Ss1.1-Pig4-TMW8055G14.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGTCGAGTCTTGGTTTTCACTCATTATGCCTTTCACAACGGTGATCTTTTTTGTCATGAT CCTGGATTTCTATGTCGATTCCATTTGTTCAGTCAAAATGGATGTTTCCAAATGTGCTCG CTATGGATCCGTTCCCATTTTTATCAGTGCTCTACTTTTTGGAAATTTTTGGACACATCC AATAACAGACCAGCTTCGGGCTATGAACAAAGCAGCACACCAGGAGAGCACAGAACACGT GCTTTCTGGAGGAGTAGTAGTGAGCGCTATATTCTTCATTTTATCTGCCAACATCTTATC ATCTCCTTCTAAAAGAGGACAGAAGGGTACCCTAATTGGATATTCTCCTGAAGGAACACC TCTTTATAACTTCATGGGTGATGCTTTTCAGCACAGCTCCCAGTCAATCCCTAGATTTAT TAAGGACTCACTAAAACAAATTCTTGAAGAGAATGACTCCAGGCAGATCTTTTACTTCTT GTGCTTGAATCTGCTTTTTACCTTTGTGGAATTATTCTATGGCGTGTTGACCAATAGTCT GGGTCTGATCTCAGATGGATTTCACATGCTCTTTGACTGTTCTGCTTTGGTCATGGGACT TTTTGCAGCCCTGATGAGTAGATGGAAAGCAACTCGGATTTTCTCCTATGGGTATGGCCG AATAGAAATTCTCTCTGGATTTATCAATGGGCTTTTTCTAGTGGTAATAGCATTTTTTGT GTTTATGGAGTCAGTGGCTAGATTAATTGATCCTCCGGAATTAGACACGCACATGTTAAC ACCAGTCTCAGTTGGAGGGCTGATAGTAAACCTTATTGGTATCTGTGCCTTTAGCCATGC CCACACCCATACCCATGGAGCTTCTCAAGGAAGCTGTCACTCATCTGATCACAGCCACTC ACACCATATGCATGGACACAGTGACCACGGGCATGGTCACAGCCACGGATCTGCAGGCAG AGGCATGAATGCTAATATGAGGGGTGTATTTCTCCATGTCTTGGCAGACACACTTGGCAG TATTGGTGTGATCGTATCCACCATTCTTATAGAGCAGTTTGGATGGTTCATTGCTGATCC CCTCTGTTCTCTTTTCATCGCTGTATTAATATTTCTCAGTGTTGTCCCACTGATTAAAGA TGCCTGTCAGGTTCTACTTCTGAGACTGCCACCAGAATATGAAAAAGAACTGCATATTGC CTTAGAAAAGATACAGAAAATTGAAGGATTAATATCATACCGAGACCCACATTTTTGGCG TCATTCTGCCAGCGTTGTGGCAGGAACAATTCATATACAGGTGACATCTGATGTGCTGGA ACAAAGAATAGTACAGCAGGTTACAGGAATACTTAAAGATGCAGGAGTAAACAATTTAAC AATTCAAGTGGAAAAAGAAGCATACTTTCAACATATGTCTGGCCTAAGTACTGGATTTCA TGATGTTCTGGCTATGACAAAGCAAATGGAGTCTATGAAATACTACAAAGATGGTACTTA CATCATGTGAGAAAACTTGGAAATTACCCCTGGGGTATGAACAAAGAAGATTAACTGACT CGGTATTTATAATATCGCCAGAAGGAAGAAAACTGCACATAATTGTACAGAAACATTTTG CTATATTTGAGAAAAAAAATTTTAAGCTCCCTACTGATGGATCAAGGAATCTTTTGTAAA GGAAATTTAAATATAGAATGAAGTATTAATTGTACAAATAAAATAACTATTTAAATTATG TGTAAAACAGGAAACTTAAAATTTGAGTGAAAATGAGGTACCACGTCATCTTCGAAAATG AACATATGATGGATTCTAGTGAAGACCAAAATTACTTCCGTGTGTTTACTTTCTGTCAGA AAGCATCTCCACTGTAAATAATGTATTTACATGTTTATTACAAAGACCCAAATGATAAAT TTTTAGTCAGATTTTTTTCATAGGCCTGGGATAAAATAGGAATAAAAGTTTTATATTTAT GGATTTTCTGTATATAAAACTGGTTTCTAATTATAACTTAAACCCGTTAAGTAAAATCTG TATTGCCACTTTAAATGTAGACTAATTATTTGGGAGAAACTTCAACCACTGATATGAGGC AGCAGTGAGAATAGAGAAGGAATAACGAGACAAGTTTTTGATGTATTAAAAAGCCAACCA CTCTGTAAAATAAATTTTTTTACTTTTGGTAAAAAAAAAAAAAAAAAAATTACTTTATTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGTCGAGTCTTGGTTTTCACTCATTATGCCTTTCACAACGGTGATCTTTTTTGTCATGAT CCTGGATTTCTATGTCGATTCCATTTGTTCAGTCAAAATGGATGTTTCCAAATGTGCTCG CTATGGATCCGTTCCCATTTTTATCAGTGCTCTACTTTTTGGAAATTTTTGGACACATCC AATAACAGACCAGCTTCGGGCTATGAACAAAGCAGCACACCAGGAGAGCACAGAACACGT