Ss1.1-Pig4-TMW8055G03.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CACTTTGAGCCTGGAGCACTTTGAGGTAAATGTGGTGCCTCTCACCATCCAGCTGACACA CCAGTTCTTCCATAGAATAATGGGCTTTTTCTTTCCTGGCCGAAGTGTGGAAGATGATGA GGTTGGTGATGAAGAAGATAAGTCCAAACTGGTGACTACTGGAATACCAGTGGTGAAGCC TCGGCAGCTGATTGCAACAGATGATGCAGCACCACTGGGCCCTGGGAAGGGTGTGGCACA GGGCTTGAATCGGAGTTCTGGGGTCAGAAGGTCATTTCGCAAAGCACCTGAGCACCCTGT GGATGATATTGACAAGATGAAAGAGCGAGCTGCCATGAACAACTCCTTCATCTACATTAA GATCCCACAGGTTCCACTGTGCGTCAGCTACAAGGGTGAGAAGAACAGTGTGGACTGGGG TGATCTTAAACTGGTGCTGCCCTGTCTGGAGTACCACAACAACACATGGACATGGCTAGA CTTTGCCATGGCTGTCAAGAGGGATAGCCGCAAAGCCCTGGTTGCCCAGGTAATCAAAGA GAAGCTAAGGCTGAAGCCTGCAACAGGGGCTGAGGTCCGGGGAAAGCTAGAAACTAAGTC GGACCTCAACATGCAACAGCAGGAAGAGGAGGAGAAAGCCCGGCTCCTCATCGGTTTAAG TGTGGGCAACAAGAACCCTGGGAAGAAGTCCATCTTTGGCAGGCGCAAGTGATCCGGCAA TCCGAGAGGCTGCAGTACAGGATCTGACTTTGGCTCAGGCCCCAGGGACTTGGGGGGTGG GAGGTGCTTCCCTTCATCCATCAGGATTTGTGGGGGTCAGGAGGCCACAGGGTCCTGTGG AGAGAGGCCCTGCTTTTTAGCAGCTGCCTTGTTCCCTGCAGAACATGGTGGCTAATAATG CTGAGTTCTACCTCACACTGATCAGCAGGCCCAGGGCAGAGAGGCATCAAGAGAGCAAGA CCCAGGAAATGGCCCCATGGCTAGAATATGGTTCCCTTGGGGTCACCTGAAAGTGTGGGG GCACAGTTCTGATCAAGTGTGATAAATTTTTATAAACAGACATATATATATATATATAAA GTATATATATATACGCACATATATATATTTCTAAGTATAACTTCTCTCCCTCTGTGCCAG AAAGTGGAGGGGAGGGGCTGATCTGTCTCTCACCCACTGCCTTGTATGAAAGGGGTATTA GTGTTCTGGGGAGAATCAGCCTCTCCCCAGTCTGTGCCAAGCTCACTTGGGAGAATGGCA ATAGGGGACAGGGCTGGCCATGGGTCCCTCTCCCTGGGGTATCCCCTGAAGAATGGTTAA AAAAAAAAAAAAAAATTTAAAGAGAAAAAATTTTTTTTAAATTTGAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CACTTTGAGCCTGGAGCACTTTGAGGTAAATGTGGTGCCTCTCACCATCCAGCTGACACA CCAGTTCTTCCATAGAATAATGGGCTTTTTCTTTCCTGGCCGAAGTGTGGAAGATGATGA GGTTGGTGATGAAGAAGATAAGTCCAAACTGGTGACTACTGGAATACCAGTGGTGAAGCC TCGGCAGCTGATTGCAACAGATGATGCAGCACCACTGGGCCCTGGGAAGGGTGTGGCACA GGGCTTGAATCGGAGTTCTGGGGTCAGAAGGTCATTTCGCAAAGCACCTGAGCACCCTGT GGATGATATTGACAAGATGAAAGAGCGAGCTGCCATGAACAACTCCTTCATCTACATTAA GATCCCACAGGTTCCACTGTGCGTCAGCTACAAGGGTGAGAAGAACAGTGTGGACTGGGG TGATCTTAAACTGGTGCTGCCCTGTCTGGAGTACCACAACAACACATGGACATGGCTAGA CTTTGCCATGGCTGTCAAGAGGGATAGCCGCAAAGCCCTGGTTGCCCAGGTAATCAAAGA GAAGCTAAGGCTGAAGCCTGCAACAGGGGCTGAGGTCCGGGGAAAGCTAGAAACTAAGTC GGACCTCAACATGCAACAGCAGGAAGAGGAGGAGAAAGCCCGGCTCCTCATCGGTTTAAG TGTGGGCAACAAGAACCCTGGGAAGAAGTCCATCTTTGGCAGGCGCAAGTGATCCGGCAA TCCGAGAGGCTGCAGTACAGGATCTGACTTTGGCTCAGGCCCCAGGGACTTGGGGGGTGG GAGGTGCTTCCCTTCATCCATCAGGATTTGTGGGGGTCAGGAGGCCACAGGGTCCTGTGG AGAGAGGCCCTGCTTTTTAGCAGCTGCCTTGTTCCCTGCAGAACATGGTGGCTAATAATG CTGAGTTCTACCTCACACTGATCAGCAGGCCCAGGGCAGAGAGGCATCAAGAGAGCAAGA CCCAGGAAATGGCCCCATGGCTAGAATATGGTTCCCTTGGGGTCACCTGAAAGTGTGGGG GCACAGTTCTGATCAAGTGTGATAAATTTTTATAAACAGACATATATATATATATATAAA GTATATATATATACGCACATATATATATTTCTAAGTATAACTTCTCTCCCTCTGTGCCAG AAAGTGGAGGGGAGGGGCTGATCTGTCTCTCACCCACTGCCTTGTATGAAAGGGGTATTA GTGTTCTGGGGAGAATCAGCCTCTCCCCAGTCTGTGCCAAGCTCACTTGGGAGAATGGCA ATAGGGGACAGGGCTGGCCATGGGTCCCTCTCCCTGGGGTATCCCCTGAAGAATGGTTAA AAAAAAAAAAAAAAATTTAAAGAGAAAAAATTTTTTTTAAATTTGAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 21-139, + strand, RNAz p=0.663071 | |
