Ss1.1-Pig4-TMW8055F03.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGTCCTGTCCTTCATCAAGCATGTCCTCTTTCCCCTCAAGTCTGAGTTTGTGATCCTTC GAGATGAAAAATGGGGTGGAAACAAAACCTACACAGCTTACTCGGACCTGGAAAAGGACT TTGCTGATGAGGTTGTACACCCTGGAGACCTAAAGAATTCTGTTGAAGTCGCCTTGAACA AGTTGCTGGATCCCATCCGGGAAAAGTTTAATACCCCTGCTCTAAAGAAACTGTCCAGCG CTGCCTACCCAGATCCCTCCAAGCAGAAGCCAGTCGCCAAAGGCCCTGCCAAGAATTCGG AACCAGAGGAGGTCATCCCGTCCCGGCTGGACATCCGCGTGGGGAGAGTCATTAGTGTGG ACAAGCACCCGGATGCAGACAGCCTGTATGTGGAGAAGGTTGACGTGGGGGAAGCTGAGC CTCGGACTGTGGTGAGCGGCCTGGTGCAGTTTGTGCCCAAGGAGGACCTGCAGGACAGGC TGGTGGTGGTGCTGTGCAATCTGAAACCCCAGAAGATGAGAGGAATCGAGTCCCAAGGCA TGCTTCTGTGTGCTTCTGTGGAAGGGGTAAGCCGCAAGGTTGAGCCTCTGGACCCTCCTG CAGGCTCAGCTCCTGGGGAGCGAGTGTTTGTGAAGGGCTATGAGAAGGGCCAACCAGATG AGGAGCTTAAGCCCAAGAAGAAAGTCTTTGAGAAGCTGCAGGCTGACTTTAAAATTTCTG AGGAGTGCATCGCACAGTGGAAGCAAACTAACTTCATGACCAAGCTGGGGTCCATCTCCT GTAAATCGCTGAAAGGAGGGAACATCAGCTAGCCAACCCTGTGTCATCCTTTCTCCCGTC ATCCCGAGTCATCTGCCGTCTCCTTAATTTGCTCCATCCATCCATCACCCATTTACCCAT CTCTCAGGACACTGAAGCAGAAAGTTTGAGACTCTGATAGGGGCAGGACTCAGTAAGGGG CAGCTCAGCCTCCCCAGAATCCAGGATCATCCTGTGTGCCTGCAGGGAGAGGCTGGCCTG CCAAGTAGTGATGAGGGCAGGGGAGCACGGGAGTCCAGCTCTGCCTTCTACCCCTGGCAG CTGACCTGAGAAATCTGGTTTCAATATAATAATGTAACTCAAAAAGTTTATGCCACAGTC CTTCTAATTGGAAAAATATCGGTTGCCAGTTTTCCTAGAGTTCTCCCAGCAGCTGTGCCT CTGGCTGGGAGCTGTGCCTGTACTGGGCTAATTACAGCCTCTCCCCAACAGGAAACTGTG GGATTTGAAAAGGAAAGGGAAGGGAAAACAGAGAACCTAGTGGTCTACCAAGTGGTTGGC AGCTTTCCCCAGTGCCTGCCAGCCCTGAGGCTTTGCTCCTGGAATTTTCCTTGATCCTGC TGGGTGGGGACCCTCCCTAAACCAGCTGTGTGTTGTTAACATCAGAATTAGGGTGGGTGG CACAGCCTGGGTTTTCTTAGGGAGGGTGGGGGTACTTCTCCATCAATCAGAACCACTAAG CATCACTGTCATGAATTCAAATAAAACGTCTGGACAAGGAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGTCCTGTCCTTCATCAAGCATGTCCTCTTTCCCCTCAAGTCTGAGTTTGTGATCCTTC GAGATGAAAAATGGGGTGGAAACAAAACCTACACAGCTTACTCGGACCTGGAAAAGGACT TTGCTGATGAGGTTGTACACCCTGGAGACCTAAAGAATTCTGTTGAAGTCGCCTTGAACA AGTTGCTGGATCCCATCCGGGAAAAGTTTAATACCCCTGCTCTAAAGAAACTGTCCAGCG CTGCCTACCCAGATCCCTCCAAGCAGAAGCCAGTCGCCAAAGGCCCTGCCAAGAATTCGG AACCAGAGGAGGTCATCCCGTCCCGGCTGGACATCCGCGTGGGGAGAGTCATTAGTGTGG ACAAGCACCCGGATGCAGACAGCCTGTATGTGGAGAAGGTTGACGTGGGGGAAGCTGAGC CTCGGACTGTGGTGAGCGGCCTGGTGCAGTTTGTGCCCAAGGAGGACCTGCAGGACAGGC TGGTGGTGGTGCTGTGCAATCTGAAACCCCAGAAGATGAGAGGAATCGAGTCCCAAGGCA TGCTTCTGTGTGCTTCTGTGGAAGGGGTAAGCCGCAAGGTTGAGCCTCTGGACCCTCCTG CAGGCTCAGCTCCTGGGGAGCGAGTGTTTGTGAAGGGCTATGAGAAGGGCCAACCAGATG AGGAGCTTAAGCCCAAGAAGAAAGTCTTTGAGAAGCTGCAGGCTGACTTTAAAATTTCTG AGGAGTGCATCGCACAGTGGAAGCAAACTAACTTCATGACCAAGCTGGGGTCCATCTCCT GTAAATCGCTGAAAGGAGGGAACATCAGCTAGCCAACCCTGTGTCATCCTTTCTCCCGTC