Ss1.1-Pig4-TMW8055G10.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCCCACAGAAACAACTGTTCTTATGGGGAAATCTGACCCAAACCATGGTTTCTTGAGGAG ATACTACTCGTCAGCGTATCAAATTCAGTGATGACAGAGTGTGCAAGAGTCACCTTCTCA ACTGTTGCCCCCATGATGTCCTGTCTGGAACTAGAATGGATCTTGGCGAATGTCTGAAAG TCCATGACCTGGCTTTACGAGCAGATTATGAAATTGCATCAAAAGAACAAGATTTTTTCT TTGAACTTGATGCTATGGATCATCTGCAGTCATTCATTGCAGACTGTGATCGAAGAACAG AAGTGGCTAAGAAAAGATTAGCAGAAACTCAAGAAGAGATTAGTGCTGAAGTTGCAGCAA AGGCAGAACGTGTTCATGAGTTAAATGAAGAAATTGGTAAATTGTTGGCTAAGGTGGAAC AACTAGGAGCTGAAGGGAACGTGGAGGAATCCCAGAAAGTAATGGATGAAGTAGAGAAAG CCCGGGCAAAGAAAAGAGAAGCAGAGGAAGTTTATCGGAATTCTATGCCAGCTTCCAGTT TCCAACAGCAGAAACTTCGAGTCTGTGAAGTCTGCTCTGCCTATTTAGGTCTTCATGACA ATGACAGACGACTGGCCGATCACTTTGGGGGTAAACTACACCTGGGATTTATTGAAATAA GAGAGAAGCTTGAAGAATTAAAGAGAGTTGTAGCTGAGAAGCAAGAGAAAAGAAACCAGG AACGCCTGAAAAGAAGAGAAGAAAGGGAGAGAGAAGAAAGGGAGAAGCTGAGGAGGTCTC GATCCCATAGCAAGAATCCCAAAAGATCCCGGTCCAGAGAGCATCGCAGACATCGATCTC GTTCCATGTCACGGGAACGGAAAAGGAGAACTCGATCCAAATCCCGGGAGAAACGCCATC GTCACAGATCCCGCTCCAGCAGTCGTAGTCGCAGCCGCAGCCACCAGAGAAGTGGGCACA GTTCTAGAGACAGGAGCAGAGAGCGATCCAGGAGGAGGTACTGAGGTCCATAGGAGGATA TGGAACTGCCTTTATGGTGTAGGATTGGAATGCTAGTGGTTTGAACTTGCATCTGGTGGT CTGTACACATTTGTGTGTGAGTGTTTAACATTTTTTTCCCCTGATTATATTATATGGGTA GTTCAGAAGGAATATCCCTATGAGCCAGAGTAAGGAATTGGAACCAGTATGTGCAGAGAA TATGTGTTTCTCTGCTTAGTGTGTCTTTTGGGGGGGAAAGTACCTTATGGGCAAATAAAT GTGAGCAGTTCCAGACACCAGTCCAGCTAGGCTAGGTGTACAGTAGCCAACTTGATCTGA ACTTTTCTTTGATGAAGCCTAAAACTACATCCATACTTTCTGGTGAACCTATAATATACT TCTGAAAGTACAGTTTTATATAATAAGACACCGGTGTCTTTATTCTTTCTAGTAGGAGTG ATAGTGAATGAATTGTGTTACTTGCGCCTTGGTATTTTTTGAACATTTGTAAAGTGCTGT CTTCCTTTCTAGTCCAAACAACAGCGACTTTGGGAATTTTTTTTAATCTTTCTTTCTCTG ACTCTGTATCCCCTGATACCTCTACCCTCTAATTATAAGAGAAGGAGGTGCAGGGAAGCA ATATAACTTTTGTTTCTGAGGTTCTATTCCCATTATTAATGATTAGCTGATTACAGTTCA AAATATTTCTATTGCATTGTGTGCTGGAGAAATTTAAAATACTGGGAGTTTTGTTTGTCT AATGGTGCCTATTTTAGAGTTGGAAGTTGAACAGCTGTTGCATTACATCGCTTTTTTATG GAAAATCTGAAATCAGAAATGTCTTGATTTCTCTGTTCTATTGAATTGCTACTACATTCA GGATGTTCTGAGAAGGGGGGTGGCGGGGCAGGGACTCTTTCATAAAAGCACTTCTTGTTT TGTGTGTGGAGTATAAAGACTACACCCTTATTGTAAAAAATAAAATGAAAGACTCACCAC CACCATCATTAAACTGTAACTTGTCTAGTAAGTTGTCACTAGAGCTATTGGCTGTGGCCA TTTCTATTCTGTTATATCATTAAATAGTGCCTTACTGTGCAAGGCACCAAAGGAAATAAA TATATACTTACAAAGATTCAAGATGAACTGTTACTCCACCTGGGCCCTTGCTGACTTGAC TGTCTTTAGCCACTGCTGTAGAGAAGGACCAGACCTGCAGAAGGAAATTGGGTTTCCACT