Non-Coding RNA Search

Ss1.1-Pig4-TMW8055E18.5

Sequence:


               
               GTAATTGAGTGGTGTCCTCCGGAGTTCCGGGGGGAGGAAAAGACCCTCCGTTTTAATTTT
GAGTGGCCTGGGCTATAGGGAGTGCTTGGGACGTACTATCTCGCGAGGCAGAAAAACAAG
GGAGTGGGGAGTGCGATTAAGAAAAAAGGTATTCTCGCTTCCTTCCAGGGTTCCTAAAGG
ATATGTAAGAACCGAGAGAGGTGAAAACTTCTCGCGATATCTGAGGACATCCGGCGACCT
AGACCTCAGCGAGCCGTTCGCCGAAGCAGGAGACGCTCGCGAGATCTCTGCAGTTGCCGA
GGAGACGAGGAGGGGAGGTGATCTCGCGAAAGAAAACAGGTCGGGAGCGCTCGCGAGATC
TCAGACCCCCCGGAGCCGAAAGGTTCTCAGCAAGTTGAAGGGCCTGGAGGAGGCCCGCGG
ACAAATGGCCGGAGCTGGACCAACTATGCTGCTACGAGAGGAGAATGGCTGTTGCAGCCG
GCGTCAAAGCAGCTCCAGCGCCGGGGACTCAGACGGGGAGCGCGAAGACTCGCCGTCTGC
GCGCGCTAGGCAGCAGCTGGAGGCGCTGCTCAACAAGACTATGCGGATTCGCATGACAGA
TGGACGGACACTGGTCGGTTGCTTCCTCTGCACCGACCGCGACTGCAATGTTATCCTAGG
CTCGGCGCAGGAGTTCCTCAAGCCGTCGGATTCCTTCTCTGCCGGGGAACCCCGTGTGCT
GGGCCTAGCTATGGTACCTGGACACCACATCGTTTCTATTGAGGTGCAAAGAGAGAGCCT
GGCGGGGCCTCCCTATCTCTGAGCCCGACCGCGCATGCCTTTCAAACTTCATTAAACCTG
TCACTGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTAATTGAGTGGTGTCCTCCGGAGTTCCGGGGGGAGGAAAAGACCCTCCGTTTTAATTTT
GAGTGGCCTGGGCTATAGGGAGTGCTTGGGACGTACTATCTCGCGAGGCAGAAAAACAAG
GGAGTGGGGAGTGCGATTAAGAAAAAAGGTATTCTCGCTTCCTTCCAGGGTTCCTAAAGG
ATATGTAAGAACCGAGAGAGGTGAAAACTTCTCGCGATATCTGAGGACATCCGGCGACCT
AGACCTCAGCGAGCCGTTCGCCGAAGCAGGAGACGCTCGCGAGATCTCTGCAGTTGCCGA
GGAGACGAGGAGGGGAGGTGATCTCGCGAAAGAAAACAGGTCGGGAGCGCTCGCGAGATC
TCAGACCCCCCGGAGCCGAAAGGTTCTCAGCAAGTTGAAGGGCCTGGAGGAGGCCCGCGG
ACAAATGGCCGGAGCTGGACCAACTATGCTGCTACGAGAGGAGAATGGCTGTTGCAGCCG
GCGTCAAAGCAGCTCCAGCGCCGGGGACTCAGACGGGGAGCGCGAAGACTCGCCGTCTGC
GCGCGCTAGGCAGCAGCTGGAGGCGCTGCTCAACAAGACTATGCGGATTCGCATGACAGA
TGGACGGACACTGGTCGGTTGCTTCCTCTGCACCGACCGCGACTGCAATGTTATCCTAGG
CTCGGCGCAGGAGTTCCTCAAGCCGTCGGATTCCTTCTCTGCCGGGGAACCCCGTGTGCT
GGGCCTAGCTATGGTACCTGGACACCACATCGTTTCTATTGAGGTGCAAAGAGAGAGCCT
GGCGGGGCCTCCCTATCTCTGAGCCCGACCGCGCATGCCTTTCAAACTTCATTAAACCTG
TCACTGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9BRA0_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9BRA0_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               187-506, + strand, RNAz p=0.98586

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               187-506, + strand, RNAz p=0.98586

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC051846, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC051846, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               8-506, gnl|bosTau2|chr19 (15375525-15376015)
               

               
               8-506, gnl|Hg17|chr17 (7701934-7701425)
               

               
               8-506, gnl|Mm7|chr11 (69477096-69477547)
               


               
               689-848, gnl|bosTau2|chr19 (15376553-15376712)
               

               
               689-848, gnl|Hg17|chr17 (7700887-7700728)
               

               
               689-848, gnl|Mm7|chr11 (69478093-69478251)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-506, gnl|bosTau2|chr19 (15375525-15376015)
               

               
               8-506, gnl|Hg17|chr17 (7701934-7701425)
               

               
               8-506, gnl|Mm7|chr11 (69477096-69477547)
               


               
               689-848, gnl|bosTau2|chr19 (15376553-15376712)
               

               
               689-848, gnl|Hg17|chr17 (7700887-7700728)
               

               
               689-848, gnl|Mm7|chr11 (69478093-69478251)

Expressed library(ies): 17 entry(ies)

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Expressed library(ies): 17 entry(ies)

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               sme (0.610874)
               

               
               hlv (0.417769)
               

               
               cki (0.330469)
               

               
               ebs (0.236602)
               

               
               jca (0.22792)
               

               
               fli (0.202881)
               

               
               eje (0.197668)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               cag (0.151194)
               

               
               cov (0.132153)
               

               
               cly (0.120642)
               

               
               med (0.116252)
               

               
               cbl (0.114797)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.610874)
               

               
               hlv (0.417769)
               

               
               cki (0.330469)
               

               
               ebs (0.236602)
               

               
               jca (0.22792)
               

               
               fli (0.202881)
               

               
               eje (0.197668)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               cag (0.151194)
               

               
               cov (0.132153)
               

               
               cly (0.120642)
               

               
               med (0.116252)
               

               
               cbl (0.114797)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)

	8-506, gnl\|bosTau2\|chr19 (15375525-15376015)
	8-506, gnl\|Hg17\|chr17 (7701934-7701425)
	8-506, gnl\|Mm7\|chr11 (69477096-69477547)

	689-848, gnl\|bosTau2\|chr19 (15376553-15376712)
	689-848, gnl\|Hg17\|chr17 (7700887-7700728)
	689-848, gnl\|Mm7\|chr11 (69478093-69478251)

	sme (0.610874)
	hlv (0.417769)
	cki (0.330469)
	ebs (0.236602)
	jca (0.22792)
	fli (0.202881)
	eje (0.197668)
	col (0.195008)
	nlu (0.191681)
	nep (0.183925)
	cag (0.151194)
	cov (0.132153)
	cly (0.120642)
	med (0.116252)
	cbl (0.114797)
	spc (0.113366)
	nbm (0.0993246)