Ss1.1-Pig4-TMW8055E13.3
Sequence: | Distiller database | More info |
Sequence: | Distiller database | Help | Less info |
GGATGGCGGCGCGGTGCTCCCCACGCTTGTTGCTGGTGGCTGTGGGGACCCCGTGGCTGC CGACTGCAGCGAGGAGAGGGGCCCGGCCGCCCTTGGGGGGTGCGGTGGGGGCGTCGCTCG GGCGGAATCTGAGCGTCACCGCTTTCGCGTCTTCGCTCGGAGCTCGCGGTGCCCGGGCGC TGCTGACATTGAGACCCGGTGTCAGCCTCACAGGAGTAAAAAGTTCCCCTTCTGTTTGTA CTGCCTTCTTTCACACGAGCGCCACTTTGTCCAAAGAGGATTATTACCAGATATTAGGAG TACCCCGAAGTGCCAGCCAGAAGGAGATCAAGAAGGCCTATTACCAGCTTGCCAAGAAGT ATCACCCAGACACGAATAAGGATGACCCCAAAGCCAAGGAGAAGTTCTCCCAGCTGGCCG AGGCCTACGAGGTCCTGAGTGACGAAGTGAAGAGGAAGCAGTATGACACGTACGGCTCTG CCGGCTTCGATGCCGGGGCGGGCGGCTCGGGACAGGGCTACTGGAAGGGAGGCCCCACCG TGGACCCAGAGGAGCTCTTCAGGAAGATCTTCGGGGAGTTCTCCTCCTCCCCTTTTGGAG ATTTCCAGGGTGTGTTCAATCAGCCTCAGGAGTACATCATGGAGCTGACCTTCAATCAAG CCGCCAAGGGCGTCAACAAGGAGTTCACGGTGAACATGACTGACACCTGTGAGCGGTGCG ATGGCAAAGGCAACGAGCCCGGCACAAAGCTGCAGCACTGCCACTACTGTGGCGGCTCCG GCATGGAAACCATAAACACGGGCCCTTTTGTGATGCGCTCCACGTGTCGGAGGTGCGGGG GCCGCGGCTCCATCATCACATCCCCCTGCGTGGTGTGCAGGGGCACAGGACAAGCCAAGC AGAAAAAGAAAGTGATGATCCCTGTGCCTGCCGGAGTCGAGGATGGCCAGACTGTGAGGA TGCCTGTAGGAAAAAGAGAAATTTTCATCACATTCAGGGTGCAGAAAAGCCCCGTGTTCC GGAGGGACGGCGCCGACATCCACTCCGACCTCTTTATCTCCATAGCACAGGCGCTTCTCG GGGGCACGGCCAGGGCCCAGGGCCTGTACGAGACAATCAACGTGACGATCCCCGCTGGGA TTCAGACAGACCAGAAGATTCGGTTGAGTGGGAAAGGCATCCCCCGGATCAACAGCTATG GCTATGGCGACCACTACATTCACGTCAAGATCCGAGTTCCCAGGAGACTGACGAGCCGGC AGCAGAGCCTGATCCTGAGCTATGCCGAGGACGAGACCGACGTGGAGGGAACGGTGAACG GCGTCACGAACACGAGCACTGGAAAACGGTCCACTGGAAACTAGGCCACAGGCAGCAGCC CCTCCTCGTGGCCAGGGCACCTCGGAGGATCCCACACAGCAGCACGGGGCCCGCCTGCAG AGGCCTCCGGACAGCCTGGCAACAGCCAAACCATGTGACAACTCACGTCTCCACGGAAGG CCCTGTGGACGGCCCCTGGGCAGTCGGCACTGCGTGCCTAAGGGCCGGTGGTTTCCTGTC CACGGGTAGGTACACATGGCCTTGCCTGGCTCAGGCAGAGTCGGACAGCTGGACCCTCCT TGCAGAGCTAAGACTCTCATTGAATCGAATGTGGTGGAGATCTTAGTTAACGAATTAAAG GCCATGCTTACAGCTTAAAAACGAAGCCTTAAGCTGCACTGACTTGTGAAGTGATTGATT TCTCTCTCAGCAAAGCTCCGGGAGGTTCCAGAGTGAGTCTTTCCTGATCAGGTGTCTTTT CCAGGAACCTGGGGCCTGCACGCCCCGCTGGTGTCGTCCCCCCTCAGCAGGGGTGTCCCC TGGCCCTTCTTGGAGTCTGTTTTGATTCCCAAAGGTACCAAGTGGCCGGAACCTGGGGGC CTTGGGGGCCCGAGTGACATGGATGAAGAGGGTCCCTGGCTATGGCCCTCTTGACCACGT GGGCCGCGATCCCTGGATCCCTGTCAGGCCGCTTGCCCCTGACGTTGAGGTCTGTTCTAA GCCGGGCGTGAGCAGCGCTCCGGCCCCTCTGCTGGACCACAGGCGGCCGTGGCCGGGGGC CGACTAACGGCCTTTGCTCCAAGCCCTGCCCGCTGCCTGCCGGGGCCTGGGTCTCCCCCC