Non-Coding RNA Search

Ss1.1-Pig4-TMW8055G15.3

Sequence:


               
               CTTTTCATGTGGCAGCAGTCGTGTGTTGATTGGCTAGGTTTCTCCCTTGTGTTTTATACA
AAAATGTGATTGAGTTCCCGTTGTGGTTCAGTGGTAATGAACCCGACTAGTATCCATGAG
GATGTGGGTTCCATCCCTGGCCTTGCTCAGTGGGTTAGGATCTAGCGTTGCCATGAGCTG
CAGCATAGGCTGCAGATTCGGCTTAGATCTGGCATTGCTGTGGCTGTGGTGGAGGCCAGC
AGCTGTAGCTCCAATTCGACCTCTAGCCTGGGAACTTCCATATGCCGCAGGTGCGGCCCT
AAAAGGAAAGAAAATGGAATTGATGAACTTTTTTTTTAATTTGTTTCAGAACTTCTGTTT
GTGCTGTATGTTGGCAATATTTTGCTCACACTTTGAAATTTTTAAAATTTCAATTGCTTA
TATATTCAGAAAAATCTTAAAACAGAAATTGGAAATTTACTGCAATCATGATTAATACCA
TATTATATTGAATTTTAGATGCTGTCTATTTTGTAGTATGCACCAATGATTTTACATACC
ACTAAAGAAAAAAAATGCCAATTAAACCATCATATGCCATTGATTATGAGATGCATCCCA
ATTTCAGAGATGTTAGAGTATGAAAATGTACGTTTAGAGTTGATGAAATAGGATAGCGGA
CTTTGTTTAATTATCTAATGAGCACTTACTGTGTGGCAGGCCCTGTGCTAAGCACTGCAC
TGGTGACGACGTTTTCTCACCCCCACTTTGAAGATGTGGGATTTGAGGCTCACGGAAATA
AACGGCTTGCATTTATCTAGCAGGTAGAAAGGGGCATAACTAGGGTACGAACCTGGTCTG
GCTGACCCCAGAGCCCACACTCTTACCTAGAATGGAAATTTATCAGAGTTTTCTGCTTTT
GGCTTAAAATTCAAATTTTCAGTGGTCTTATTGATACAGTGACATTCAGTAATTTGTACA
ATATTTTAAAAATTCTTTTTCTCTGTCAGTTTCTAAGTAACTATTGTTAAGATTTAAGTT
AATGTACCAGTTAATGGTCCATCAGAAAATTATATTTTTCTGCCTGGAAGTCTTCATTAA
AAATGGAAATTCTTTAATGTTTTATAATACAACAGTATCAAAACAAAACTCTCATTTTTA
AAAACTTATTTTATTATGGAAATTTTCAAAAATAAAGAGAACAGTATAAAGAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTTCATGTGGCAGCAGTCGTGTGTTGATTGGCTAGGTTTCTCCCTTGTGTTTTATACA
AAAATGTGATTGAGTTCCCGTTGTGGTTCAGTGGTAATGAACCCGACTAGTATCCATGAG
GATGTGGGTTCCATCCCTGGCCTTGCTCAGTGGGTTAGGATCTAGCGTTGCCATGAGCTG
CAGCATAGGCTGCAGATTCGGCTTAGATCTGGCATTGCTGTGGCTGTGGTGGAGGCCAGC
AGCTGTAGCTCCAATTCGACCTCTAGCCTGGGAACTTCCATATGCCGCAGGTGCGGCCCT
AAAAGGAAAGAAAATGGAATTGATGAACTTTTTTTTTAATTTGTTTCAGAACTTCTGTTT
GTGCTGTATGTTGGCAATATTTTGCTCACACTTTGAAATTTTTAAAATTTCAATTGCTTA
TATATTCAGAAAAATCTTAAAACAGAAATTGGAAATTTACTGCAATCATGATTAATACCA
TATTATATTGAATTTTAGATGCTGTCTATTTTGTAGTATGCACCAATGATTTTACATACC
ACTAAAGAAAAAAAATGCCAATTAAACCATCATATGCCATTGATTATGAGATGCATCCCA
ATTTCAGAGATGTTAGAGTATGAAAATGTACGTTTAGAGTTGATGAAATAGGATAGCGGA
CTTTGTTTAATTATCTAATGAGCACTTACTGTGTGGCAGGCCCTGTGCTAAGCACTGCAC
TGGTGACGACGTTTTCTCACCCCCACTTTGAAGATGTGGGATTTGAGGCTCACGGAAATA
AACGGCTTGCATTTATCTAGCAGGTAGAAAGGGGCATAACTAGGGTACGAACCTGGTCTG
GCTGACCCCAGAGCCCACACTCTTACCTAGAATGGAAATTTATCAGAGTTTTCTGCTTTT
GGCTTAAAATTCAAATTTTCAGTGGTCTTATTGATACAGTGACATTCAGTAATTTGTACA
ATATTTTAAAAATTCTTTTTCTCTGTCAGTTTCTAAGTAACTATTGTTAAGATTTAAGTT
AATGTACCAGTTAATGGTCCATCAGAAAATTATATTTTTCTGCCTGGAAGTCTTCATTAA
AAATGGAAATTCTTTAATGTTTTATAATACAACAGTATCAAAACAAAACTCTCATTTTTA
AAAACTTATTTTATTATGGAAATTTTCAAAAATAAAGAGAACAGTATAAAGAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               311-1193, gnl|bosTau2|chr4 (43089057-43088193)
               