TGTTTTGTTTTTCTTCTCATTCAGCAAACGGAAATAAAAATATGGTAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCCCACAGAAACAACTGTTCTTATGGGGAAATCTGACCCAAACCATGGTTTCTTGAGGAG ATACTACTCGTCAGCGTATCAAATTCAGTGATGACAGAGTGTGCAAGAGTCACCTTCTCA ACTGTTGCCCCCATGATGTCCTGTCTGGAACTAGAATGGATCTTGGCGAATGTCTGAAAG TCCATGACCTGGCTTTACGAGCAGATTATGAAATTGCATCAAAAGAACAAGATTTTTTCT TTGAACTTGATGCTATGGATCATCTGCAGTCATTCATTGCAGACTGTGATCGAAGAACAG AAGTGGCTAAGAAAAGATTAGCAGAAACTCAAGAAGAGATTAGTGCTGAAGTTGCAGCAA AGGCAGAACGTGTTCATGAGTTAAATGAAGAAATTGGTAAATTGTTGGCTAAGGTGGAAC AACTAGGAGCTGAAGGGAACGTGGAGGAATCCCAGAAAGTAATGGATGAAGTAGAGAAAG CCCGGGCAAAGAAAAGAGAAGCAGAGGAAGTTTATCGGAATTCTATGCCAGCTTCCAGTT TCCAACAGCAGAAACTTCGAGTCTGTGAAGTCTGCTCTGCCTATTTAGGTCTTCATGACA ATGACAGACGACTGGCCGATCACTTTGGGGGTAAACTACACCTGGGATTTATTGAAATAA GAGAGAAGCTTGAAGAATTAAAGAGAGTTGTAGCTGAGAAGCAAGAGAAAAGAAACCAGG AACGCCTGAAAAGAAGAGAAGAAAGGGAGAGAGAAGAAAGGGAGAAGCTGAGGAGGTCTC GATCCCATAGCAAGAATCCCAAAAGATCCCGGTCCAGAGAGCATCGCAGACATCGATCTC GTTCCATGTCACGGGAACGGAAAAGGAGAACTCGATCCAAATCCCGGGAGAAACGCCATC GTCACAGATCCCGCTCCAGCAGTCGTAGTCGCAGCCGCAGCCACCAGAGAAGTGGGCACA GTTCTAGAGACAGGAGCAGAGAGCGATCCAGGAGGAGGTACTGAGGTCCATAGGAGGATA TGGAACTGCCTTTATGGTGTAGGATTGGAATGCTAGTGGTTTGAACTTGCATCTGGTGGT CTGTACACATTTGTGTGTGAGTGTTTAACATTTTTTTCCCCTGATTATATTATATGGGTA GTTCAGAAGGAATATCCCTATGAGCCAGAGTAAGGAATTGGAACCAGTATGTGCAGAGAA TATGTGTTTCTCTGCTTAGTGTGTCTTTTGGGGGGGAAAGTACCTTATGGGCAAATAAAT GTGAGCAGTTCCAGACACCAGTCCAGCTAGGCTAGGTGTACAGTAGCCAACTTGATCTGA ACTTTTCTTTGATGAAGCCTAAAACTACATCCATACTTTCTGGTGAACCTATAATATACT TCTGAAAGTACAGTTTTATATAATAAGACACCGGTGTCTTTATTCTTTCTAGTAGGAGTG ATAGTGAATGAATTGTGTTACTTGCGCCTTGGTATTTTTTGAACATTTGTAAAGTGCTGT CTTCCTTTCTAGTCCAAACAACAGCGACTTTGGGAATTTTTTTTAATCTTTCTTTCTCTG ACTCTGTATCCCCTGATACCTCTACCCTCTAATTATAAGAGAAGGAGGTGCAGGGAAGCA ATATAACTTTTGTTTCTGAGGTTCTATTCCCATTATTAATGATTAGCTGATTACAGTTCA AAATATTTCTATTGCATTGTGTGCTGGAGAAATTTAAAATACTGGGAGTTTTGTTTGTCT AATGGTGCCTATTTTAGAGTTGGAAGTTGAACAGCTGTTGCATTACATCGCTTTTTTATG GAAAATCTGAAATCAGAAATGTCTTGATTTCTCTGTTCTATTGAATTGCTACTACATTCA GGATGTTCTGAGAAGGGGGGTGGCGGGGCAGGGACTCTTTCATAAAAGCACTTCTTGTTT TGTGTGTGGAGTATAAAGACTACACCCTTATTGTAAAAAATAAAATGAAAGACTCACCAC CACCATCATTAAACTGTAACTTGTCTAGTAAGTTGTCACTAGAGCTATTGGCTGTGGCCA TTTCTATTCTGTTATATCATTAAATAGTGCCTTACTGTGCAAGGCACCAAAGGAAATAAA TATATACTTACAAAGATTCAAGATGAACTGTTACTCCACCTGGGCCCTTGCTGACTTGAC TGTCTTTAGCCACTGCTGTAGAGAAGGACCAGACCTGCAGAAGGAAATTGGGTTTCCACT TGTTTTGTTTTTCTTCTCATTCAGCAAACGGAAATAAAAATATGGTAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 241-2161, + strand, RNAz p=0.939024 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 241-2161, + strand, RNAz p=0.939024 |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 241-363, gnl|bosTau2|chr4 (59630045-59629921) | |