TCACACTATTGACCTCTGTTTTCAGAAGTGTGTTTAAATTATTCAGTGCTAAGAATCATA GTCTTTTCCTTTATAAATGTTCGTTCAGAAAAGGAAAGCAGCAGCCCTCCAGCCAGAGCG ACCCTGCTCCCCAGCCTCTGCCTGTAGGCAGGGTGGGTCCCATTGTGTTTCCAGACACCC CGCTGTGCTGAGACAGGTTACTGGAGAGCCAGTCTGGATAGCTTCCTTCTTGTTTTCCTT CATAATTTACTACAATAAAGCATCTACTAGCATCTAATCTAAGAATGTAAAATGATTCTG TATCAATGTAAATAAGATTATCTATTGCAGAAATAT |
Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
GGATGGCGGCGCGGTGCTCCCCACGCTTGTTGCTGGTGGCTGTGGGGACCCCGTGGCTGC CGACTGCAGCGAGGAGAGGGGCCCGGCCGCCCTTGGGGGGTGCGGTGGGGGCGTCGCTCG GGCGGAATCTGAGCGTCACCGCTTTCGCGTCTTCGCTCGGAGCTCGCGGTGCCCGGGCGC TGCTGACATTGAGACCCGGTGTCAGCCTCACAGGAGTAAAAAGTTCCCCTTCTGTTTGTA CTGCCTTCTTTCACACGAGCGCCACTTTGTCCAAAGAGGATTATTACCAGATATTAGGAG TACCCCGAAGTGCCAGCCAGAAGGAGATCAAGAAGGCCTATTACCAGCTTGCCAAGAAGT ATCACCCAGACACGAATAAGGATGACCCCAAAGCCAAGGAGAAGTTCTCCCAGCTGGCCG AGGCCTACGAGGTCCTGAGTGACGAAGTGAAGAGGAAGCAGTATGACACGTACGGCTCTG CCGGCTTCGATGCCGGGGCGGGCGGCTCGGGACAGGGCTACTGGAAGGGAGGCCCCACCG TGGACCCAGAGGAGCTCTTCAGGAAGATCTTCGGGGAGTTCTCCTCCTCCCCTTTTGGAG ATTTCCAGGGTGTGTTCAATCAGCCTCAGGAGTACATCATGGAGCTGACCTTCAATCAAG CCGCCAAGGGCGTCAACAAGGAGTTCACGGTGAACATGACTGACACCTGTGAGCGGTGCG ATGGCAAAGGCAACGAGCCCGGCACAAAGCTGCAGCACTGCCACTACTGTGGCGGCTCCG GCATGGAAACCATAAACACGGGCCCTTTTGTGATGCGCTCCACGTGTCGGAGGTGCGGGG GCCGCGGCTCCATCATCACATCCCCCTGCGTGGTGTGCAGGGGCACAGGACAAGCCAAGC AGAAAAAGAAAGTGATGATCCCTGTGCCTGCCGGAGTCGAGGATGGCCAGACTGTGAGGA TGCCTGTAGGAAAAAGAGAAATTTTCATCACATTCAGGGTGCAGAAAAGCCCCGTGTTCC GGAGGGACGGCGCCGACATCCACTCCGACCTCTTTATCTCCATAGCACAGGCGCTTCTCG GGGGCACGGCCAGGGCCCAGGGCCTGTACGAGACAATCAACGTGACGATCCCCGCTGGGA TTCAGACAGACCAGAAGATTCGGTTGAGTGGGAAAGGCATCCCCCGGATCAACAGCTATG GCTATGGCGACCACTACATTCACGTCAAGATCCGAGTTCCCAGGAGACTGACGAGCCGGC AGCAGAGCCTGATCCTGAGCTATGCCGAGGACGAGACCGACGTGGAGGGAACGGTGAACG GCGTCACGAACACGAGCACTGGAAAACGGTCCACTGGAAACTAGGCCACAGGCAGCAGCC CCTCCTCGTGGCCAGGGCACCTCGGAGGATCCCACACAGCAGCACGGGGCCCGCCTGCAG AGGCCTCCGGACAGCCTGGCAACAGCCAAACCATGTGACAACTCACGTCTCCACGGAAGG CCCTGTGGACGGCCCCTGGGCAGTCGGCACTGCGTGCCTAAGGGCCGGTGGTTTCCTGTC CACGGGTAGGTACACATGGCCTTGCCTGGCTCAGGCAGAGTCGGACAGCTGGACCCTCCT TGCAGAGCTAAGACTCTCATTGAATCGAATGTGGTGGAGATCTTAGTTAACGAATTAAAG GCCATGCTTACAGCTTAAAAACGAAGCCTTAAGCTGCACTGACTTGTGAAGTGATTGATT TCTCTCTCAGCAAAGCTCCGGGAGGTTCCAGAGTGAGTCTTTCCTGATCAGGTGTCTTTT CCAGGAACCTGGGGCCTGCACGCCCCGCTGGTGTCGTCCCCCCTCAGCAGGGGTGTCCCC