Ss1.1-Pig4-TMW8055E22.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGAAGGATGGCGGCAGCGGCTGCGNCGGTGGGAGTGGGCGCGGGCGCCGGTGGCCCAGGA GCTGCAGGCGGCGGCAGCGGGGCGCGTGAGGGCGCGCGGGTGGCGGCGCTGTGCCTACTG TGGTATGCGCTGAGCGCGGGCGGCAATGTGGTCAACAAGGTGATCCTGAGTGCTTTTCCA TTCCCCGTGACCGTGTCGTTGTGCCACATCCTGGCGCTGTGCGCGGGGCTCCCGCCTCTG CTGCGCGCCTGGCGCGTGCCCCCCGCGCCGCCCGTCTCGGGCCCTGGGCCAGGCCCGCAT CCGTCGCCCGGCCCGCTGCTGCCGCCGCGCTTCTACCCGCGTTACGTGCTGCCGCTCGCT TTCGGCAAGTACTTCGCGTCAGTGTCCGCGCACGTCAGCATCTGGAAGGTGCCTGTGTCC TACGCGCACACCGTCAAGGCTACTATGCCCATCTGGGTGGTTCTCCTGTCCCGGATCATC ATGAAGGAGAAACAGAGCACCAAGGTGTACCTGTCACTCATCCCCATCATCAGCGGCGTC CTGCTGGCCACTGTCACCGAACTGTCCTTCGACATGTGGGGGCTTGTCAGCGCCCTTGCT GCCACACTGTGCTTCTCACTTCAGAATATTTTCTCCAAAAAGGTGTTAAGAGATTCAAGG ATCCACCATCTTCGGCTACTGAACATCTTGGGCTGCCATGCTGTCTTTTTTATGATCCCT ACGTGGGTCCTGGTGGACCTCTCAGCTTTCTTGGTCAGCAGTGACCTGGACTTAAATAAG ACCTACAGTCTTATAATATTCTGAGTGTCCAGGATATAATCCAGAATTACTTGGCATATG AAGAACCAGGAAAATTTCAAGTTTTGTGGAAAAAGACAATCAACAGATGCCAACACTGGA ATGACCCAGATGTTGGGATTATTGGACAGAGAATTTAAAGCAGTGATTTATAATCATGCT TCAAGAATGCCCTTGGGAATTCCCATCATGGCGCAGCAGAAATGAATCCAACTAGGAACC AAGAATAAAAAACTGAACACCTCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGAAGGATGGCGGCAGCGGCTGCGNCGGTGGGAGTGGGCGCGGGCGCCGGTGGCCCAGGA GCTGCAGGCGGCGGCAGCGGGGCGCGTGAGGGCGCGCGGGTGGCGGCGCTGTGCCTACTG TGGTATGCGCTGAGCGCGGGCGGCAATGTGGTCAACAAGGTGATCCTGAGTGCTTTTCCA TTCCCCGTGACCGTGTCGTTGTGCCACATCCTGGCGCTGTGCGCGGGGCTCCCGCCTCTG CTGCGCGCCTGGCGCGTGCCCCCCGCGCCGCCCGTCTCGGGCCCTGGGCCAGGCCCGCAT CCGTCGCCCGGCCCGCTGCTGCCGCCGCGCTTCTACCCGCGTTACGTGCTGCCGCTCGCT TTCGGCAAGTACTTCGCGTCAGTGTCCGCGCACGTCAGCATCTGGAAGGTGCCTGTGTCC TACGCGCACACCGTCAAGGCTACTATGCCCATCTGGGTGGTTCTCCTGTCCCGGATCATC ATGAAGGAGAAACAGAGCACCAAGGTGTACCTGTCACTCATCCCCATCATCAGCGGCGTC CTGCTGGCCACTGTCACCGAACTGTCCTTCGACATGTGGGGGCTTGTCAGCGCCCTTGCT GCCACACTGTGCTTCTCACTTCAGAATATTTTCTCCAAAAAGGTGTTAAGAGATTCAAGG ATCCACCATCTTCGGCTACTGAACATCTTGGGCTGCCATGCTGTCTTTTTTATGATCCCT ACGTGGGTCCTGGTGGACCTCTCAGCTTTCTTGGTCAGCAGTGACCTGGACTTAAATAAG ACCTACAGTCTTATAATATTCTGAGTGTCCAGGATATAATCCAGAATTACTTGGCATATG AAGAACCAGGAAAATTTCAAGTTTTGTGGAAAAAGACAATCAACAGATGCCAACACTGGA ATGACCCAGATGTTGGGATTATTGGACAGAGAATTTAAAGCAGTGATTTATAATCATGCT TCAAGAATGCCCTTGGGAATTCCCATCATGGCGCAGCAGAAATGAATCCAACTAGGAACC AAGAATAAAAAACTGAACACCTCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 862-980, - strand, RNAz p=0.984574 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 862-980, - strand, RNAz p=0.984574 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 1-433, gnl|bosTau2|chr7 (5829414-5828982) | |
| 1-433, gnl|Hg17|chr19 (16544181-16543755) | |
| 1-433, gnl|Mm7|chr8 (71015605-71015179) | |
| 503-644, gnl|bosTau2|chr7 (5826224-5826083) | |
| 503-644, gnl|canFam2|chr20 (48985210-48985347) | |
| 503-644, gnl|canFam2|chr20 (48985354-48985183) | |
| 503-644, gnl|danRer3|chr11 (3214318-3214459) | |
| 503-644, gnl|danRer3|chr11 (3214459-3214317) | |
| 503-644, gnl|dasNov1|scaffold_58455 (3512-3391) | |
| 503-644, gnl|dasNov1|scaffold_58455 (3389-3512) | |
| 503-644, gnl|echTel1|scaffold_304944 (2970-3111) | |
| 503-644, gnl|echTel1|scaffold_304944 (3113-2959) | |
| 503-644, gnl|fr1|chrUn (88733782-88733648) | |
| 503-644, gnl|fr1|chrUn (88733641-88733797) | |
| 503-644, gnl|galGal2|chr28 (3602977-3603109) | |
| 503-644, gnl|galGal2|chr28 (3603116-3602946) | |
| 503-644, gnl|hg17|chr13 (20079577-20079704) | |
| 503-644, gnl|hg17|chr19 (16539839-16540014) | |
