Non-Coding RNA Search

Ss1.1-Pig4-TMW8055G17.3

Sequence:


               
               TCTCCCATAGAAAAATATAAACTGCTTTTCCAAGGTACAGTTGTGATAATGAGAACAGAT
TTATAACTGGGCATTTTTAATTTTATAAATATGAGAAATATTGCAAACCAGGAGTGAATT
TCAGATGAGATTAAATCGGCTTTCTTTCTTAGTCACTGAATCGCCATGCCAAGGAGCAGA
AAACGGCTGGAAGAATCTTTTCCACATTCACTTGTGGGCTGCTCAGAATCTTTCCTGGGC
ATTCATAGCCCTTACTTTAGTGTTCATGCATCATTACGGCAAAGGAGATCCCTGCGTCCC
AGGCTTAGTTTTTACAAATGATTCACAGAATAGACATAACCTGCTAAGGGAAATGATGAA
GAATGGCTTAGAGTAAGTTTGACAGTGTATTCTGAACCTACAGATCATTAATAAGATTTA
GACTCAATCATACACATGGATTCCTTTGTAATCATTTTTCTTTAACCGAGGATATCTTGT
TTCTGCTTCATAGGGTGCTTTGAAATATAAAATGAAAACTTATTTATACTGTTTTTACAA
AGGTCAAAAAGGAAACACACAAAAATCACTTTTCTGCAACTGGTAAACCACATAGACTGG
ACTCTTAACCTCTTAGTGCCTCAGTCTTTCTTCGGGGTATAATATTTGAGATACACTAGT
TTCACAGGGGTCTTGGAGGGGTGTGTAAGCTAGCAGGCGTATGCTTCCATATGAATAAGA
CATACCCAACTAATGTAAATATAAGTGTCTCTCTCCCACCTTGCACATGTAGACTAAGAA
CACTGTCATTTAGGTCCTGGAAGGCTTTGTTTGGAATTATGCTTCCTGTATACCTTTTAA
AACTCCCTGCTCATGTAAATGTACCTTGTACTTTAAAGATTTCTCTGATTCACAGACTAA
GTATCAAACAATTTTTAAATATCCTTGGTATGTATGATGTTGGGTTTAGCATCATGTGTT
CGGAGTGTTTTCAATAAGAACGTAATCCATCCGTAATATAGAGGGTGGTCCTTTGTTTAC
CTGAAGAAAAAAGTGTAAGAAGTCAATTTGCTTTTCCTAAGACTCTTTTTCCTTTTTTTT
CTCTTACATGTAACTGGATTTTTTTTTAAATCCCATCTTGATTAAAATGTATCTGTCTAC
AGGGATCTACTAATATTTGCTTTTTAAAAGCTGTCCTCTATTTAGGGGAACAGAGTGAAG
CAAGTAACTGAATTATATGTAAAAATAAAATTTAGACCTGTGGATCGGGGTTCTTTTCAA
AACTTAGCTGTCAATATGGTATCAGAAAACAGTGGCTTTTCTCTTAATATATAAATAAAT
AAGATGCAAATTAAGAATGTAAGCTGTTGTGAATTATTACAAGAAGTTGGGGGGTAACTT
ACTTCTGGGAATAACCATTTGTATCCTATTCCAAAGTCTTATTTTATAGTTTGAAAAGCA
CTTTGCACACAGTTCTTGTATATACAAGTAAAGATGTAATTATAGGATGTAGTGTCACAG
CTTTGTTTAACAAGAACCTCATTTAAAATTTTAAATGGACAGCTATGGTATTTTTTTAAT
GATCTACTTCTTTTCTGTTCTTTATTGTAAAACTAAATTAAAAATAAAAGGTTAATGAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTCCCATAGAAAAATATAAACTGCTTTTCCAAGGTACAGTTGTGATAATGAGAACAGAT
TTATAACTGGGCATTTTTAATTTTATAAATATGAGAAATATTGCAAACCAGGAGTGAATT
TCAGATGAGATTAAATCGGCTTTCTTTCTTAGTCACTGAATCGCCATGCCAAGGAGCAGA
AAACGGCTGGAAGAATCTTTTCCACATTCACTTGTGGGCTGCTCAGAATCTTTCCTGGGC
ATTCATAGCCCTTACTTTAGTGTTCATGCATCATTACGGCAAAGGAGATCCCTGCGTCCC
AGGCTTAGTTTTTACAAATGATTCACAGAATAGACATAACCTGCTAAGGGAAATGATGAA
GAATGGCTTAGAGTAAGTTTGACAGTGTATTCTGAACCTACAGATCATTAATAAGATTTA
GACTCAATCATACACATGGATTCCTTTGTAATCATTTTTCTTTAACCGAGGATATCTTGT
TTCTGCTTCATAGGGTGCTTTGAAATATAAAATGAAAACTTATTTATACTGTTTTTACAA
AGGTCAAAAAGGAAACACACAAAAATCACTTTTCTGCAACTGGTAAACCACATAGACTGG
ACTCTTAACCTCTTAGTGCCTCAGTCTTTCTTCGGGGTATAATATTTGAGATACACTAGT
TTCACAGGGGTCTTGGAGGGGTGTGTAAGCTAGCAGGCGTATGCTTCCATATGAATAAGA
CATACCCAACTAATGTAAATATAAGTGTCTCTCTCCCACCTTGCACATGTAGACTAAGAA
CACTGTCATTTAGGTCCTGGAAGGCTTTGTTTGGAATTATGCTTCCTGTATACCTTTTAA
AACTCCCTGCTCATGTAAATGTACCTTGTACTTTAAAGATTTCTCTGATTCACAGACTAA
GTATCAAACAATTTTTAAATATCCTTGGTATGTATGATGTTGGGTTTAGCATCATGTGTT
CGGAGTGTTTTCAATAAGAACGTAATCCATCCGTAATATAGAGGGTGGTCCTTTGTTTAC
CTGAAGAAAAAAGTGTAAGAAGTCAATTTGCTTTTCCTAAGACTCTTTTTCCTTTTTTTT
CTCTTACATGTAACTGGATTTTTTTTTAAATCCCATCTTGATTAAAATGTATCTGTCTAC
AGGGATCTACTAATATTTGCTTTTTAAAAGCTGTCCTCTATTTAGGGGAACAGAGTGAAG
CAAGTAACTGAATTATATGTAAAAATAAAATTTAGACCTGTGGATCGGGGTTCTTTTCAA
AACTTAGCTGTCAATATGGTATCAGAAAACAGTGGCTTTTCTCTTAATATATAAATAAAT
AAGATGCAAATTAAGAATGTAAGCTGTTGTGAATTATTACAAGAAGTTGGGGGGTAACTT
ACTTCTGGGAATAACCATTTGTATCCTATTCCAAAGTCTTATTTTATAGTTTGAAAAGCA
CTTTGCACACAGTTCTTGTATATACAAGTAAAGATGTAATTATAGGATGTAGTGTCACAG
CTTTGTTTAACAAGAACCTCATTTAAAATTTTAAATGGACAGCTATGGTATTTTTTTAAT
GATCTACTTCTTTTCTGTTCTTTATTGTAAAACTAAATTAAAAATAAAAGGTTAATGAGA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-1620, gnl|bosTau2|chr13 (9394953-9396589)
               