GCTTTCTGGAGGAGTAGTAGTGAGCGCTATATTCTTCATTTTATCTGCCAACATCTTATC ATCTCCTTCTAAAAGAGGACAGAAGGGTACCCTAATTGGATATTCTCCTGAAGGAACACC TCTTTATAACTTCATGGGTGATGCTTTTCAGCACAGCTCCCAGTCAATCCCTAGATTTAT TAAGGACTCACTAAAACAAATTCTTGAAGAGAATGACTCCAGGCAGATCTTTTACTTCTT GTGCTTGAATCTGCTTTTTACCTTTGTGGAATTATTCTATGGCGTGTTGACCAATAGTCT GGGTCTGATCTCAGATGGATTTCACATGCTCTTTGACTGTTCTGCTTTGGTCATGGGACT TTTTGCAGCCCTGATGAGTAGATGGAAAGCAACTCGGATTTTCTCCTATGGGTATGGCCG AATAGAAATTCTCTCTGGATTTATCAATGGGCTTTTTCTAGTGGTAATAGCATTTTTTGT GTTTATGGAGTCAGTGGCTAGATTAATTGATCCTCCGGAATTAGACACGCACATGTTAAC ACCAGTCTCAGTTGGAGGGCTGATAGTAAACCTTATTGGTATCTGTGCCTTTAGCCATGC CCACACCCATACCCATGGAGCTTCTCAAGGAAGCTGTCACTCATCTGATCACAGCCACTC ACACCATATGCATGGACACAGTGACCACGGGCATGGTCACAGCCACGGATCTGCAGGCAG AGGCATGAATGCTAATATGAGGGGTGTATTTCTCCATGTCTTGGCAGACACACTTGGCAG TATTGGTGTGATCGTATCCACCATTCTTATAGAGCAGTTTGGATGGTTCATTGCTGATCC CCTCTGTTCTCTTTTCATCGCTGTATTAATATTTCTCAGTGTTGTCCCACTGATTAAAGA TGCCTGTCAGGTTCTACTTCTGAGACTGCCACCAGAATATGAAAAAGAACTGCATATTGC CTTAGAAAAGATACAGAAAATTGAAGGATTAATATCATACCGAGACCCACATTTTTGGCG TCATTCTGCCAGCGTTGTGGCAGGAACAATTCATATACAGGTGACATCTGATGTGCTGGA ACAAAGAATAGTACAGCAGGTTACAGGAATACTTAAAGATGCAGGAGTAAACAATTTAAC AATTCAAGTGGAAAAAGAAGCATACTTTCAACATATGTCTGGCCTAAGTACTGGATTTCA TGATGTTCTGGCTATGACAAAGCAAATGGAGTCTATGAAATACTACAAAGATGGTACTTA CATCATGTGAGAAAACTTGGAAATTACCCCTGGGGTATGAACAAAGAAGATTAACTGACT CGGTATTTATAATATCGCCAGAAGGAAGAAAACTGCACATAATTGTACAGAAACATTTTG CTATATTTGAGAAAAAAAATTTTAAGCTCCCTACTGATGGATCAAGGAATCTTTTGTAAA GGAAATTTAAATATAGAATGAAGTATTAATTGTACAAATAAAATAACTATTTAAATTATG TGTAAAACAGGAAACTTAAAATTTGAGTGAAAATGAGGTACCACGTCATCTTCGAAAATG AACATATGATGGATTCTAGTGAAGACCAAAATTACTTCCGTGTGTTTACTTTCTGTCAGA AAGCATCTCCACTGTAAATAATGTATTTACATGTTTATTACAAAGACCCAAATGATAAAT TTTTAGTCAGATTTTTTTCATAGGCCTGGGATAAAATAGGAATAAAAGTTTTATATTTAT GGATTTTCTGTATATAAAACTGGTTTCTAATTATAACTTAAACCCGTTAAGTAAAATCTG TATTGCCACTTTAAATGTAGACTAATTATTTGGGAGAAACTTCAACCACTGATATGAGGC AGCAGTGAGAATAGAGAAGGAATAACGAGACAAGTTTTTGATGTATTAAAAAGCCAACCA CTCTGTAAAATAAATTTTTTTACTTTTGGTAAAAAAAAAAAAAAAAAAATTACTTTATTA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 80-199, - strand, RNAz p=0.765823 | |
| 983-1095, - strand, RNAz p=0.653854 | |
| 1022-1914, + strand, RNAz p=0.993434 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 80-199, - strand, RNAz p=0.765823 | |
| 983-1095, - strand, RNAz p=0.653854 | |
| 1022-1914, + strand, RNAz p=0.993434 |
| Aligned organism(s): 70 entry(ies) | More info |
| Aligned organism(s): 70 entry(ies) | Help | Less info |
| 1-287, gnl|bosTau2|chr20 (7334097-7333811) | |
| 1-287, gnl|canFam2|chr2 (57103170-57102884) | |
| 1-287, gnl|canFam2|chr2 (57102855-57103177) | |