TGGCCCTTCTTGGAGTCTGTTTTGATTCCCAAAGGTACCAAGTGGCCGGAACCTGGGGGC CTTGGGGGCCCGAGTGACATGGATGAAGAGGGTCCCTGGCTATGGCCCTCTTGACCACGT GGGCCGCGATCCCTGGATCCCTGTCAGGCCGCTTGCCCCTGACGTTGAGGTCTGTTCTAA GCCGGGCGTGAGCAGCGCTCCGGCCCCTCTGCTGGACCACAGGCGGCCGTGGCCGGGGGC CGACTAACGGCCTTTGCTCCAAGCCCTGCCCGCTGCCTGCCGGGGCCTGGGTCTCCCCCC TCACACTATTGACCTCTGTTTTCAGAAGTGTGTTTAAATTATTCAGTGCTAAGAATCATA GTCTTTTCCTTTATAAATGTTCGTTCAGAAAAGGAAAGCAGCAGCCCTCCAGCCAGAGCG ACCCTGCTCCCCAGCCTCTGCCTGTAGGCAGGGTGGGTCCCATTGTGTTTCCAGACACCC CGCTGTGCTGAGACAGGTTACTGGAGAGCCAGTCTGGATAGCTTCCTTCTTGTTTTCCTT CATAATTTACTACAATAAAGCATCTACTAGCATCTAATCTAAGAATGTAAAATGATTCTG TATCAATGTAAATAAGATTATCTATTGCAGAAATAT |
Coded protein: 1 entry(ies) | More info |
Aligned organism(s): 77 entry(ies) | More info |
Aligned organism(s): 77 entry(ies) | Help | Less info |
2-214, gnl|bosTau2|chr25 (4361402-4361614) | |
2-214, gnl|canFam2|chr6 (40009513-40008706) | |
2-214, gnl|dasNov1|scaffold_48811 (582-1449) | |
2-214, gnl|echTel1|scaffold_317230 (46778-45999) | |
2-214, gnl|hg17|chr16 (4415878-4416684) | |
2-214, gnl|Hg17|chr16 (4415883-4416095) | |
2-214, gnl|mm7|chr16 (4355901-4356623) | |
2-214, gnl|Mm7|chr16 (4355906-4356118) | |
2-214, gnl|monDom2|scaffold_49 (4325867-4324965) | |
2-214, gnl|oryCun1|scaffold_208787 (4732-5428) | |
2-214, gnl|panTro1|chr18 (4350664-4351466) | |
2-214, gnl|rheMac2|chr20 (4580876-4581680) | |
2-214, gnl|rn3|chr10 (11009382-11008664) | |
430-632, gnl|bosTau2|chr25 (4376153-4376355) | |
430-632, gnl|canFam2|chr6 (39997194-39996987) | |
430-632, gnl|danRer3|chr22 (27727887-27728094) | |
430-632, gnl|dasNov1|scaffold_29 (145266-145056) | |
430-632, gnl|echTel1|scaffold_288199 (30111-29904) | |
430-632, gnl|fr1|chrUn (108232466-108232256) | |
430-632, gnl|galGal2|chr14 (14559592-14559805) | |
430-632, gnl|hg17|chr16 (4431376-4431583) | |
430-632, gnl|Hg17|chr16 (4431375-4431577) | |
430-632, gnl|loxAfr1|scaffold_35840 (13669-13876) | |
430-632, gnl|mm7|chr16 (4364920-4365126) | |
430-632, gnl|Mm7|chr16 (4364919-4365121) | |
430-632, gnl|monDom2|scaffold_49 (4311822-4311615) | |
430-632, gnl|oryCun1|scaffold_169503 (11275-11474) | |
430-632, gnl|panTro1|chr18 (4366870-4367077) | |
430-632, gnl|rn3|chr10 (10999923-10999716) | |
430-632, gnl|tetNig1|chr3 (9860096-9860309) | |