| 241-363, gnl|Hg17|chr7 (138544125-138544249) | |
| 241-363, gnl|Mm7|chr6 (38520088-38520213) | |
| 505-681, gnl|bosTau2|chr25 (2653818-2653642) | |
| 505-681, gnl|canFam2|chr6 (43344077-43343874) | |
| 505-681, gnl|danRer3|chr24 (33394650-33394440) | |
| 505-681, gnl|dasNov1|scaffold_203233 (1088-886) | |
| 505-681, gnl|echTel1|scaffold_224194 (4740-4937) | |
| 505-681, gnl|fr1|chrUn (145482980-145483174) | |
| 505-681, gnl|galGal2|chr14 (14110725-14110926) | |
| 505-681, gnl|hg17|chr16 (189056-189259) | |
| 505-681, gnl|Hg17|chr16 (189240-189064) | |
| 505-681, gnl|loxAfr1|scaffold_135633 (929-727) | |
| 505-681, gnl|mm7|chr17 (24459099-24458901) | |
| 505-681, gnl|Mm7|chr17 (24458912-24459088) | |
| 505-681, gnl|monDom2|scaffold_49 (8256590-8256793) | |
| 505-681, gnl|oryCun1|scaffold_146545 (10908-10712) | |
| 505-681, gnl|panTro1|chr18 (204871-205074) | |
| 505-681, gnl|rheMac2|chr3 (176903646-176903460) | |
| 505-681, gnl|rn3|chr10 (15544596-15544400) | |
| 505-681, gnl|tetNig1|chr2 (4560766-4560579) | |
| 505-681, gnl|xenTro1|scaffold_289 (593980-594182) | |
| 804-1258, gnl|bosTau2|chr4 (59614821-59614377) | |
| 804-1258, gnl|Hg17|chr7 (138559537-138560018) | |
| 804-1258, gnl|Mm7|chr6 (38534201-38534686) | |
| 1261-2266, gnl|bosTau2|chr4 (59610623-59609610) | |
| 1261-2266, gnl|Hg17|chr7 (138564424-138565447) | |
| 1261-2266, gnl|Mm7|chr6 (38539331-38540341) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 241-363, gnl|bosTau2|chr4 (59630045-59629921) | |
| 241-363, gnl|Hg17|chr7 (138544125-138544249) | |
| 241-363, gnl|Mm7|chr6 (38520088-38520213) | |
| 505-681, gnl|bosTau2|chr25 (2653818-2653642) | |
| 505-681, gnl|canFam2|chr6 (43344077-43343874) | |
| 505-681, gnl|danRer3|chr24 (33394650-33394440) | |
| 505-681, gnl|dasNov1|scaffold_203233 (1088-886) | |
| 505-681, gnl|echTel1|scaffold_224194 (4740-4937) | |
| 505-681, gnl|fr1|chrUn (145482980-145483174) | |
| 505-681, gnl|galGal2|chr14 (14110725-14110926) | |
| 505-681, gnl|hg17|chr16 (189056-189259) | |
| 505-681, gnl|Hg17|chr16 (189240-189064) | |
| 505-681, gnl|loxAfr1|scaffold_135633 (929-727) | |
