Non-Coding RNA Search

Ss1.1-Pig4-TMW8055G18.5

Sequence:


               
               ACGTGAACTGCCTGTGCTCTGGCACCAGTGTCTCCTGACCTTGGTCCAGCGCTACAAGGC
GGACCTGGCCACAGAACAGAAGGAGGCCCTCCTAGAACTGCTCCGGGTGCAGCCCCATCC
CCAGCTGTCCCCCGAGATCAGGCGTGAGCTTCAGAGTGCTGTCCCCCGAGATGTAGAGGA
CGTCCCCGTCACCATGGAGTGAGGAAGCAGCACTCGTCCTGGCCTGAGGGCTCTGGGAAG
ACACCGAGGAGCCCTGCTGGTGACTAAAGGTGACACTAAGCTTTTTACAGCTGAAGACCC
AGGTCATAGGCCTCTGGTGCCTCGGTTCTGACAGGGAGGATGGGGCCTGGCTGGCTCCCG
CTTCCATTCTAGGCCTGCATCCCTGCCCAGTTCTGCCGCCTGACCCAGATGCCACAGCCC
AGTGCTCCCGCCTCCCAGCCGAGGCTTGGAGTCGGTGCCTTATCTTGCGCTGTTGCGTTA
GGTCACTGGACTGTGAATAAAAGCAAAAGGCAGGTATTTATTGAGCTCCAGTGTTTGGAT
GTGATGGCTAGAGATCTGTCTGCTTTTACTCTTCAGCTGGAGGTGGGCACCGCTTCCCCG
TTCCTGCGTAGGAGTGGATTCTTACCCAGTCTTCACGGGACCCTCTGCCTCTTCACGCTA
GGAGTCTGTTTCTCTAGGCTATACCCACACTGCCGGCCCCTAGAGGGCATGTCCTCTGCT
TCCCCCGACACAGGCCACTCGGGGAGAAGGCCAGCAGCCAGGAAATTGTTCAGAAGATGG
TCTCAGCTGTGGAAGGAAGAGCTGAGAGGAGGCACCTAGAGGAGGGTGGAGGTACAGGGC
AAGGAAGGTTGGGCCAGGAATGATTAGATCCAGGGTCACCACCAGACCAGCTCCCTTCTA
CCTTCTTAGTTAATGAGCACTTTTGACCAGGGGTTGGCAAGCCAAAGTCACGTGCCCATT
TTCTCACAGCCCGTGAGCTAAGAATGAGTTTTACATATTTTTTAATGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACGTGAACTGCCTGTGCTCTGGCACCAGTGTCTCCTGACCTTGGTCCAGCGCTACAAGGC
GGACCTGGCCACAGAACAGAAGGAGGCCCTCCTAGAACTGCTCCGGGTGCAGCCCCATCC
CCAGCTGTCCCCCGAGATCAGGCGTGAGCTTCAGAGTGCTGTCCCCCGAGATGTAGAGGA
CGTCCCCGTCACCATGGAGTGAGGAAGCAGCACTCGTCCTGGCCTGAGGGCTCTGGGAAG
ACACCGAGGAGCCCTGCTGGTGACTAAAGGTGACACTAAGCTTTTTACAGCTGAAGACCC
AGGTCATAGGCCTCTGGTGCCTCGGTTCTGACAGGGAGGATGGGGCCTGGCTGGCTCCCG
CTTCCATTCTAGGCCTGCATCCCTGCCCAGTTCTGCCGCCTGACCCAGATGCCACAGCCC
AGTGCTCCCGCCTCCCAGCCGAGGCTTGGAGTCGGTGCCTTATCTTGCGCTGTTGCGTTA
GGTCACTGGACTGTGAATAAAAGCAAAAGGCAGGTATTTATTGAGCTCCAGTGTTTGGAT
GTGATGGCTAGAGATCTGTCTGCTTTTACTCTTCAGCTGGAGGTGGGCACCGCTTCCCCG
TTCCTGCGTAGGAGTGGATTCTTACCCAGTCTTCACGGGACCCTCTGCCTCTTCACGCTA
GGAGTCTGTTTCTCTAGGCTATACCCACACTGCCGGCCCCTAGAGGGCATGTCCTCTGCT
TCCCCCGACACAGGCCACTCGGGGAGAAGGCCAGCAGCCAGGAAATTGTTCAGAAGATGG
TCTCAGCTGTGGAAGGAAGAGCTGAGAGGAGGCACCTAGAGGAGGGTGGAGGTACAGGGC
AAGGAAGGTTGGGCCAGGAATGATTAGATCCAGGGTCACCACCAGACCAGCTCCCTTCTA
CCTTCTTAGTTAATGAGCACTTTTGACCAGGGGTTGGCAAGCCAAAGTCACGTGCCCATT
TTCTCACAGCCCGTGAGCTAAGAATGAGTTTTACATATTTTTTAATGT

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               2-120, - strand, RNAz p=0.55461
               

               
               201-306, - strand, RNAz p=0.587337
               

               
               576-768, + strand, RNAz p=0.777564

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-120, - strand, RNAz p=0.55461
               

               
               201-306, - strand, RNAz p=0.587337
               

               
               576-768, + strand, RNAz p=0.777564

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               2-999, gnl|bosTau2|chr23 (15417099-15418107)
               

               
               2-999, gnl|Hg17|chr6 (42008222-42009849)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-999, gnl|bosTau2|chr23 (15417099-15418107)
               

               
               2-999, gnl|Hg17|chr6 (42008222-42009849)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               med (0.232504)
               

               
               ton (0.1755)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (0.232504)
               

               
               ton (0.1755)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)

	2-120, - strand, RNAz p=0.55461
	201-306, - strand, RNAz p=0.587337
	576-768, + strand, RNAz p=0.777564

	2-999, gnl\|bosTau2\|chr23 (15417099-15418107)
	2-999, gnl\|Hg17\|chr6 (42008222-42009849)