ATCCCGAGTCATCTGCCGTCTCCTTAATTTGCTCCATCCATCCATCACCCATTTACCCAT CTCTCAGGACACTGAAGCAGAAAGTTTGAGACTCTGATAGGGGCAGGACTCAGTAAGGGG CAGCTCAGCCTCCCCAGAATCCAGGATCATCCTGTGTGCCTGCAGGGAGAGGCTGGCCTG CCAAGTAGTGATGAGGGCAGGGGAGCACGGGAGTCCAGCTCTGCCTTCTACCCCTGGCAG CTGACCTGAGAAATCTGGTTTCAATATAATAATGTAACTCAAAAAGTTTATGCCACAGTC CTTCTAATTGGAAAAATATCGGTTGCCAGTTTTCCTAGAGTTCTCCCAGCAGCTGTGCCT CTGGCTGGGAGCTGTGCCTGTACTGGGCTAATTACAGCCTCTCCCCAACAGGAAACTGTG GGATTTGAAAAGGAAAGGGAAGGGAAAACAGAGAACCTAGTGGTCTACCAAGTGGTTGGC AGCTTTCCCCAGTGCCTGCCAGCCCTGAGGCTTTGCTCCTGGAATTTTCCTTGATCCTGC TGGGTGGGGACCCTCCCTAAACCAGCTGTGTGTTGTTAACATCAGAATTAGGGTGGGTGG CACAGCCTGGGTTTTCTTAGGGAGGGTGGGGGTACTTCTCCATCAATCAGAACCACTAAG CATCACTGTCATGAATTCAAATAAAACGTCTGGACAAGGAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 130-231, + strand, RNAz p=0.837278 | |
| 936-1091, + strand, RNAz p=0.857652 | |
| 1169-1287, + strand, RNAz p=0.89468 | |
| 1388-1486, - strand, RNAz p=0.998624 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 130-231, + strand, RNAz p=0.837278 | |
| 936-1091, + strand, RNAz p=0.857652 | |
| 1169-1287, + strand, RNAz p=0.89468 | |
| 1388-1486, - strand, RNAz p=0.998624 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_003680, + |
| Aligned organism(s): 53 entry(ies) | More info |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
| 130-267, gnl|bosTau2|chr2 (74064760-74064623) | |
| 130-267, gnl|canFam2|chr2 (71451512-71451331) | |
| 130-267, gnl|danRer3|chr19 (45583331-45583477) | |
| 130-267, gnl|dasNov1|scaffold_5270 (50594-50410) | |
| 130-267, gnl|echTel1|scaffold_304001 (10841-11013) | |
| 130-267, gnl|fr1|chrUn (1035984-1035831) | |
| 130-267, gnl|galGal2|chr23 (4688512-4688696) | |
| 130-267, gnl|hg17|chr1 (32917079-32917259) | |
| 130-267, gnl|Hg17|chr1 (32917235-32917098) | |
| 130-267, gnl|loxAfr1|scaffold_14066 (586-406) | |
| 130-267, gnl|mm7|chr4 (128658751-128658572) | |
| 130-267, gnl|Mm7|chr4 (128658594-128658731) | |
| 130-267, gnl|monDom2|scaffold_43 (6924004-6923829) | |
| 130-267, gnl|oryCun1|scaffold_175046 (29259-29438) | |
| 130-267, gnl|panTro1|chr1 (33662707-33662887) | |
| 130-267, gnl|rheMac2|chr1 (35564887-35565067) | |
| 130-267, gnl|rn3|chr5 (148383425-148383247) | |
| 130-267, gnl|tetNig1|chr21 (4170778-4170915) | |
| 130-267, gnl|xenTro1|scaffold_439 (134351-134508) | |
| 364-560, gnl|bosTau2|chr2 (74062677-74062481) | |
| 364-560, gnl|canFam2|chr2 (71453739-71453496) | |
| 364-560, gnl|danRer3|chr19 (45581904-45582112) | |
| 364-560, gnl|dasNov1|scaffold_5270 (55090-54852) | |