| 1-287, gnl|danRer3|chr2 (45715751-45716040) | |
| 1-287, gnl|danRer3|chrUn (101554965-101555291) | |
| 1-287, gnl|dasNov1|scaffold_240217 (359-645) | |
| 1-287, gnl|dasNov1|scaffold_240217 (672-352) | |
| 1-287, gnl|echTel1|scaffold_173010 (5358-5084) | |
| 1-287, gnl|echTel1|scaffold_173010 (5064-5377) | |
| 1-287, gnl|fr1|chrUn (237763299-237763588) | |
| 1-287, gnl|fr1|chrUn (237763606-237763295) | |
| 1-287, gnl|galGal2|chrZ (5128098-5127810) | |
| 1-287, gnl|galGal2|chrZ (5127787-5128102) | |
| 1-287, gnl|hg17|chr19 (51308337-51308618) | |
| 1-287, gnl|hg17|chr5 (68447490-68447805) | |
| 1-287, gnl|Hg17|chr5 (68447514-68447800) | |
| 1-287, gnl|mm7|chr13 (97919284-97919573) | |
| 1-287, gnl|mm7|chr13 (97919595-97919280) | |
| 1-287, gnl|Mm7|chr13 (97919569-97919283) | |
| 1-287, gnl|monDom2|scaffold_27 (35388754-35388465) | |
| 1-287, gnl|monDom2|scaffold_27 (35388449-35388757) | |
| 1-287, gnl|panTro1|chr20 (48632866-48633151) | |
| 1-287, gnl|panTro1|chr4 (47433498-47433183) | |
| 1-287, gnl|rheMac2|chr6 (66969156-66968867) | |
| 1-287, gnl|rheMac2|chr6 (66968845-66969160) | |
| 1-287, gnl|rn3|chr2 (31538116-31538405) | |
| 1-287, gnl|rn3|chr2 (31538424-31538112) | |
| 1-287, gnl|tetNig1|chrUn_random (12329796-12330085) | |
| 1-287, gnl|tetNig1|chrUn_random (12330103-12329792) | |
| 1-287, gnl|xenTro1|scaffold_183 (1044331-1044042) | |
| 1-287, gnl|xenTro1|scaffold_183 (1044018-1044334) | |
| 493-654, gnl|bosTau2|chr20 (7332843-7332682) | |
| 493-654, gnl|canFam2|chr2 (57104266-57104106) | |
| 493-654, gnl|danRer3|chr2 (45714602-45714755) | |
| 493-654, gnl|echTel1|scaffold_173010 (6422-6262) | |
| 493-654, gnl|fr1|chrUn (237760414-237760570) | |
| 493-654, gnl|galGal2|chrZ (5130429-5130272) | |
| 493-654, gnl|hg17|chr19 (51308138-51308299) | |
| 493-654, gnl|Hg17|chr5 (68448821-68448982) | |
| 493-654, gnl|loxAfr1|scaffold_27770 (16245-16086) | |
| 493-654, gnl|mm7|chr13 (97918250-97918410) | |
| 493-654, gnl|Mm7|chr13 (97918409-97918248) | |
| 493-654, gnl|monDom2|scaffold_27 (35392666-35392508) | |
| 493-654, gnl|panTro1|chr20 (48632666-48632827) | |
| 493-654, gnl|rheMac2|chr6 (66970343-66970183) | |
| 493-654, gnl|rn3|chr2 (31537051-31537211) | |
| 493-654, gnl|tetNig1|chrUn_random (12327944-12328100) | |
| 493-654, gnl|xenTro1|scaffold_183 (1046508-1046351) | |
| 983-1214, gnl|bosTau2|chr20 (7328437-7328206) | |
| 983-1214, gnl|canFam2|chr2 (57109549-57109699) | |
| 983-1214, gnl|danRer3|chrUn (101559104-101559254) | |
| 983-1214, gnl|dasNov1|scaffold_147651 (3212-3362) | |
| 983-1214, gnl|echTel1|scaffold_136408 (88-239) | |
| 983-1214, gnl|fr1|chrUn (237759783-237759639) | |