               
               1-1620, gnl|Hg17|chr10 (27526049-27524154)
               

               
               1-1620, gnl|Mm7|chr2 (23120130-23121817)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1620, gnl|bosTau2|chr13 (9394953-9396589)
               

               
               1-1620, gnl|Hg17|chr10 (27526049-27524154)
               

               
               1-1620, gnl|Mm7|chr2 (23120130-23121817)

Expressed library(ies): 16 entry(ies)

More info

Expressed library(ies): 16 entry(ies)

Help | Less info


               
               lun (0.451467)
               

               
               kid (0.389206)
               

               
               pla (0.267344)
               

               
               ece (0.229305)
               

               
               cty (0.20816)
               

               
               ldo (0.194005)
               

               
               duo (0.172801)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               spl (0.143184)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               eru (0.120048)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lun (0.451467)
               

               
               kid (0.389206)
               

               
               pla (0.267344)
               

               
               ece (0.229305)
               

               
               cty (0.20816)
               

               
               ldo (0.194005)
               

               
               duo (0.172801)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               spl (0.143184)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               eru (0.120048)

	1-1620, gnl\|bosTau2\|chr13 (9394953-9396589)
	1-1620, gnl\|Hg17\|chr10 (27526049-27524154)
	1-1620, gnl\|Mm7\|chr2 (23120130-23121817)

	lun (0.451467)
	kid (0.389206)
	pla (0.267344)
	ece (0.229305)
	cty (0.20816)
	ldo (0.194005)
	duo (0.172801)
	fhi (0.169578)
	mga (0.160205)
	fco (0.157208)
	spl (0.143184)
	ste (0.135208)
	nmm (0.132802)
	ret (0.128733)
	tra (0.123092)
	eru (0.120048)