| 364-560, gnl|echTel1|scaffold_304001 (8555-8789) | |
| 364-560, gnl|fr1|chrUn (1036446-1036228) | |
| 364-560, gnl|galGal2|chr23 (4687754-4687986) | |
| 364-560, gnl|hg17|chr1 (32914750-32914988) | |
| 364-560, gnl|Hg17|chr1 (32914974-32914778) | |
| 364-560, gnl|loxAfr1|scaffold_14066 (2801-2563) | |
| 364-560, gnl|mm7|chr4 (128660093-128659861) | |
| 364-560, gnl|Mm7|chr4 (128659871-128660067) | |
| 364-560, gnl|monDom2|scaffold_43 (6926562-6926329) | |
| 364-560, gnl|oryCun1|scaffold_207851 (13463-13686) | |
| 364-560, gnl|panTro1|chr1 (33660376-33660614) | |
| 364-560, gnl|rheMac2|chr1 (35562215-35562451) | |
| 364-560, gnl|rn3|chr5 (148385243-148385009) | |
| 364-560, gnl|tetNig1|chr21 (4170238-4170456) | |
| 364-560, gnl|xenTro1|scaffold_439 (133173-133399) | |
| 699-1539, gnl|bosTau2|chr2 (74060630-74059783) | |
| 699-1539, gnl|canFam2|chr2 (71456532-71455884) | |
| 699-1539, gnl|dasNov1|scaffold_5270 (58483-57885) | |
| 699-1539, gnl|echTel1|scaffold_304001 (5657-6215) | |
| 699-1539, gnl|galGal2|chr23 (4686461-4687020) | |
| 699-1539, gnl|hg17|chr1 (32909922-32910538) | |
| 699-1539, gnl|Hg17|chr1 (32910788-32909934) | |
| 699-1539, gnl|loxAfr1|scaffold_14066 (7035-6393) | |
| 699-1539, gnl|mm7|chr4 (128663904-128663289) | |
| 699-1539, gnl|Mm7|chr4 (128663075-128663882) | |
| 699-1539, gnl|monDom2|scaffold_43 (6928582-6927928) | |
| 699-1539, gnl|oryCun1|scaffold_207851 (10571-11154) | |
| 699-1539, gnl|panTro1|chr1 (33655032-33655648) | |
| 699-1539, gnl|rheMac2|chr1 (35557596-35558209) | |
| 699-1539, gnl|rn3|chr5 (148389050-148388433) |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 130-267, gnl|bosTau2|chr2 (74064760-74064623) | |
| 130-267, gnl|canFam2|chr2 (71451512-71451331) | |
| 130-267, gnl|danRer3|chr19 (45583331-45583477) | |
| 130-267, gnl|dasNov1|scaffold_5270 (50594-50410) | |
| 130-267, gnl|echTel1|scaffold_304001 (10841-11013) | |
| 130-267, gnl|fr1|chrUn (1035984-1035831) | |
| 130-267, gnl|galGal2|chr23 (4688512-4688696) | |
| 130-267, gnl|hg17|chr1 (32917079-32917259) | |
| 130-267, gnl|Hg17|chr1 (32917235-32917098) | |
| 130-267, gnl|loxAfr1|scaffold_14066 (586-406) | |
| 130-267, gnl|mm7|chr4 (128658751-128658572) | |
| 130-267, gnl|Mm7|chr4 (128658594-128658731) | |
| 130-267, gnl|monDom2|scaffold_43 (6924004-6923829) | |
| 130-267, gnl|oryCun1|scaffold_175046 (29259-29438) | |
| 130-267, gnl|panTro1|chr1 (33662707-33662887) | |
| 130-267, gnl|rheMac2|chr1 (35564887-35565067) | |
| 130-267, gnl|rn3|chr5 (148383425-148383247) | |
| 130-267, gnl|tetNig1|chr21 (4170778-4170915) | |