| 983-1214, gnl|galGal2|chrZ (5134128-5134278) | |
| 983-1214, gnl|hg17|chr5 (68454776-68454926) | |
| 983-1214, gnl|Hg17|chr5 (68454781-68455012) | |
| 983-1214, gnl|loxAfr1|scaffold_27269 (68958-69108) | |
| 983-1214, gnl|mm7|chr13 (97912371-97912221) | |
| 983-1214, gnl|Mm7|chr13 (97912364-97912136) | |
| 983-1214, gnl|monDom2|scaffold_27 (35404191-35404341) | |
| 983-1214, gnl|oryCun1|scaffold_206951 (43363-43213) | |
| 983-1214, gnl|panTro1|chr4 (47426208-47426058) | |
| 983-1214, gnl|rheMac2|chr6 (66977401-66977551) | |
| 983-1214, gnl|rn3|chr2 (31532553-31532403) | |
| 983-1214, gnl|tetNig1|chrUn_random (12327312-12327167) | |
| 983-1214, gnl|xenTro1|scaffold_183 (1048065-1048215) | |
| 1332-2220, gnl|bosTau2|chr20 (7326528-7325633) | |
| 1332-2220, gnl|Hg17|chr5 (68461022-68461877) | |
| 1332-2220, gnl|Mm7|chr13 (97909072-97908226) |
| Aligned organism(s): 70 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-287, gnl|bosTau2|chr20 (7334097-7333811) | |
| 1-287, gnl|canFam2|chr2 (57103170-57102884) | |
| 1-287, gnl|canFam2|chr2 (57102855-57103177) | |
| 1-287, gnl|danRer3|chr2 (45715751-45716040) | |
| 1-287, gnl|danRer3|chrUn (101554965-101555291) | |
| 1-287, gnl|dasNov1|scaffold_240217 (359-645) | |
| 1-287, gnl|dasNov1|scaffold_240217 (672-352) | |
| 1-287, gnl|echTel1|scaffold_173010 (5358-5084) | |
| 1-287, gnl|echTel1|scaffold_173010 (5064-5377) | |
| 1-287, gnl|fr1|chrUn (237763299-237763588) | |
| 1-287, gnl|fr1|chrUn (237763606-237763295) | |
| 1-287, gnl|galGal2|chrZ (5128098-5127810) | |
| 1-287, gnl|galGal2|chrZ (5127787-5128102) | |
| 1-287, gnl|hg17|chr19 (51308337-51308618) | |
| 1-287, gnl|hg17|chr5 (68447490-68447805) | |
| 1-287, gnl|Hg17|chr5 (68447514-68447800) | |
| 1-287, gnl|mm7|chr13 (97919284-97919573) | |
| 1-287, gnl|mm7|chr13 (97919595-97919280) | |
| 1-287, gnl|Mm7|chr13 (97919569-97919283) | |
| 1-287, gnl|monDom2|scaffold_27 (35388754-35388465) | |
| 1-287, gnl|monDom2|scaffold_27 (35388449-35388757) | |
| 1-287, gnl|panTro1|chr20 (48632866-48633151) | |
| 1-287, gnl|panTro1|chr4 (47433498-47433183) | |
| 1-287, gnl|rheMac2|chr6 (66969156-66968867) | |
| 1-287, gnl|rheMac2|chr6 (66968845-66969160) | |
| 1-287, gnl|rn3|chr2 (31538116-31538405) | |
| 1-287, gnl|rn3|chr2 (31538424-31538112) | |
| 1-287, gnl|tetNig1|chrUn_random (12329796-12330085) | |
| 1-287, gnl|tetNig1|chrUn_random (12330103-12329792) | |
| 1-287, gnl|xenTro1|scaffold_183 (1044331-1044042) | |
| 1-287, gnl|xenTro1|scaffold_183 (1044018-1044334) | |
| 493-654, gnl|bosTau2|chr20 (7332843-7332682) | |
| 493-654, gnl|canFam2|chr2 (57104266-57104106) | |
