Non-Coding RNA Search

Ss1.1-Pig4-TMW8055F15.3

Sequence:


               
               CTCCTCCTCCTCTTGAGGTGGGAGAGGCTTCAAACTTACCACCCCCACCTCCACCTTATT
CGTGTGATCCAAGTGGCAGTGATCTGCCTCAAGATACAAAAGTTTTGCAGTATTATTTCA
ATCTGGGATTGCAGTGTTATCATCACAGCTACTGGCACTCCATGGTCTATGTGCCACAGA
TGCAGCAGCAGCAGCTTCATGTAGAGAATTATCCAGTCTATACTGAGCCACATCCTCTGG
TAGATCAAACCATTCCTCCATTATACAGTGAGGTGGGGAGACAAGATGGCACACAAGCAG
AAGTATCAGCAAATTGTCCTTTTCCAAATGCTGACCCTGCCTCTGTCCCTCATGGAGCAG
TCTATTATCCAGTAATGTCAGATCCCTATGGGCAGCCACCTTTGCCAGGTTTTGATTCCT
GCCTTCCTGTTGTACCAGATTATCCCTATGTTGCCCCCTGGCATCCAGTTGGTGCAGCAT
ATGGTGGTTCTCCTCAAATTCATGGTGCTATGACTCCTGGGCCACTTGGCTATGTTGCTT
CATCTCCCTCAGCTTCTCATTATGTACCTCAGAATATGTGAGATTCAGCAGTACAAAGTA
TTCTTGCACTGCCATTTTCCTTGATGTTTTGGTTTTTAAAAAGTGTTTTATGTTAGTGTT
TAAGTGATTTAGGATGATTAGAGTGGTTACTATTGTATCTGTCTTTAAGATTATTTTATC
TTTTGGTTTAAAATAGTACTTTAAATATTACTTTGGGTTGTGAATAAGGAAATTGAGATG
GATGTACAACTAGCCCCATATTTGAGCATTTTTCATTGTATTCAGCTATTTTCCTGTCAG
CCAGCTTGTCAACTTTATATTAGCTGATGGTACCAATTGATAAAAGGAATAAATCATACG
AGCTATTTCCTTGGTTCAGATGTCACATAGCATATTAAGCCGTGCAAAACTGGAAAAAAA
CTTCTACTTGTTTCTAGAAAATAAAACAACAAAATCAAGAGCATTTGCTTCTGGGTAACA
AACTTAGTATTAAATGCGAGAGCTCTTCAGGCTTCTTAAGAATTGTCTGAACTGAGTTGT
GTTCTATGATATTAATCAGTTTCGAAGGCACATGGTGCTCTGCTTTAGATTTATCCCATA
TGCTATTGTTTAATATTGGATTTCTGTAACTGTTTTACTGCACAGTATTGAATTGATGTC
CTTTGCACAGTTAGCAGTAAATAAAAATTAGCATTTAAAATTGCTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCCTCCTCCTCTTGAGGTGGGAGAGGCTTCAAACTTACCACCCCCACCTCCACCTTATT
CGTGTGATCCAAGTGGCAGTGATCTGCCTCAAGATACAAAAGTTTTGCAGTATTATTTCA
ATCTGGGATTGCAGTGTTATCATCACAGCTACTGGCACTCCATGGTCTATGTGCCACAGA
TGCAGCAGCAGCAGCTTCATGTAGAGAATTATCCAGTCTATACTGAGCCACATCCTCTGG
TAGATCAAACCATTCCTCCATTATACAGTGAGGTGGGGAGACAAGATGGCACACAAGCAG
AAGTATCAGCAAATTGTCCTTTTCCAAATGCTGACCCTGCCTCTGTCCCTCATGGAGCAG
TCTATTATCCAGTAATGTCAGATCCCTATGGGCAGCCACCTTTGCCAGGTTTTGATTCCT
GCCTTCCTGTTGTACCAGATTATCCCTATGTTGCCCCCTGGCATCCAGTTGGTGCAGCAT
ATGGTGGTTCTCCTCAAATTCATGGTGCTATGACTCCTGGGCCACTTGGCTATGTTGCTT
CATCTCCCTCAGCTTCTCATTATGTACCTCAGAATATGTGAGATTCAGCAGTACAAAGTA
TTCTTGCACTGCCATTTTCCTTGATGTTTTGGTTTTTAAAAAGTGTTTTATGTTAGTGTT
TAAGTGATTTAGGATGATTAGAGTGGTTACTATTGTATCTGTCTTTAAGATTATTTTATC
TTTTGGTTTAAAATAGTACTTTAAATATTACTTTGGGTTGTGAATAAGGAAATTGAGATG
GATGTACAACTAGCCCCATATTTGAGCATTTTTCATTGTATTCAGCTATTTTCCTGTCAG
CCAGCTTGTCAACTTTATATTAGCTGATGGTACCAATTGATAAAAGGAATAAATCATACG
AGCTATTTCCTTGGTTCAGATGTCACATAGCATATTAAGCCGTGCAAAACTGGAAAAAAA
CTTCTACTTGTTTCTAGAAAATAAAACAACAAAATCAAGAGCATTTGCTTCTGGGTAACA
AACTTAGTATTAAATGCGAGAGCTCTTCAGGCTTCTTAAGAATTGTCTGAACTGAGTTGT
GTTCTATGATATTAATCAGTTTCGAAGGCACATGGTGCTCTGCTTTAGATTTATCCCATA
TGCTATTGTTTAATATTGGATTTCTGTAACTGTTTTACTGCACAGTATTGAATTGATGTC
CTTTGCACAGTTAGCAGTAAATAAAAATTAGCATTTAAAATTGCTAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1105-1223, - strand, RNAz p=0.678662