| 503-644, gnl|Hg17|chr19 (16539982-16539841) | |
| 503-644, gnl|loxAfr1|scaffold_8232 (21895-22036) | |
| 503-644, gnl|loxAfr1|scaffold_8232 (22039-21873) | |
| 503-644, gnl|mm7|chr8 (71012468-71012331) | |
| 503-644, gnl|mm7|chr8 (71012328-71012493) | |
| 503-644, gnl|Mm7|chr8 (71012471-71012330) | |
| 503-644, gnl|monDom2|scaffold_100 (3132290-3132154) | |
| 503-644, gnl|monDom2|scaffold_100 (3132148-3132320) | |
| 503-644, gnl|oryCun1|scaffold_89860 (10034-10156) | |
| 503-644, gnl|oryCun1|scaffold_89860 (10159-10038) | |
| 503-644, gnl|panTro1|chr14 (18984295-18984422) | |
| 503-644, gnl|panTro1|chr20 (17225465-17225640) | |
| 503-644, gnl|rheMac2|chr19 (16114020-16113887) | |
| 503-644, gnl|rheMac2|chr19 (16113880-16114055) | |
| 503-644, gnl|rn3|chr16 (17772084-17772217) | |
| 503-644, gnl|rn3|chr16 (17772224-17772059) | |
| 503-644, gnl|tetNig1|chr1 (14650812-14650953) | |
| 503-644, gnl|tetNig1|chr1 (14650953-14650789) | |
| 503-644, gnl|xenTro1|scaffold_1177 (7542-7679) | |
| 503-644, gnl|xenTro1|scaffold_1177 (7683-7530) | |
| 753-980, gnl|bosTau2|chr13 (34966078-34966311) | |
| 768-967, gnl|bosTau2|chr10 (58663926-58664129) | |
| 768-967, gnl|Hg17|chr14 (71367200-71367611) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-433, gnl|bosTau2|chr7 (5829414-5828982) | |
| 1-433, gnl|Hg17|chr19 (16544181-16543755) | |
| 1-433, gnl|Mm7|chr8 (71015605-71015179) | |
| 503-644, gnl|bosTau2|chr7 (5826224-5826083) | |
| 503-644, gnl|canFam2|chr20 (48985210-48985347) | |
| 503-644, gnl|canFam2|chr20 (48985354-48985183) | |
| 503-644, gnl|danRer3|chr11 (3214318-3214459) | |
| 503-644, gnl|danRer3|chr11 (3214459-3214317) | |
| 503-644, gnl|dasNov1|scaffold_58455 (3512-3391) | |
| 503-644, gnl|dasNov1|scaffold_58455 (3389-3512) | |
| 503-644, gnl|echTel1|scaffold_304944 (2970-3111) | |
| 503-644, gnl|echTel1|scaffold_304944 (3113-2959) | |
| 503-644, gnl|fr1|chrUn (88733782-88733648) | |
| 503-644, gnl|fr1|chrUn (88733641-88733797) | |
| 503-644, gnl|galGal2|chr28 (3602977-3603109) | |
| 503-644, gnl|galGal2|chr28 (3603116-3602946) | |
| 503-644, gnl|hg17|chr13 (20079577-20079704) | |
| 503-644, gnl|hg17|chr19 (16539839-16540014) | |
| 503-644, gnl|Hg17|chr19 (16539982-16539841) | |
| 503-644, gnl|loxAfr1|scaffold_8232 (21895-22036) | |
| 503-644, gnl|loxAfr1|scaffold_8232 (22039-21873) | |
| 503-644, gnl|mm7|chr8 (71012468-71012331) | |
| 503-644, gnl|mm7|chr8 (71012328-71012493) | |
| 503-644, gnl|Mm7|chr8 (71012471-71012330) | |
| 503-644, gnl|monDom2|scaffold_100 (3132290-3132154) | |
| 503-644, gnl|monDom2|scaffold_100 (3132148-3132320) | |
| 503-644, gnl|oryCun1|scaffold_89860 (10034-10156) | |
| 503-644, gnl|oryCun1|scaffold_89860 (10159-10038) | |
| 503-644, gnl|panTro1|chr14 (18984295-18984422) | |
| 503-644, gnl|panTro1|chr20 (17225465-17225640) | |
| 503-644, gnl|rheMac2|chr19 (16114020-16113887) | |
| 503-644, gnl|rheMac2|chr19 (16113880-16114055) | |
| 503-644, gnl|rn3|chr16 (17772084-17772217) | |
| 503-644, gnl|rn3|chr16 (17772224-17772059) | |
| 503-644, gnl|tetNig1|chr1 (14650812-14650953) | |
| 503-644, gnl|tetNig1|chr1 (14650953-14650789) | |
| 503-644, gnl|xenTro1|scaffold_1177 (7542-7679) | |
| 503-644, gnl|xenTro1|scaffold_1177 (7683-7530) | |
| 753-980, gnl|bosTau2|chr13 (34966078-34966311) | |
| 768-967, gnl|bosTau2|chr10 (58663926-58664129) | |
| 768-967, gnl|Hg17|chr14 (71367200-71367611) |