| 493-654, gnl|danRer3|chr2 (45714602-45714755) | |
| 493-654, gnl|echTel1|scaffold_173010 (6422-6262) | |
| 493-654, gnl|fr1|chrUn (237760414-237760570) | |
| 493-654, gnl|galGal2|chrZ (5130429-5130272) | |
| 493-654, gnl|hg17|chr19 (51308138-51308299) | |
| 493-654, gnl|Hg17|chr5 (68448821-68448982) | |
| 493-654, gnl|loxAfr1|scaffold_27770 (16245-16086) | |
| 493-654, gnl|mm7|chr13 (97918250-97918410) | |
| 493-654, gnl|Mm7|chr13 (97918409-97918248) | |
| 493-654, gnl|monDom2|scaffold_27 (35392666-35392508) | |
| 493-654, gnl|panTro1|chr20 (48632666-48632827) | |
| 493-654, gnl|rheMac2|chr6 (66970343-66970183) | |
| 493-654, gnl|rn3|chr2 (31537051-31537211) | |
| 493-654, gnl|tetNig1|chrUn_random (12327944-12328100) | |
| 493-654, gnl|xenTro1|scaffold_183 (1046508-1046351) | |
| 983-1214, gnl|bosTau2|chr20 (7328437-7328206) | |
| 983-1214, gnl|canFam2|chr2 (57109549-57109699) | |
| 983-1214, gnl|danRer3|chrUn (101559104-101559254) | |
| 983-1214, gnl|dasNov1|scaffold_147651 (3212-3362) | |
| 983-1214, gnl|echTel1|scaffold_136408 (88-239) | |
| 983-1214, gnl|fr1|chrUn (237759783-237759639) | |
| 983-1214, gnl|galGal2|chrZ (5134128-5134278) | |
| 983-1214, gnl|hg17|chr5 (68454776-68454926) | |
| 983-1214, gnl|Hg17|chr5 (68454781-68455012) | |
| 983-1214, gnl|loxAfr1|scaffold_27269 (68958-69108) | |
| 983-1214, gnl|mm7|chr13 (97912371-97912221) | |
| 983-1214, gnl|Mm7|chr13 (97912364-97912136) | |
| 983-1214, gnl|monDom2|scaffold_27 (35404191-35404341) | |
| 983-1214, gnl|oryCun1|scaffold_206951 (43363-43213) | |
| 983-1214, gnl|panTro1|chr4 (47426208-47426058) | |
| 983-1214, gnl|rheMac2|chr6 (66977401-66977551) | |
| 983-1214, gnl|rn3|chr2 (31532553-31532403) | |
| 983-1214, gnl|tetNig1|chrUn_random (12327312-12327167) | |
| 983-1214, gnl|xenTro1|scaffold_183 (1048065-1048215) | |
| 1332-2220, gnl|bosTau2|chr20 (7326528-7325633) | |
| 1332-2220, gnl|Hg17|chr5 (68461022-68461877) | |
| 1332-2220, gnl|Mm7|chr13 (97909072-97908226) |
| Expressed library(ies): 12 entry(ies) | More info |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
| mgp (0.461361) | |
| spl (0.429553) | |
| lin (0.291206) | |
| kid (0.259471) | |
| ret (0.257467) | |
| tra (0.246184) | |
| nms (0.213858) | |
| bfe (0.149858) | |
| fat (0.147427) | |
| ski (0.146735) | |
| ova (0.129132) | |
| bla (0.124347) |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mgp (0.461361) | |
| spl (0.429553) | |
| lin (0.291206) | |
| kid (0.259471) | |
| ret (0.257467) | |
| tra (0.246184) | |
| nms (0.213858) | |
| bfe (0.149858) | |
| fat (0.147427) | |
| ski (0.146735) | |
| ova (0.129132) | |
| bla (0.124347) |