               
               311-1193, gnl|Hg17|chr7 (44647102-44645316)
               

               
               311-1193, gnl|Mm7|chr11 (6380172-6379232)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               311-1193, gnl|bosTau2|chr4 (43089057-43088193)
               

               
               311-1193, gnl|Hg17|chr7 (44647102-44645316)
               

               
               311-1193, gnl|Mm7|chr11 (6380172-6379232)

Expressed library(ies): 53 entry(ies)

More info

Expressed library(ies): 53 entry(ies)

Help | Less info


               
               sto (1.61841)
               

               
               lin (1.16482)
               

               
               cmu (1.11836)
               

               
               lyg (1.06482)
               

               
               liv (1.02399)
               

               
               bfe (0.899146)
               

               
               thg (0.760746)
               

               
               cbe (0.717703)
               

               
               rec (0.692281)
               

               
               vin (0.665115)
               

               
               aor (0.585823)
               

               
               spl (0.572738)
               

               
               csk (0.562984)
               

               
               sin (0.524843)
               

               
               pro (0.512033)
               

               
               mcp (0.511945)
               

               
               med (0.465008)
               

               
               che (0.408942)
               

               
               ssp (0.406559)
               

               
               ste (0.405625)
               

               
               ova (0.387397)
               

               
               bla (0.373042)
               

               
               tra (0.369276)
               

               
               mgm (0.360685)
               

               
               gul (0.355177)
               

               
               fty (0.351679)
               

               
               cut (0.339847)
               

               
               nco (0.323468)
               

               
               mga (0.32041)
               

               
               fco (0.314416)
               

               
               cty (0.31224)
               

               
               ski (0.29347)
               

               
               lnt (0.284616)
               

               
               spc (0.226732)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               sag (0.182715)
               

               
               ill (0.175593)
               

               
               eye (0.170503)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               pty (0.142714)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

Expressed library(ies): 53 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sto (1.61841)
               

               
               lin (1.16482)
               

               
               cmu (1.11836)
               

               
               lyg (1.06482)
               

               
               liv (1.02399)
               

               
               bfe (0.899146)
               

               
               thg (0.760746)
               

               
               cbe (0.717703)
               

               
               rec (0.692281)
               

               
               vin (0.665115)
               

               
               aor (0.585823)
               

               
               spl (0.572738)
               

               
               csk (0.562984)
               

               
               sin (0.524843)
               

               
               pro (0.512033)
               

               
               mcp (0.511945)
               

               
               med (0.465008)
               

               
               che (0.408942)
               

               
               ssp (0.406559)
               

               
               ste (0.405625)
               

               
               ova (0.387397)
               

               
               bla (0.373042)
               

               
               tra (0.369276)
               

               
               mgm (0.360685)
               

               
               gul (0.355177)
               

               
               fty (0.351679)
               

               
               cut (0.339847)
               

               
               nco (0.323468)
               

               
               mga (0.32041)
               

               
               fco (0.314416)
               

               
               cty (0.31224)
               

               
               ski (0.29347)
               

               
               lnt (0.284616)
               

               
               spc (0.226732)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               sag (0.182715)
               

               
               ill (0.175593)
               

               
               eye (0.170503)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               pty (0.142714)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

	311-1193, gnl\|bosTau2\|chr4 (43089057-43088193)
	311-1193, gnl\|Hg17\|chr7 (44647102-44645316)
	311-1193, gnl\|Mm7\|chr11 (6380172-6379232)

	sto (1.61841)
	lin (1.16482)
	cmu (1.11836)
	lyg (1.06482)
	liv (1.02399)
	bfe (0.899146)
	thg (0.760746)
	cbe (0.717703)
	rec (0.692281)
	vin (0.665115)
	aor (0.585823)
	spl (0.572738)
	csk (0.562984)
	sin (0.524843)
	pro (0.512033)
	mcp (0.511945)
	med (0.465008)
	che (0.408942)
	ssp (0.406559)
	ste (0.405625)
	ova (0.387397)
	bla (0.373042)
	tra (0.369276)
	mgm (0.360685)
	gul (0.355177)
	fty (0.351679)
	cut (0.339847)
	nco (0.323468)
	mga (0.32041)
	fco (0.314416)
	cty (0.31224)
	ski (0.29347)
	lnt (0.284616)
	spc (0.226732)
	tes (0.207814)
	hea (0.204499)
	sag (0.182715)
	ill (0.175593)
	eye (0.170503)
	tbr (0.154178)
	lun (0.150489)
	isp (0.150376)
	pty (0.142714)
	pla (0.133672)
	nmm (0.132802)
	ret (0.128733)
	sug (0.127291)
	ese (0.126502)
	pgl (0.118483)
	ecc (0.115035)
	cbl (0.114797)
	jca (0.11396)
	jej (0.0989218)