430-632, gnl|xenTro1|scaffold_12 (2384171-2383961) | |
998-1127, gnl|bosTau2|chr25 (4385464-4385593) | |
998-1127, gnl|canFam2|chr6 (39985040-39984886) | |
998-1127, gnl|danRer3|chr22 (27733681-27733833) | |
998-1127, gnl|dasNov1|scaffold_34690 (4478-4335) | |
998-1127, gnl|fr1|chrUn (108231499-108231351) | |
998-1127, gnl|galGal2|chr14 (14564275-14564412) | |
998-1127, gnl|hg17|chr16 (4436868-4437022) | |
998-1127, gnl|Hg17|chr16 (4436887-4437016) | |
998-1127, gnl|loxAfr1|scaffold_29021 (11421-11267) | |
998-1127, gnl|mm7|chr16 (4371436-4371592) | |
998-1127, gnl|Mm7|chr16 (4371457-4371586) | |
998-1127, gnl|monDom2|scaffold_49 (4298903-4298746) | |
998-1127, gnl|oryCun1|scaffold_169503 (11832-11958) | |
998-1127, gnl|panTro1|chr18 (4372486-4372640) | |
998-1127, gnl|rheMac2|chr20 (4603240-4603394) | |
998-1127, gnl|rn3|chr10 (10992384-10992228) | |
998-1127, gnl|tetNig1|chr3 (9860973-9861125) | |
998-1127, gnl|xenTro1|scaffold_12 (2382367-2382219) | |
1336-1854, gnl|bosTau2|chr25 (4391514-4392037) | |
1336-1854, gnl|canFam2|chr6 (39976298-39975953) | |
1336-1854, gnl|dasNov1|scaffold_70543 (1996-1641) | |
1336-1854, gnl|echTel1|scaffold_313279 (84263-84016) | |
1336-1854, gnl|hg17|chr16 (4445506-4445849) | |
1336-1854, gnl|Hg17|chr16 (4445542-4446087) | |
1336-1854, gnl|loxAfr1|scaffold_29021 (2761-2452) | |
1336-1854, gnl|mm7|chr16 (4378240-4378583) | |
1336-1854, gnl|Mm7|chr16 (4378271-4378823) | |
1336-1854, gnl|monDom2|scaffold_49 (4286676-4286287) | |
1336-1854, gnl|oryCun1|scaffold_208787 (42996-43343) | |
1336-1854, gnl|panTro1|chr18 (4324620-4324956) | |
1336-1854, gnl|rheMac2|chr20 (4612990-4613333) | |
1336-1854, gnl|rn3|chr10 (10985120-10984780) | |
2259-2496, gnl|bosTau2|chr25 (4392446-4392682) | |
2259-2496, gnl|canFam2|chr6 (39975620-39975127) | |
2259-2496, gnl|dasNov1|scaffold_70543 (1278-800) | |
2259-2496, gnl|echTel1|scaffold_313279 (83712-83288) | |
2259-2496, gnl|hg17|chr16 (4446183-4446670) | |
2259-2496, gnl|Hg17|chr16 (4446526-4446763) | |
2259-2496, gnl|loxAfr1|scaffold_29021 (2089-1645) | |
2259-2496, gnl|mm7|chr16 (4378889-4379298) | |
2259-2496, gnl|Mm7|chr16 (4379169-4379390) | |
2259-2496, gnl|monDom2|scaffold_49 (4285877-4285369) | |
2259-2496, gnl|oryCun1|scaffold_208787 (43675-44097) | |
2259-2496, gnl|panTro1|chr18 (4325299-4325786) | |
