Non-Coding RNA Search

Ss1.1-Pig4-TMW8055H04.5.5

Sequence:


               
               TCACAACTACTGCTCAGTGAACAATGGTGGCTGCACCCACCTCTGCTTGGCCACCCCAGG
AAGCAGGACCTGCCGTTGCCCTGACAACACCCTGGGCGTTGACTGTATCGAGCAGAAATG
AAGACAAGTATTTCACAGCAACACCCTACTTGAAAGGGTCCAGAATGAAGACTATCTGAC
TTTGTGGCTGTGTGGCCCTCAGACCCAGGTCCAACCTCAGCCTGAACCTCAGCAGCACTG
CCCTCACAGATCCCCACAACATAGGCCCTGGGCTTCTGGAATGGGAAAGCCTCTACCCCT
ACAGAAAGACAGAAATCCTCCCTGACCCCAACCCTCAGACTTATATAGCCCTGAGTGAGG
ATCGTGTGCCCCATCCTGGTACCCTGGACCCTTTCTTCAACCTTAACATCCCGGTGATGA
GCAGAACCTGCCCTGTGGCCTTATGAGCTCAGCCTCACTTGGAGACACCCATCATCCCAT
CAGGGGCTGGATACCAGCTAGGATTGTCCAGGCAAGGCTGTGAGCAGAGGAGGGAGTTAG
CCCTCCCATGTTTTTTCTCTTGGTGCTCTGATTTCCCTCTTTAAACTCTTAGCGTTTTAC
CCCTGAGATCTGTACCCCCTGCATCCTGCCCAATGCCCACATACTAGTGAGAAGGCCCTG
CCTTTTGATCAGAACCCACCCTGTCCAAGGGATATGTGGGTATTTGGTGGATGATACTGA
GCAGCCCCTCCCAGGTAAGTTATTGGCATTTCAGCAGTAGGCTTTTGTAGTCAAAGGCTT
AAATCAAAGGAGTGTCCAGTGGTAGGACTTACAGGGTGTAAAGTCTGATGTTTGAGGATG
AGGATTCTATTGATGTGCCTTAAGTTATACCAAAGATTACCGCATTACTCCTCCTCTTTG
TCCAAAGCACTTGGATCCTAGGGTCTAGTCTCTTGGGCAGCACAGCCTCGCTGCTGGCAC
CTGTGTCCAGCCTCTGCATGGACACCCATCTGAGACACGGGCTGGGGCTGGTTCCAGGGA
TGACCCCCCTATAGTTCCTCACCTTCGGCTTCCACACATAGGAGACCCTCTACGGTCAAC
GTGAGCTTTCTTCTCCTTTGTTTCTCCTCTGTCCATGGCCCTTGCTGGGTATGTTCTCAT
CCAGAGACACAATCCAGGAGGGCCAAACAGAATATTTATACTAGGGGTCCAGACCCTTTA
TTGATCATTGGTGCCATTAAAAGGACCATTGCCCCATTTCATTTTCTGTTTCTACGGTCT
ATTCAGAAAACATCTCCTGATGTTTATTATTATTAACATCAGTGCTATTATTATGATTAT
TATTATTTGGTCAGCTACTTCCCAGAGTCCTAAAACAGTAGAAATTTGGGATTGAAAGCT
TAGAATTGGAAGCTTGAGTCAGTCAAGATCAGGGGAGGGGCGTAGAGAAGACGCAGTGCA
AAGTCTCAAAGAGCTTGACTTCAGGACGTGGAAGAATTTGCCTAGTTTTCTCCTTACGGA
AGAGATGCCTCTTCTCATCTGTGAACCTCAGGACACTCAGCTCCTCTCACCGCCCCCCTC
TGCAGCCTATGGGAATCGGAGTCAAGAGAGCCTTTCCTTGAATAATTAGAGTTTGTTTTG
AGAGGCAGAGATATCCCCAAGAGTCGCCAGGTTTGGGGAACACATGGGTCTTTTATCTAG
CCCAACTCCACAAGTTAGTTTCACTTTCTTTTCATATTTATCATTCCATATCAAGCCCTC
TATATCAAATGTTTTGTCATGATTTTGTGTAATGTTTATAACTATTTTATTCATTTTACT
AGATTCATTCTAAAATTTTTGAAATGGTAAATTCTTAAACTGTGGAAACCATTGAAGGTG
CTTCTTAACTGTTCCCCAGATTTATACAAGTATTGGATGATACCTTGAGTTTACAGCTGT
ATGAATATTAGTGCAGAAAATTAAAAAAATTTTTTTGTTAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCACAACTACTGCTCAGTGAACAATGGTGGCTGCACCCACCTCTGCTTGGCCACCCCAGG
