Non-Coding RNA Search

Ss1.1-Pig4-TMW8055F05.3

Sequence:


               
               TGTGGCACAGAGGACTTCAACACAGACTTCTTGACCAAATGATTGCATGCTCTGGGAGTT
CAGAGGACGAAGGCAAGAAGCTTGGCTTGAACTGTTTGATGCTAATATAATTTATTTCTG
AGGCAAGTTGAAAAATGAGGTATATCTCTCAGAGAACATCAGTCCAATGCAGGAGATACT
CGGCAGACCCACGGTTGCAGCTGCCTGAATCAGACCCCCTGCTTGGGCACAGAATCATCA
ACCTGCTGCGCATTAACCTCCCAAACCGCACTTGGACATGGTAGTCTTAGGGGACCGGGG
ATGCCTTGTAATGCTGGACTCTGCTCTACAAAGATCACATAGCTGGGGATGGAGAGGGAT
GTGAGCCTGCGAAACCGAACAGTGCCATCGCCTGACGCCAACGCTGCTGCCTCTGCTCCC
TCCTCTGCTCCAGTCCACCTGGTTCCTGCTGCCCGAGGGGCACCATGGGCTTCTGGAAAT
TTCCGCCCTTCCTGGTTCTCAGCATCCTGGTCCTGTACCAGGCAGGCATGTTCCACACAG
CACCAATGAGGTCTGCCTTTGGGAGCCCTTTTGATCCTGCTACCCTCTCTGAGGAGGAAT
CACGCCTCCTTTTGGCTGCAATGGTGAATGACTATGAGCAGATGAAGGCCCGTGAGATGC
AGAAGCAGAGGGCACAGGGCTCCGGCATCAGTGTCCAGAAGAGATCCTGCAACACTGCCA
CCTGCATGACCCATCGGCTGGTGGGCTTGCTCAGCAGATCTGGGAGCATGGTGAGGAGCA
ACCTGTTGCCCACCAAGATGGGCTTCAAAGTCTTTGGTGGGCGCCGCAGGAACTTTTGGA
TCTGAGCAGTGGGATGATTCCAGGAGGAAGGTTACTATGACTCTGAACTCTACTTCGTTT
AATTTACAATGAAAGCAACCTACTAAAAAATAGCATGGAAGACATCCATGTATGCATGCT
TCTGGAAACTGAAAACACTCTTTTCCTTGAAATAAACTAAAACTAAATGCAAAATAAAAT
CAATGCATCAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTGGCACAGAGGACTTCAACACAGACTTCTTGACCAAATGATTGCATGCTCTGGGAGTT
CAGAGGACGAAGGCAAGAAGCTTGGCTTGAACTGTTTGATGCTAATATAATTTATTTCTG
AGGCAAGTTGAAAAATGAGGTATATCTCTCAGAGAACATCAGTCCAATGCAGGAGATACT
CGGCAGACCCACGGTTGCAGCTGCCTGAATCAGACCCCCTGCTTGGGCACAGAATCATCA
ACCTGCTGCGCATTAACCTCCCAAACCGCACTTGGACATGGTAGTCTTAGGGGACCGGGG
ATGCCTTGTAATGCTGGACTCTGCTCTACAAAGATCACATAGCTGGGGATGGAGAGGGAT
GTGAGCCTGCGAAACCGAACAGTGCCATCGCCTGACGCCAACGCTGCTGCCTCTGCTCCC
TCCTCTGCTCCAGTCCACCTGGTTCCTGCTGCCCGAGGGGCACCATGGGCTTCTGGAAAT
TTCCGCCCTTCCTGGTTCTCAGCATCCTGGTCCTGTACCAGGCAGGCATGTTCCACACAG
CACCAATGAGGTCTGCCTTTGGGAGCCCTTTTGATCCTGCTACCCTCTCTGAGGAGGAAT
CACGCCTCCTTTTGGCTGCAATGGTGAATGACTATGAGCAGATGAAGGCCCGTGAGATGC
AGAAGCAGAGGGCACAGGGCTCCGGCATCAGTGTCCAGAAGAGATCCTGCAACACTGCCA
CCTGCATGACCCATCGGCTGGTGGGCTTGCTCAGCAGATCTGGGAGCATGGTGAGGAGCA
ACCTGTTGCCCACCAAGATGGGCTTCAAAGTCTTTGGTGGGCGCCGCAGGAACTTTTGGA
TCTGAGCAGTGGGATGATTCCAGGAGGAAGGTTACTATGACTCTGAACTCTACTTCGTTT
AATTTACAATGAAAGCAACCTACTAAAAAATAGCATGGAAGACATCCATGTATGCATGCT
TCTGGAAACTGAAAACACTCTTTTCCTTGAAATAAACTAAAACTAAATGCAAAATAAAAT
CAATGCATCAAT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q862B1_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q862B1_PIG

