094) | |
| 47-177, gnl|echTel1|scaffold_309010 (152904-153016) | |
| 47-177, gnl|hg17|chr20 (33003168-33003279) | |
| 47-177, gnl|Hg17|chr20 (33003324-33003192) | |
| 47-177, gnl|loxAfr1|scaffold_9094 (18187-18075) | |
| 47-177, gnl|mm7|chr2 (155328295-155328391) | |
| 47-177, gnl|Mm7|chr2 (155328434-155328304) | |
| 47-177, gnl|monDom2|scaffold_6 (12059755-12059642) | |
| 47-177, gnl|panTro1|chr21 (35010855-35010966) | |
| 47-177, gnl|rheMac2|chr10 (29607992-29607881) | |
| 47-177, gnl|rn3|chr3 (145988464-145988560) | |
| 47-177, gnl|tetNig1|chrUn_random (97533501-97533378) | |
| 47-177, gnl|xenTro1|scaffold_35 (3230976-3230878) | |
| 180-327, gnl|bosTau2|chr13 (46600869-46601016) | |
| 180-327, gnl|canFam2|chr24 (26963316-26963526) | |
| 180-327, gnl|danRer3|chr23 (15138344-15138168) | |
| 180-327, gnl|dasNov1|scaffold_3367 (57989-58200) | |
| 180-327, gnl|echTel1|scaffold_296287 (3311-3114) | |
| 180-327, gnl|fr1|chrUn (190190842-190190654) | |
| 180-327, gnl|galGal2|chr20 (2488064-2487877) | |
| 180-327, gnl|hg17|chr20 (32997404-32997617) | |
| 180-327, gnl|Hg17|chr20 (32997566-32997417) | |
| 180-327, gnl|loxAfr1|scaffold_9094 (24757-24548) | |
| 180-327, gnl|mm7|chr2 (155322733-155322970) | |
| 180-327, gnl|Mm7|chr2 (155322893-155322746) | |
| 180-327, gnl|monDom2|scaffold_6 (12064939-12064758) | |
| 180-327, gnl|oryCun1|scaffold_207338 (43290-43081) | |
| 180-327, gnl|panTro1|chr21 (35005070-35005283) | |
| 180-327, gnl|rheMac2|chr10 (29614046-29613834) | |
| 180-327, gnl|rn3|chr3 (145982601-145982804) | |
| 180-327, gnl|tetNig1|chrUn_random (97534113-97533933) | |
| 180-327, gnl|xenTro1|scaffold_35 (3231695-3231502) | |
| 399-543, gnl|bosTau2|chr13 (46604438-46604582) | |
| 399-543, gnl|canFam2|chr24 (26960152-26960330) | |
| 399-543, gnl|danRer3|chr23 (15141755-15141619) | |
| 399-543, gnl|dasNov1|scaffold_3367 (54845-55024) | |
| 399-543, gnl|echTel1|scaffold_296287 (6756-6577) | |
| 399-543, gnl|fr1|chrUn (190192009-190191846) | |
| 399-543, gnl|galGal2|chr20 (2489809-2489622) | |
| 399-543, gnl|hg17|chr20 (32993945-32994123) | |
| 399-543, gnl|Hg17|chr20 (32994096-32993952) | |
| 399-543, gnl|loxAfr1|scaffold_9094 (27441-27262) | |
| 399-543, gnl|mm7|chr2 (155319140-155319318) | |
| 399-543, gnl|Mm7|chr2 (155319291-155319147) | |
| 399-543, gnl|monDom2|scaffold_6 (12066362-12066181) | |
| 399-543, gnl|oryCun1|scaffold_207338 (46721-46544) | |
| 399-543, gnl|panTro1|chr21 (35001609-35001787) | |
| 399-543, gnl|rheMac2|chr10 (29617808-29617630) | |
| 399-543, gnl|rn3|chr3 (145978523-145978701) | |
| 399-543, gnl|tetNig1|chrUn_random (97534824-97534667) | |
| 399-543, gnl|xenTro1|scaffold_35 (3232331-3232167) | |
| 877-1082, gnl|bosTau2|chr13 (46613477-46613682) | |
| 877-1082, gnl|canFam2|chr24 (26949423-26949568) | |
| 877-1082, gnl|danRer3|chr23 (15147850-15147720) | |
| 877-1082, gnl|dasNov1|scaffold_3367 (39741-39889) | |
| 877-1082, gnl|echTel1|scaffold_309010 (131512-131663) | |
| 877-1082, gnl|fr1|chrUn (190193883-190193753) | |
| 877-1082, gnl|galGal2|chr20 (2493355-2493219) | |
| 877-1082, gnl|hg17|chr20 (32983386-32983531) | |
| 877-1082, gnl|Hg17|chr20 (32983607-32983402) | |
| 877-1082, gnl|mm7|chr2 (155308540-155308679) | |
| 877-1082, gnl|Mm7|chr2 (155308756-155308550) | |
| 877-1082, gnl|monDom2|scaffold_6 (12074320-12074171) | |
| 877-1082, gnl|oryCun1|scaffold_206978 (45405-45261) | |
| 877-1082, gnl|rheMac2|chr10 (29627770-29627625) | |
| 877-1082, gnl|rn3|chr3 (145967871-145968010) | |
| 877-1082, gnl|tetNig1|chrUn_random (97535761-97535631) | |
| 877-1082, gnl|xenTro1|scaffold_5512 (597-450) | |
| 1352-1631, gnl|bosTau2|chr13 (46616820-46617095) | |
| 1352-1631, gnl|Hg17|chr20 (32980417-32980176) | |
| 1352-1631, gnl|Mm7|chr2 (155304579-155304301) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| eru (0.240096) | |
| ece (0.229305) | |
| nms (0.213858) | |
| fli (0.202881) | |
| duo (0.172801) | |
| pla (0.133672) | |
| cov (0.132153) | |
| ese (0.126502) | |
| clu (0.119646) | |
| jca (0.11396) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eru (0.240096) | |
| ece (0.229305) | |
| nms (0.213858) | |
| fli (0.202881) | |
| duo (0.172801) | |
| pla (0.133672) | |
| cov (0.132153) | |
| ese (0.126502) | |
| clu (0.119646) | |
| jca (0.11396) |