| 291-395, - strand, RNAz p=0.752869 | |
| 1042-1366, - strand, RNAz p=0.999205 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 21-139, + strand, RNAz p=0.663071 | |
| 291-395, - strand, RNAz p=0.752869 | |
| 1042-1366, - strand, RNAz p=0.999205 |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 21-162, gnl|bosTau2|chr19 (13604615-13604474) | |
| 21-162, gnl|canFam2|chr9 (46145248-46145416) | |
| 21-162, gnl|danRer3|chr15 (12006489-12006656) | |
| 21-162, gnl|dasNov1|scaffold_23589 (9215-9046) | |
| 21-162, gnl|echTel1|scaffold_317923 (51293-51460) | |
| 21-162, gnl|fr1|chrUn (15713204-15713365) | |
| 21-162, gnl|galGal2|chr19 (5400779-5400933) | |
| 21-162, gnl|hg17|chr17 (23967761-23967929) | |
| 21-162, gnl|Hg17|chr17 (23967903-23967762) | |
| 21-162, gnl|loxAfr1|scaffold_5483 (52130-52298) | |
| 21-162, gnl|mm7|chr11 (78369646-78369479) | |
| 21-162, gnl|Mm7|chr11 (78369502-78369643) | |
| 21-162, gnl|monDom2|scaffold_44 (14563558-14563726) | |
| 21-162, gnl|oryCun1|scaffold_157016 (6993-6826) | |
| 21-162, gnl|panTro1|chr19_random (12780936-12781104) | |
| 21-162, gnl|rheMac2|chr16 (23816649-23816817) | |
| 21-162, gnl|rn3|chr10 (64360765-64360932) | |
| 21-162, gnl|tetNig1|chr16 (3840599-3840438) | |
| 21-162, gnl|xenTro1|scaffold_50 (1333605-1333440) | |
| 291-395, gnl|bosTau2|chr19 (13604055-13603951) | |
| 291-395, gnl|canFam2|chr9 (46144739-46144868) | |
| 291-395, gnl|danRer3|chr15 (12003379-12003495) | |
| 291-395, gnl|dasNov1|scaffold_23589 (9676-9548) | |
| 291-395, gnl|echTel1|scaffold_317923 (50787-50916) | |
| 291-395, gnl|fr1|chrUn (15712585-15712702) | |
| 291-395, gnl|hg17|chr17 (23967240-23967369) | |
| 291-395, gnl|Hg17|chr17 (23967344-23967240) | |
| 291-395, gnl|loxAfr1|scaffold_5483 (51618-51747) | |
| 291-395, gnl|mm7|chr11 (78370620-78370491) | |
| 291-395, gnl|Mm7|chr11 (78370514-78370618) | |
| 291-395, gnl|monDom2|scaffold_44 (14563038-14563165) | |
| 291-395, gnl|oryCun1|scaffold_157016 (8183-8054) | |
| 291-395, gnl|panTro1|chr19_random (12780415-12780544) | |
| 291-395, gnl|rheMac2|chr16 (23816128-23816257) | |
| 291-395, gnl|rn3|chr10 (64359754-64359883) | |
| 291-395, gnl|tetNig1|chr16 (3841234-3841104) | |
| 291-395, gnl|xenTro1|scaffold_50 (1334776-1334658) | |
| 527-1366, gnl|bosTau2|chr19 (13603109-13602274) | |
| 527-1366, gnl|Hg17|chr17 (23966394-23965591) | |