AAGCAGGACCTGCCGTTGCCCTGACAACACCCTGGGCGTTGACTGTATCGAGCAGAAATG
AAGACAAGTATTTCACAGCAACACCCTACTTGAAAGGGTCCAGAATGAAGACTATCTGAC
TTTGTGGCTGTGTGGCCCTCAGACCCAGGTCCAACCTCAGCCTGAACCTCAGCAGCACTG
CCCTCACAGATCCCCACAACATAGGCCCTGGGCTTCTGGAATGGGAAAGCCTCTACCCCT
ACAGAAAGACAGAAATCCTCCCTGACCCCAACCCTCAGACTTATATAGCCCTGAGTGAGG
ATCGTGTGCCCCATCCTGGTACCCTGGACCCTTTCTTCAACCTTAACATCCCGGTGATGA
GCAGAACCTGCCCTGTGGCCTTATGAGCTCAGCCTCACTTGGAGACACCCATCATCCCAT
CAGGGGCTGGATACCAGCTAGGATTGTCCAGGCAAGGCTGTGAGCAGAGGAGGGAGTTAG
CCCTCCCATGTTTTTTCTCTTGGTGCTCTGATTTCCCTCTTTAAACTCTTAGCGTTTTAC
CCCTGAGATCTGTACCCCCTGCATCCTGCCCAATGCCCACATACTAGTGAGAAGGCCCTG
CCTTTTGATCAGAACCCACCCTGTCCAAGGGATATGTGGGTATTTGGTGGATGATACTGA
GCAGCCCCTCCCAGGTAAGTTATTGGCATTTCAGCAGTAGGCTTTTGTAGTCAAAGGCTT
AAATCAAAGGAGTGTCCAGTGGTAGGACTTACAGGGTGTAAAGTCTGATGTTTGAGGATG
AGGATTCTATTGATGTGCCTTAAGTTATACCAAAGATTACCGCATTACTCCTCCTCTTTG
TCCAAAGCACTTGGATCCTAGGGTCTAGTCTCTTGGGCAGCACAGCCTCGCTGCTGGCAC
CTGTGTCCAGCCTCTGCATGGACACCCATCTGAGACACGGGCTGGGGCTGGTTCCAGGGA
TGACCCCCCTATAGTTCCTCACCTTCGGCTTCCACACATAGGAGACCCTCTACGGTCAAC
GTGAGCTTTCTTCTCCTTTGTTTCTCCTCTGTCCATGGCCCTTGCTGGGTATGTTCTCAT
CCAGAGACACAATCCAGGAGGGCCAAACAGAATATTTATACTAGGGGTCCAGACCCTTTA
TTGATCATTGGTGCCATTAAAAGGACCATTGCCCCATTTCATTTTCTGTTTCTACGGTCT
ATTCAGAAAACATCTCCTGATGTTTATTATTATTAACATCAGTGCTATTATTATGATTAT
TATTATTTGGTCAGCTACTTCCCAGAGTCCTAAAACAGTAGAAATTTGGGATTGAAAGCT
TAGAATTGGAAGCTTGAGTCAGTCAAGATCAGGGGAGGGGCGTAGAGAAGACGCAGTGCA
AAGTCTCAAAGAGCTTGACTTCAGGACGTGGAAGAATTTGCCTAGTTTTCTCCTTACGGA
AGAGATGCCTCTTCTCATCTGTGAACCTCAGGACACTCAGCTCCTCTCACCGCCCCCCTC
TGCAGCCTATGGGAATCGGAGTCAAGAGAGCCTTTCCTTGAATAATTAGAGTTTGTTTTG
AGAGGCAGAGATATCCCCAAGAGTCGCCAGGTTTGGGGAACACATGGGTCTTTTATCTAG
CCCAACTCCACAAGTTAGTTTCACTTTCTTTTCATATTTATCATTCCATATCAAGCCCTC
TATATCAAATGTTTTGTCATGATTTTGTGTAATGTTTATAACTATTTTATTCATTTTACT
AGATTCATTCTAAAATTTTTGAAATGGTAAATTCTTAAACTGTGGAAACCATTGAAGGTG
CTTCTTAACTGTTCCCCAGATTTATACAAGTATTGGATGATACCTTGAGTTTACAGCTGT
ATGAATATTAGTGCAGAAAATTAAAAAAATTTTTTTGTTAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|602056|emb|CAA58148.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|602056|emb|CAA58148.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-119, - strand, RNAz p=0.798899
               