| 130-267, gnl|xenTro1|scaffold_439 (134351-134508) | |
| 364-560, gnl|bosTau2|chr2 (74062677-74062481) | |
| 364-560, gnl|canFam2|chr2 (71453739-71453496) | |
| 364-560, gnl|danRer3|chr19 (45581904-45582112) | |
| 364-560, gnl|dasNov1|scaffold_5270 (55090-54852) | |
| 364-560, gnl|echTel1|scaffold_304001 (8555-8789) | |
| 364-560, gnl|fr1|chrUn (1036446-1036228) | |
| 364-560, gnl|galGal2|chr23 (4687754-4687986) | |
| 364-560, gnl|hg17|chr1 (32914750-32914988) | |
| 364-560, gnl|Hg17|chr1 (32914974-32914778) | |
| 364-560, gnl|loxAfr1|scaffold_14066 (2801-2563) | |
| 364-560, gnl|mm7|chr4 (128660093-128659861) | |
| 364-560, gnl|Mm7|chr4 (128659871-128660067) | |
| 364-560, gnl|monDom2|scaffold_43 (6926562-6926329) | |
| 364-560, gnl|oryCun1|scaffold_207851 (13463-13686) | |
| 364-560, gnl|panTro1|chr1 (33660376-33660614) | |
| 364-560, gnl|rheMac2|chr1 (35562215-35562451) | |
| 364-560, gnl|rn3|chr5 (148385243-148385009) | |
| 364-560, gnl|tetNig1|chr21 (4170238-4170456) | |
| 364-560, gnl|xenTro1|scaffold_439 (133173-133399) | |
| 699-1539, gnl|bosTau2|chr2 (74060630-74059783) | |
| 699-1539, gnl|canFam2|chr2 (71456532-71455884) | |
| 699-1539, gnl|dasNov1|scaffold_5270 (58483-57885) | |
| 699-1539, gnl|echTel1|scaffold_304001 (5657-6215) | |
| 699-1539, gnl|galGal2|chr23 (4686461-4687020) | |
| 699-1539, gnl|hg17|chr1 (32909922-32910538) | |
| 699-1539, gnl|Hg17|chr1 (32910788-32909934) | |
| 699-1539, gnl|loxAfr1|scaffold_14066 (7035-6393) | |
| 699-1539, gnl|mm7|chr4 (128663904-128663289) | |
| 699-1539, gnl|Mm7|chr4 (128663075-128663882) | |
| 699-1539, gnl|monDom2|scaffold_43 (6928582-6927928) | |
| 699-1539, gnl|oryCun1|scaffold_207851 (10571-11154) | |
| 699-1539, gnl|panTro1|chr1 (33655032-33655648) | |
| 699-1539, gnl|rheMac2|chr1 (35557596-35558209) | |
| 699-1539, gnl|rn3|chr5 (148389050-148388433) |
| Expressed library(ies): 13 entry(ies) | More info |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
| nlu (0.383362) | |
| fli (0.202881) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| eli (0.151814) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| pla (0.133672) | |
| cov (0.132153) | |
| cly (0.120642) | |
| ebs (0.118301) | |
| jca (0.11396) |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nlu (0.383362) | |
| fli (0.202881) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| eli (0.151814) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| pla (0.133672) | |
| cov (0.132153) | |
| cly (0.120642) | |
| ebs (0.118301) | |
| jca (0.11396) |