Non-Coding RNA Search

Ss1.1-Pig4-TMW8055E23.3

Sequence:


               
               ACTGGAAGTGACCTATAGGCAATGAAGACTACTTCCTTTTACTGCATTTTTACTCGTGTG
CATTCTGGGCGCATGTTGATCGCTGGTTCAGTCCAGGCAACTGACATGCTTTATTAGTCA
TACAGTATTAATGCAGGTGTCAGGAAATGTCAAATATAATTCCATTTTTTATTTTTATTT
TTTTAAGCTTTTGGAAAAGTTCCAGGTCCTCATGTATTGTGCAATAACATTGACTTCTTT
GGCGGTTTGGGGACGTTCATTGCCGGCAATGGACGTTGTAACAGGAAAAATTTTCATTAA
CTCCTGCCACCCAGTGATTAATGCATGATAGGGCCTATGAAATGAACTTATTGGTTAGAA
TGGGATTATAAATAAAGTGAGGGATCCAACATTACCTTGAAAGTCACCCCAACTGTTTAT
ATTTGGTTTCTATGCACTGTGAACCTAAGGTTAACAGCATGAATTAACATGCGTCTTTAA
AGGACTGTAATGAAAGATCATTGCGTATTTATTGAATTGTTTATATCTGCTGTCAAATTG
TTTTGACATGGACAGTTTTCAAGTAACATTGGCAGAGAGGTACAATATGTTATCCCTATG
GTGAAAATAAATTCATTTGTTGTATATAGTTCCTCAATCTCTGAAGTCAAGGTATGAGTA
ATATAGGGTATGAATGGTTTAATCAAGGCTTTATTTTGGAAGTAAGGAAAATGGCAGTGA
TGATTAAACTGCTGCAGTCCATAATTTGGGCTTGTTATTTGTACATTAATGATTTTTTCC
AAGTAGATTACACTCTGTTACTTCCTGCTAGCCATCAGCATGAGCCCTACTGCTAAACAC
TATTTCATTTATTTATGTTTGGAAAATCCATAAACATTTTTGTTTGCAATTTTGTTTCTT
TTGTTACGTTTTAAGTCAAGTTTGAATGTTACAATACTTTAATTGAAGAACTTCTGTCAA
GTTTTTTTCTTGTAAATTTTCCTTACTTGTAAGTATCATCTTGTCCTTCAATCCTGTACC
CTAAAATAAGAAATACATTTTTGACAGAGGCTTAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTGGAAGTGACCTATAGGCAATGAAGACTACTTCCTTTTACTGCATTTTTACTCGTGTG
CATTCTGGGCGCATGTTGATCGCTGGTTCAGTCCAGGCAACTGACATGCTTTATTAGTCA
TACAGTATTAATGCAGGTGTCAGGAAATGTCAAATATAATTCCATTTTTTATTTTTATTT
TTTTAAGCTTTTGGAAAAGTTCCAGGTCCTCATGTATTGTGCAATAACATTGACTTCTTT
GGCGGTTTGGGGACGTTCATTGCCGGCAATGGACGTTGTAACAGGAAAAATTTTCATTAA
CTCCTGCCACCCAGTGATTAATGCATGATAGGGCCTATGAAATGAACTTATTGGTTAGAA
TGGGATTATAAATAAAGTGAGGGATCCAACATTACCTTGAAAGTCACCCCAACTGTTTAT
ATTTGGTTTCTATGCACTGTGAACCTAAGGTTAACAGCATGAATTAACATGCGTCTTTAA
AGGACTGTAATGAAAGATCATTGCGTATTTATTGAATTGTTTATATCTGCTGTCAAATTG
TTTTGACATGGACAGTTTTCAAGTAACATTGGCAGAGAGGTACAATATGTTATCCCTATG
GTGAAAATAAATTCATTTGTTGTATATAGTTCCTCAATCTCTGAAGTCAAGGTATGAGTA
ATATAGGGTATGAATGGTTTAATCAAGGCTTTATTTTGGAAGTAAGGAAAATGGCAGTGA
TGATTAAACTGCTGCAGTCCATAATTTGGGCTTGTTATTTGTACATTAATGATTTTTTCC
AAGTAGATTACACTCTGTTACTTCCTGCTAGCCATCAGCATGAGCCCTACTGCTAAACAC
TATTTCATTTATTTATGTTTGGAAAATCCATAAACATTTTTGTTTGCAATTTTGTTTCTT
TTGTTACGTTTTAAGTCAAGTTTGAATGTTACAATACTTTAATTGAAGAACTTCTGTCAA
GTTTTTTTCTTGTAAATTTTCCTTACTTGTAAGTATCATCTTGTCCTTCAATCCTGTACC
CTAAAATAAGAAATACATTTTTGACAGAGGCTTAAT

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               1-158, - strand, RNAz p=0.985283
               

               
               439-598, - strand, RNAz p=0.798021
               

               
               639-795, + strand, RNAz p=0.867913

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-158, - strand, RNAz p=0.985283
               

               
               439-598, - strand, RNAz p=0.798021
               

               
               639-795, + strand, RNAz p=0.867913

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               27-152, + strand, RNAmicro p=0.998551
               

               
               27-167, - strand, RNAmicro p=0.997328

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               27-152, + strand, RNAmicro p=0.998551
               

               
               27-167, - strand, RNAmicro p=0.997328

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_018299, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_018299, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1056, gnl|bosTau2|chr14 (20853807-20854861)
               

               
               1-1056, gnl|Hg17|chr8 (74868803-74867753)
               

               
               1-1056, gnl|Mm7|chr1 (16760412-16759374)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1056, gnl|bosTau2|chr14 (20853807-20854861)
               

               
               1-1056, gnl|Hg17|chr8 (74868803-74867753)
               

               
               1-1056, gnl|Mm7|chr1 (16760412-16759374)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               cbe (0.239234)
               

               
               tes (0.207814)
               

               
               aor (0.195274)
               

               
               mga (0.160205)
               

               
               isp (0.150376)
               

               
               lin (0.145603)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               tra (0.123092)
               

               
               cbl (0.114797)

Expressed library(ies): 10 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.239234)
               

               
               tes (0.207814)
               

               
               aor (0.195274)
               

               
               mga (0.160205)
               

               
               isp (0.150376)
               

               
               lin (0.145603)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               tra (0.123092)
               

               
               cbl (0.114797)

	1-158, - strand, RNAz p=0.985283
	439-598, - strand, RNAz p=0.798021
	639-795, + strand, RNAz p=0.867913

	27-152, + strand, RNAmicro p=0.998551
	27-167, - strand, RNAmicro p=0.997328

	1-1056, gnl\|bosTau2\|chr14 (20853807-20854861)
	1-1056, gnl\|Hg17\|chr8 (74868803-74867753)
	1-1056, gnl\|Mm7\|chr1 (16760412-16759374)

	cbe (0.239234)
	tes (0.207814)
	aor (0.195274)
	mga (0.160205)
	isp (0.150376)
	lin (0.145603)
	pla (0.133672)
	kid (0.129735)
	tra (0.123092)
	cbl (0.114797)