2259-2496, gnl|rheMac2|chr20 (4613668-4614159) | |
2259-2496, gnl|rn3|chr10 (10984446-10984034) |
Aligned organism(s): 77 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
2-214, gnl|bosTau2|chr25 (4361402-4361614) | |
2-214, gnl|canFam2|chr6 (40009513-40008706) | |
2-214, gnl|dasNov1|scaffold_48811 (582-1449) | |
2-214, gnl|echTel1|scaffold_317230 (46778-45999) | |
2-214, gnl|hg17|chr16 (4415878-4416684) | |
2-214, gnl|Hg17|chr16 (4415883-4416095) | |
2-214, gnl|mm7|chr16 (4355901-4356623) | |
2-214, gnl|Mm7|chr16 (4355906-4356118) | |
2-214, gnl|monDom2|scaffold_49 (4325867-4324965) | |
2-214, gnl|oryCun1|scaffold_208787 (4732-5428) | |
2-214, gnl|panTro1|chr18 (4350664-4351466) | |
2-214, gnl|rheMac2|chr20 (4580876-4581680) | |
2-214, gnl|rn3|chr10 (11009382-11008664) | |
430-632, gnl|bosTau2|chr25 (4376153-4376355) | |
430-632, gnl|canFam2|chr6 (39997194-39996987) | |
430-632, gnl|danRer3|chr22 (27727887-27728094) | |
430-632, gnl|dasNov1|scaffold_29 (145266-145056) | |
430-632, gnl|echTel1|scaffold_288199 (30111-29904) | |
430-632, gnl|fr1|chrUn (108232466-108232256) | |
430-632, gnl|galGal2|chr14 (14559592-14559805) | |
430-632, gnl|hg17|chr16 (4431376-4431583) | |
430-632, gnl|Hg17|chr16 (4431375-4431577) | |
430-632, gnl|loxAfr1|scaffold_35840 (13669-13876) | |
430-632, gnl|mm7|chr16 (4364920-4365126) | |
430-632, gnl|Mm7|chr16 (4364919-4365121) | |
430-632, gnl|monDom2|scaffold_49 (4311822-4311615) | |
430-632, gnl|oryCun1|scaffold_169503 (11275-11474) | |
430-632, gnl|panTro1|chr18 (4366870-4367077) | |
430-632, gnl|rn3|chr10 (10999923-10999716) | |
430-632, gnl|tetNig1|chr3 (9860096-9860309) | |
430-632, gnl|xenTro1|scaffold_12 (2384171-2383961) | |
998-1127, gnl|bosTau2|chr25 (4385464-4385593) | |
998-1127, gnl|canFam2|chr6 (39985040-39984886) | |
998-1127, gnl|danRer3|chr22 (27733681-27733833) | |
998-1127, gnl|dasNov1|scaffold_34690 (4478-4335) | |
998-1127, gnl|fr1|chrUn (108231499-108231351) | |
998-1127, gnl|galGal2|chr14 (14564275-14564412) | |
998-1127, gnl|hg17|chr16 (4436868-4437022) | |
998-1127, gnl|Hg17|chr16 (4436887-4437016) | |
998-1127, gnl|loxAfr1|scaffold_29021 (11421-11267) | |
998-1127, gnl|mm7|chr16 (4371436-4371592) | |
998-1127, gnl|Mm7|chr16 (4371457-4371586) | |
998-1127, gnl|monDom2|scaffold_49 (4298903-4298746) | |