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               195-369, gnl|bosTau2|chr15 (21937675-21937851)
               

               
               195-369, gnl|Hg17|chr11 (14950934-14950770)
               

               
               195-369, gnl|Mm7|chr7 (110552913-110552667)
               


               
               549-683, gnl|bosTau2|chr15 (21921582-21921719)
               

               
               549-683, gnl|Hg17|chr11 (14948199-14948059)
               

               
               549-683, gnl|Mm7|chr7 (110550675-110550535)
               


               
               687-876, gnl|bosTau2|chr15 (21922008-21922197)
               

               
               687-876, gnl|Hg17|chr11 (14945981-14945790)
               

               
               687-876, gnl|Mm7|chr7 (110548669-110548475)
               


               
               883-1022, gnl|bosTau2|chr15 (22523272-22523136)
               

               
               883-1022, gnl|Hg17|chr11 (14945255-14945074)
               

               
               883-1022, gnl|Mm7|chr7 (110547956-110547822)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               195-369, gnl|bosTau2|chr15 (21937675-21937851)
               

               
               195-369, gnl|Hg17|chr11 (14950934-14950770)
               

               
               195-369, gnl|Mm7|chr7 (110552913-110552667)
               


               
               549-683, gnl|bosTau2|chr15 (21921582-21921719)
               

               
               549-683, gnl|Hg17|chr11 (14948199-14948059)
               

               
               549-683, gnl|Mm7|chr7 (110550675-110550535)
               


               
               687-876, gnl|bosTau2|chr15 (21922008-21922197)
               

               
               687-876, gnl|Hg17|chr11 (14945981-14945790)
               

               
               687-876, gnl|Mm7|chr7 (110548669-110548475)
               


               
               883-1022, gnl|bosTau2|chr15 (22523272-22523136)
               

               
               883-1022, gnl|Hg17|chr11 (14945255-14945074)
               

               
               883-1022, gnl|Mm7|chr7 (110547956-110547822)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fhi (0.169578)
               

               
               hyp (0.142837)
               

               
               ebs (0.118301)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.169578)
               

               
               hyp (0.142837)
               

               
               ebs (0.118301)

	195-369, gnl\|bosTau2\|chr15 (21937675-21937851)
	195-369, gnl\|Hg17\|chr11 (14950934-14950770)
	195-369, gnl\|Mm7\|chr7 (110552913-110552667)

	549-683, gnl\|bosTau2\|chr15 (21921582-21921719)
	549-683, gnl\|Hg17\|chr11 (14948199-14948059)
	549-683, gnl\|Mm7\|chr7 (110550675-110550535)

	687-876, gnl\|bosTau2\|chr15 (21922008-21922197)
	687-876, gnl\|Hg17\|chr11 (14945981-14945790)
	687-876, gnl\|Mm7\|chr7 (110548669-110548475)

	883-1022, gnl\|bosTau2\|chr15 (22523272-22523136)
	883-1022, gnl\|Hg17\|chr11 (14945255-14945074)
	883-1022, gnl\|Mm7\|chr7 (110547956-110547822)