               
               160-279, - strand, RNAz p=0.887663

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, - strand, RNAz p=0.798899
               

               
               160-279, - strand, RNAz p=0.887663

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-124, gnl|bosTau2|chr28 (4144148-4144025)
               

               
               1-124, gnl|Hg17|chr1 (232467328-232467200)
               

               
               1-124, gnl|Mm7|chr13 (12852677-12852805)
               


               
               126-1168, gnl|bosTau2|chr28 (4144005-4142986)
               

               
               126-1168, gnl|Hg17|chr1 (232467181-232466093)
               

               
               126-1168, gnl|Mm7|chr13 (12852824-12853950)
               


               
               1458-1965, gnl|bosTau2|chr28 (4142588-4142078)
               

               
               1458-1965, gnl|Hg17|chr1 (232465693-232465172)
               

               
               1458-1965, gnl|Mm7|chr13 (12854524-12854994)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-124, gnl|bosTau2|chr28 (4144148-4144025)
               

               
               1-124, gnl|Hg17|chr1 (232467328-232467200)
               

               
               1-124, gnl|Mm7|chr13 (12852677-12852805)
               


               
               126-1168, gnl|bosTau2|chr28 (4144005-4142986)
               

               
               126-1168, gnl|Hg17|chr1 (232467181-232466093)
               

               
               126-1168, gnl|Mm7|chr13 (12852824-12853950)
               


               
               1458-1965, gnl|bosTau2|chr28 (4142588-4142078)
               

               
               1458-1965, gnl|Hg17|chr1 (232465693-232465172)
               

               
               1458-1965, gnl|Mm7|chr13 (12854524-12854994)

Expressed library(ies): 37 entry(ies)

More info

Expressed library(ies): 37 entry(ies)

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               fat (1.03199)
               

               
               che (0.545256)
               

               
               ese (0.506009)
               

               
               amn (0.417711)
               

               
               nep (0.36785)
               

               
               cut (0.339847)
               

               
               nje (0.33184)
               

               
               cte (0.29274)
               

               
               kid (0.259471)
               

               
               tra (0.246184)
               

               
               eep (0.245128)
               

               
               cly (0.241284)
               

               
               mas (0.210305)
               

               
               cty (0.20816)
               

               
               hea (0.204499)
               

               
               ldo (0.194005)
               

               
               gul (0.177588)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

Expressed library(ies): 37 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fat (1.03199)
               

               
               che (0.545256)
               

               
               ese (0.506009)
               

               
               amn (0.417711)
               

               
               nep (0.36785)
               

               
               cut (0.339847)
               

               
               nje (0.33184)
               

               
               cte (0.29274)
               

               
               kid (0.259471)
               

               
               tra (0.246184)
               

               
               eep (0.245128)
               

               
               cly (0.241284)
               

               
               mas (0.210305)
               

               
               cty (0.20816)
               

               
               hea (0.204499)
               

               
               ldo (0.194005)
               

               
               gul (0.177588)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

	1-119, - strand, RNAz p=0.798899
	160-279, - strand, RNAz p=0.887663

	1-124, gnl\|bosTau2\|chr28 (4144148-4144025)
	1-124, gnl\|Hg17\|chr1 (232467328-232467200)
	1-124, gnl\|Mm7\|chr13 (12852677-12852805)

	126-1168, gnl\|bosTau2\|chr28 (4144005-4142986)
	126-1168, gnl\|Hg17\|chr1 (232467181-232466093)
	126-1168, gnl\|Mm7\|chr13 (12852824-12853950)

	1458-1965, gnl\|bosTau2\|chr28 (4142588-4142078)
	1458-1965, gnl\|Hg17\|chr1 (232465693-232465172)
	1458-1965, gnl\|Mm7\|chr13 (12854524-12854994)

	fat (1.03199)
	che (0.545256)
	ese (0.506009)
	amn (0.417711)
	nep (0.36785)
	cut (0.339847)
	nje (0.33184)
	cte (0.29274)
	kid (0.259471)
	tra (0.246184)
	eep (0.245128)
	cly (0.241284)
	mas (0.210305)
	cty (0.20816)
	hea (0.204499)
	ldo (0.194005)
	gul (0.177588)
	duo (0.172801)
	mcp (0.170648)
	fhi (0.169578)
	csp (0.161186)
	cag (0.151194)
	ski (0.146735)
	lin (0.145603)
	csk (0.140746)
	cst (0.140036)
	hlv (0.139256)
	ste (0.135208)
	pla (0.133672)
	cov (0.132153)
	ova (0.129132)
	bla (0.124347)
	eru (0.120048)
	clu (0.119646)
	pgl (0.118483)
	spc (0.113366)
	eje (0.0988338)