998-1127, gnl|oryCun1|scaffold_169503 (11832-11958) | |
998-1127, gnl|panTro1|chr18 (4372486-4372640) | |
998-1127, gnl|rheMac2|chr20 (4603240-4603394) | |
998-1127, gnl|rn3|chr10 (10992384-10992228) | |
998-1127, gnl|tetNig1|chr3 (9860973-9861125) | |
998-1127, gnl|xenTro1|scaffold_12 (2382367-2382219) | |
1336-1854, gnl|bosTau2|chr25 (4391514-4392037) | |
1336-1854, gnl|canFam2|chr6 (39976298-39975953) | |
1336-1854, gnl|dasNov1|scaffold_70543 (1996-1641) | |
1336-1854, gnl|echTel1|scaffold_313279 (84263-84016) | |
1336-1854, gnl|hg17|chr16 (4445506-4445849) | |
1336-1854, gnl|Hg17|chr16 (4445542-4446087) | |
1336-1854, gnl|loxAfr1|scaffold_29021 (2761-2452) | |
1336-1854, gnl|mm7|chr16 (4378240-4378583) | |
1336-1854, gnl|Mm7|chr16 (4378271-4378823) | |
1336-1854, gnl|monDom2|scaffold_49 (4286676-4286287) | |
1336-1854, gnl|oryCun1|scaffold_208787 (42996-43343) | |
1336-1854, gnl|panTro1|chr18 (4324620-4324956) | |
1336-1854, gnl|rheMac2|chr20 (4612990-4613333) | |
1336-1854, gnl|rn3|chr10 (10985120-10984780) | |
2259-2496, gnl|bosTau2|chr25 (4392446-4392682) | |
2259-2496, gnl|canFam2|chr6 (39975620-39975127) | |
2259-2496, gnl|dasNov1|scaffold_70543 (1278-800) | |
2259-2496, gnl|echTel1|scaffold_313279 (83712-83288) | |
2259-2496, gnl|hg17|chr16 (4446183-4446670) | |
2259-2496, gnl|Hg17|chr16 (4446526-4446763) | |
2259-2496, gnl|loxAfr1|scaffold_29021 (2089-1645) | |
2259-2496, gnl|mm7|chr16 (4378889-4379298) | |
2259-2496, gnl|Mm7|chr16 (4379169-4379390) | |
2259-2496, gnl|monDom2|scaffold_49 (4285877-4285369) | |
2259-2496, gnl|oryCun1|scaffold_208787 (43675-44097) | |
2259-2496, gnl|panTro1|chr18 (4325299-4325786) | |
2259-2496, gnl|rheMac2|chr20 (4613668-4614159) | |
2259-2496, gnl|rn3|chr10 (10984446-10984034) |
Expressed library(ies): 10 entry(ies) | More info |
Expressed library(ies): 10 entry(ies) | Help | Less info |
cag (0.302389) | |
mas (0.210305) | |
fli (0.202881) | |
fcc (0.197785) | |
eje (0.197668) | |
nje (0.16592) | |
cli (0.152812) | |
nca (0.136874) | |
ebs (0.118301) | |
jca (0.11396) |
Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
cag (0.302389) | |
mas (0.210305) | |
fli (0.202881) | |
fcc (0.197785) | |
eje (0.197668) | |
nje (0.16592) | |
cli (0.152812) | |
nca (0.136874) | |
ebs (0.118301) | |
jca (0.11396) |