| 505-681, gnl|mm7|chr17 (24459099-24458901) | |
| 505-681, gnl|Mm7|chr17 (24458912-24459088) | |
| 505-681, gnl|monDom2|scaffold_49 (8256590-8256793) | |
| 505-681, gnl|oryCun1|scaffold_146545 (10908-10712) | |
| 505-681, gnl|panTro1|chr18 (204871-205074) | |
| 505-681, gnl|rheMac2|chr3 (176903646-176903460) | |
| 505-681, gnl|rn3|chr10 (15544596-15544400) | |
| 505-681, gnl|tetNig1|chr2 (4560766-4560579) | |
| 505-681, gnl|xenTro1|scaffold_289 (593980-594182) | |
| 804-1258, gnl|bosTau2|chr4 (59614821-59614377) | |
| 804-1258, gnl|Hg17|chr7 (138559537-138560018) | |
| 804-1258, gnl|Mm7|chr6 (38534201-38534686) | |
| 1261-2266, gnl|bosTau2|chr4 (59610623-59609610) | |
| 1261-2266, gnl|Hg17|chr7 (138564424-138565447) | |
| 1261-2266, gnl|Mm7|chr6 (38539331-38540341) |
| Expressed library(ies): 34 entry(ies) | More info |
| Expressed library(ies): 34 entry(ies) | Help | Less info |
| tes (0.623441) | |
| cte (0.58548) | |
| cbe (0.478469) | |
| spl (0.429553) | |
| cmu (0.372787) | |
| fty (0.351679) | |
| lun (0.300978) | |
| ssp (0.271039) | |
| ova (0.258264) | |
| sug (0.254582) | |
| ese (0.253004) | |
| mgp (0.230681) | |
| nms (0.213858) | |
| cty (0.20816) | |
| hea (0.204499) | |
| fcc (0.197785) | |
| aor (0.195274) | |
| nlu (0.191681) | |
| sto (0.179824) | |
| rec (0.17307) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| eli (0.151814) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| csk (0.140746) | |
| che (0.136314) | |
| thg (0.126791) | |
| bla (0.124347) | |
| eep (0.122564) | |
| med (0.116252) | |
| spc (0.113366) | |
| ldo (0.0970026) |
| Expressed library(ies): 34 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.623441) | |
| cte (0.58548) | |
| cbe (0.478469) | |
| spl (0.429553) | |
| cmu (0.372787) | |
| fty (0.351679) | |
| lun (0.300978) | |
| ssp (0.271039) | |
| ova (0.258264) | |
| sug (0.254582) | |
| ese (0.253004) | |
| mgp (0.230681) | |
| nms (0.213858) | |
| cty (0.20816) | |
| hea (0.204499) | |
| fcc (0.197785) | |
| aor (0.195274) | |
| nlu (0.191681) | |
| sto (0.179824) | |
| rec (0.17307) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| eli (0.151814) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| csk (0.140746) | |
| che (0.136314) | |
| thg (0.126791) | |
| bla (0.124347) | |
| eep (0.122564) | |
| med (0.116252) | |
| spc (0.113366) | |
| ldo (0.0970026) |