| 527-1366, gnl|Mm7|chr11 (78371376-78372155) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 21-162, gnl|bosTau2|chr19 (13604615-13604474) | |
| 21-162, gnl|canFam2|chr9 (46145248-46145416) | |
| 21-162, gnl|danRer3|chr15 (12006489-12006656) | |
| 21-162, gnl|dasNov1|scaffold_23589 (9215-9046) | |
| 21-162, gnl|echTel1|scaffold_317923 (51293-51460) | |
| 21-162, gnl|fr1|chrUn (15713204-15713365) | |
| 21-162, gnl|galGal2|chr19 (5400779-5400933) | |
| 21-162, gnl|hg17|chr17 (23967761-23967929) | |
| 21-162, gnl|Hg17|chr17 (23967903-23967762) | |
| 21-162, gnl|loxAfr1|scaffold_5483 (52130-52298) | |
| 21-162, gnl|mm7|chr11 (78369646-78369479) | |
| 21-162, gnl|Mm7|chr11 (78369502-78369643) | |
| 21-162, gnl|monDom2|scaffold_44 (14563558-14563726) | |
| 21-162, gnl|oryCun1|scaffold_157016 (6993-6826) | |
| 21-162, gnl|panTro1|chr19_random (12780936-12781104) | |
| 21-162, gnl|rheMac2|chr16 (23816649-23816817) | |
| 21-162, gnl|rn3|chr10 (64360765-64360932) | |
| 21-162, gnl|tetNig1|chr16 (3840599-3840438) | |
| 21-162, gnl|xenTro1|scaffold_50 (1333605-1333440) | |
| 291-395, gnl|bosTau2|chr19 (13604055-13603951) | |
| 291-395, gnl|canFam2|chr9 (46144739-46144868) | |
| 291-395, gnl|danRer3|chr15 (12003379-12003495) | |
| 291-395, gnl|dasNov1|scaffold_23589 (9676-9548) | |
| 291-395, gnl|echTel1|scaffold_317923 (50787-50916) | |
| 291-395, gnl|fr1|chrUn (15712585-15712702) | |
| 291-395, gnl|hg17|chr17 (23967240-23967369) | |
| 291-395, gnl|Hg17|chr17 (23967344-23967240) | |
| 291-395, gnl|loxAfr1|scaffold_5483 (51618-51747) | |
| 291-395, gnl|mm7|chr11 (78370620-78370491) | |
| 291-395, gnl|Mm7|chr11 (78370514-78370618) | |
| 291-395, gnl|monDom2|scaffold_44 (14563038-14563165) | |
| 291-395, gnl|oryCun1|scaffold_157016 (8183-8054) | |
| 291-395, gnl|panTro1|chr19_random (12780415-12780544) | |
| 291-395, gnl|rheMac2|chr16 (23816128-23816257) | |
| 291-395, gnl|rn3|chr10 (64359754-64359883) | |
| 291-395, gnl|tetNig1|chr16 (3841234-3841104) | |
| 291-395, gnl|xenTro1|scaffold_50 (1334776-1334658) | |
| 527-1366, gnl|bosTau2|chr19 (13603109-13602274) | |
| 527-1366, gnl|Hg17|chr17 (23966394-23965591) | |
| 527-1366, gnl|Mm7|chr11 (78371376-78372155) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| pla (0.534688) | |
| nms (0.213858) | |
| cmu (0.186393) | |
| ill (0.175593) | |
| lnt (0.142308) | |
| eep (0.122564) | |
| clu (0.119646) | |
| jca (0.11396) | |
| nbm (0.0993246) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.534688) | |
| nms (0.213858) | |
| cmu (0.186393) | |
| ill (0.175593) | |
| lnt (0.142308) | |
| eep (0.122564) | |
| clu (0.119646) | |
| jca (0.11396) | |
| nbm (0.0993246) |