Non-Coding RNA Search

Ss1.1-Pig4-TMW8055E21.5

Sequence:


               
               GGTGGCTATCACATATAGTGAGTTTCTTCTGGCCAGTAGCTCATGGAAGCTGAATGAACC
CTAGGCCCAGGTCTTCTGAAGACTTCAGGATGTAATTCTCCATCAAGTATGTAGCGCTGA
TGCAACTGCTCTGTACTGTTTGATCAATTTCAATAGGCTTAGAAAAGTTAGCAGGGGTGT
GTTCCCTGTCCCACTCACCAGTTTGCTGGCCTTGTAATAACGTGAGACCCTTTTGGTTAT
CGGTGTCAGATACCTTTTGATCTTAGGTTCTCTCTCCCTCTTGCTTTCCCAGGGCAGAAC
ACTGGGACATTTTCTAGAAGGGCGCTCCTTATAGGAAGCCCAGAGGGACTCTACTTAACT
CTATTGCTATTGTGGCTTGGGGACTGTCTCCCCCCTCCCCCCGCCCCTGCCACATGGCAC
CTAAGAGCAAAAGGTCATGTGGTCAGTGGGTGACTCCACAGAAGTGACCGCCTTTGCTAG
AAGCTCTCCCCAACAGAGTTTCTTGTTGACCAGCTGGCCAGAGGGCCTGCTTCCCATGGG
CATTGCAAGTGCGGGGCCTGGCTCTGCACACCCAGGAGAAGTCCGCAGACCCCAGCCCTC
CGCAATAATTCACCAGACCAGAAGCCACTGATGTACAGAGAACACTTAAGAAAAATGTAT
TTTATGTGAAAAAAAAAAAAGGTTAAAACTCTGTATACTGTATCAGCAGCTTTGTGTAAA
AATGGCAATCAAGAGAGTCTAATATATTTAAAACTTTTTTTAAAAAAAAAACCTCGCGGA
TCTTTGATATTGTATTGAAATAACTTCTGGGTAGCTCCTCGCCATGTGGCAGTGGTGGGC
CTTGGGTTTTTGAGACCGTGGCTCAACCACATGCCAAAGGGGCGTGCCCCTGGAGTTGCT
TCCAGCTGCCAAGGCCTGTGACAGAATTCGCTGTTAAGAGTTTTTAATTAAGATTATTAA
ATTCCTTTTAATAACAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTGGCTATCACATATAGTGAGTTTCTTCTGGCCAGTAGCTCATGGAAGCTGAATGAACC
CTAGGCCCAGGTCTTCTGAAGACTTCAGGATGTAATTCTCCATCAAGTATGTAGCGCTGA
TGCAACTGCTCTGTACTGTTTGATCAATTTCAATAGGCTTAGAAAAGTTAGCAGGGGTGT
GTTCCCTGTCCCACTCACCAGTTTGCTGGCCTTGTAATAACGTGAGACCCTTTTGGTTAT
CGGTGTCAGATACCTTTTGATCTTAGGTTCTCTCTCCCTCTTGCTTTCCCAGGGCAGAAC
ACTGGGACATTTTCTAGAAGGGCGCTCCTTATAGGAAGCCCAGAGGGACTCTACTTAACT
CTATTGCTATTGTGGCTTGGGGACTGTCTCCCCCCTCCCCCCGCCCCTGCCACATGGCAC
CTAAGAGCAAAAGGTCATGTGGTCAGTGGGTGACTCCACAGAAGTGACCGCCTTTGCTAG
AAGCTCTCCCCAACAGAGTTTCTTGTTGACCAGCTGGCCAGAGGGCCTGCTTCCCATGGG
CATTGCAAGTGCGGGGCCTGGCTCTGCACACCCAGGAGAAGTCCGCAGACCCCAGCCCTC
CGCAATAATTCACCAGACCAGAAGCCACTGATGTACAGAGAACACTTAAGAAAAATGTAT
TTTATGTGAAAAAAAAAAAAGGTTAAAACTCTGTATACTGTATCAGCAGCTTTGTGTAAA
AATGGCAATCAAGAGAGTCTAATATATTTAAAACTTTTTTTAAAAAAAAAACCTCGCGGA
TCTTTGATATTGTATTGAAATAACTTCTGGGTAGCTCCTCGCCATGTGGCAGTGGTGGGC
CTTGGGTTTTTGAGACCGTGGCTCAACCACATGCCAAAGGGGCGTGCCCCTGGAGTTGCT
TCCAGCTGCCAAGGCCTGTGACAGAATTCGCTGTTAAGAGTTTTTAATTAAGATTATTAA
ATTCCTTTTAATAACAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               246-361, - strand, RNAz p=0.987932
               

               
               476-734, - strand, RNAz p=0.969024

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               246-361, - strand, RNAz p=0.987932
               

               
               476-734, - strand, RNAz p=0.969024

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               702-808, - strand, RNAmicro p=0.99891

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               702-808, - strand, RNAmicro p=0.99891

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               26-976, gnl|bosTau2|chr20 (23175042-23175978)
               

               
               26-976, gnl|Hg17|chr20 (36984138-36985081)
               

               
               26-976, gnl|Mm7|chr2 (158506151-158507224)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               26-976, gnl|bosTau2|chr20 (23175042-23175978)
               

               
               26-976, gnl|Hg17|chr20 (36984138-36985081)
               

               
               26-976, gnl|Mm7|chr2 (158506151-158507224)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               fce (0.271592)
               

               
               spc (0.226732)
               

               
               fcc (0.197785)
               

               
               hyp (0.142837)
               

               
               bla (0.124347)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               spc (0.226732)
               

               
               fcc (0.197785)
               

               
               hyp (0.142837)
               

               
               bla (0.124347)

	246-361, - strand, RNAz p=0.987932
	476-734, - strand, RNAz p=0.969024

	26-976, gnl\|bosTau2\|chr20 (23175042-23175978)
	26-976, gnl\|Hg17\|chr20 (36984138-36985081)
	26-976, gnl\|Mm7\|chr2 (158506151-158507224)

	fce (0.271592)
	spc (0.226732)
	fcc (0.197785)
	hyp (0.142837)
	bla (0.124347)