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1105-1223, - strand, RNAz p=0.678662

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               95-257, gnl|bosTau2|chr10 (67719219-67719381)
               


               
               564-1248, gnl|bosTau2|chr10 (67719237-67718555)
               

               
               564-1248, gnl|Hg17|chrX (110809355-110810021)
               

               
               564-1248, gnl|Mm7|chrX (139038112-139038769)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               95-257, gnl|bosTau2|chr10 (67719219-67719381)
               


               
               564-1248, gnl|bosTau2|chr10 (67719237-67718555)
               

               
               564-1248, gnl|Hg17|chrX (110809355-110810021)
               

               
               564-1248, gnl|Mm7|chrX (139038112-139038769)

Expressed library(ies): 19 entry(ies)

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Expressed library(ies): 19 entry(ies)

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               lin (0.873617)
               

               
               tra (0.61546)
               

               
               spl (0.572738)
               

               
               aor (0.390549)
               

               
               sag (0.36543)
               

               
               lyg (0.266205)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               cje (0.165235)
               

               
               cki (0.165235)
               

               
               mga (0.160205)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               ste (0.135208)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.873617)
               

               
               tra (0.61546)
               

               
               spl (0.572738)
               

               
               aor (0.390549)
               

               
               sag (0.36543)
               

               
               lyg (0.266205)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               cje (0.165235)
               

               
               cki (0.165235)
               

               
               mga (0.160205)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               ste (0.135208)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)

	95-257, gnl\|bosTau2\|chr10 (67719219-67719381)

	564-1248, gnl\|bosTau2\|chr10 (67719237-67718555)
	564-1248, gnl\|Hg17\|chrX (110809355-110810021)
	564-1248, gnl\|Mm7\|chrX (139038112-139038769)

	lin (0.873617)
	tra (0.61546)
	spl (0.572738)
	aor (0.390549)
	sag (0.36543)
	lyg (0.266205)
	gul (0.177588)
	fty (0.17584)
	cje (0.165235)
	cki (0.165235)
	mga (0.160205)
	isp (0.150376)
	ski (0.146735)
	liv (0.146284)
	ste (0.135208)
	ret (0.128733)
	sug (0.127291)
	pgl (0.118483)
	spc (0.113366)