Non-Coding RNA Search

Ss1.1-Pig4-TMW8055H10.5

Sequence:


               
               GGCGCACGCGGCCGCACTCCAGTTGACTTTGCGGAGATATGGAAGGCGGCTTTGGCTCGG
ATTTCGGGAGCTCCGGCAGCGGGAAGCTGGACCCGGGGCTTATCATGGAGCAGGTGAAAG
TGCAGATCGCCGTGGCCAACGCGCAGGAGCTGCTGCAGAGGATGACGGACAAGTGCTTCC
GGAAGTGCATCGGGAAGCCGGGGGGCTCCTTGGACAATTCGGAGCAGAAGTGCATCGCCA
TGTGCATGGACCGCTACATGGACGCCTGGAACACCGTGTCCCGTGCCTACAACTCTCGGC
TGCAGCGAGAACGAGCCAACATGTGATCGCGACGCGCCAGCAGCCCACTTCCCACCCCAC
CCCACTCCCAGTTCCATCTCCATAAATGCTGTTTGTGAGGCGGGGGCCAACGTGTGCGTG
CTGCCTGCCAGAAGTTTATGAGGACCAGACTGGTGCTGGGACAGTTGGTATTCTGTCTCT
CCGTGCCCCGTTCGCGCACACGTGCCGGCGAGTGTAACTTGCGTCTGGGGGGCCCCTGGC
CCGGGTGGTGCCTTCCCTAGTGCCCCTGTTACCGAATTGTGTCATATGGACCCTGTTGGG
GGCCGGCTTAGGCTCTATGTCTCCTAGGGGGTGTTCTTTTTCTGTTCCGTGGAGCCTGAA
GCTGAGATGGACACAGCACAAGCTTTATTCAGCAGTTAAAGTATGGAGACGCGTGAACAA
ACGAACTCACAGATCAGCTTCTTAGCTGGCGAGAGGGGCTTAATTTTAACAAGGAGGCCT
GTGTGTATGTCTACGCGGGAAGGGGCTGAGCTTTTTCCGAGGGAGTGGGGTGCCACCTCT
TTTTTATCTTTTTTGGTCTTTAATGTCTGGTCGAGGCTGCGGATGCGTGTGTTATTTAAT
AAGCTAATGTAGTAAAATCCACACATAATGAGACAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCGCACGCGGCCGCACTCCAGTTGACTTTGCGGAGATATGGAAGGCGGCTTTGGCTCGG
ATTTCGGGAGCTCCGGCAGCGGGAAGCTGGACCCGGGGCTTATCATGGAGCAGGTGAAAG
TGCAGATCGCCGTGGCCAACGCGCAGGAGCTGCTGCAGAGGATGACGGACAAGTGCTTCC
GGAAGTGCATCGGGAAGCCGGGGGGCTCCTTGGACAATTCGGAGCAGAAGTGCATCGCCA
TGTGCATGGACCGCTACATGGACGCCTGGAACACCGTGTCCCGTGCCTACAACTCTCGGC
TGCAGCGAGAACGAGCCAACATGTGATCGCGACGCGCCAGCAGCCCACTTCCCACCCCAC
CCCACTCCCAGTTCCATCTCCATAAATGCTGTTTGTGAGGCGGGGGCCAACGTGTGCGTG
CTGCCTGCCAGAAGTTTATGAGGACCAGACTGGTGCTGGGACAGTTGGTATTCTGTCTCT
CCGTGCCCCGTTCGCGCACACGTGCCGGCGAGTGTAACTTGCGTCTGGGGGGCCCCTGGC
CCGGGTGGTGCCTTCCCTAGTGCCCCTGTTACCGAATTGTGTCATATGGACCCTGTTGGG
GGCCGGCTTAGGCTCTATGTCTCCTAGGGGGTGTTCTTTTTCTGTTCCGTGGAGCCTGAA
GCTGAGATGGACACAGCACAAGCTTTATTCAGCAGTTAAAGTATGGAGACGCGTGAACAA
ACGAACTCACAGATCAGCTTCTTAGCTGGCGAGAGGGGCTTAATTTTAACAAGGAGGCCT
GTGTGTATGTCTACGCGGGAAGGGGCTGAGCTTTTTCCGAGGGAGTGGGGTGCCACCTCT
TTTTTATCTTTTTTGGTCTTTAATGTCTGGTCGAGGCTGCGGATGCGTGTGTTATTTAAT
AAGCTAATGTAGTAAAATCCACACATAATGAGACAG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               TI13B_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               TI13B_HUMAN

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               774-892, + strand, RNAz p=0.541882

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               774-892, + strand, RNAz p=0.541882

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-158, gnl|bosTau2|chr7 (17935450-17935607)
               

               
               1-158, gnl|Hg17|chr19 (2378569-2378412)
               

               
               1-158, gnl|Mm7|chr10 (80690384-80690229)
               


               
               225-601, gnl|bosTau2|chr7 (17935936-17936319)
               


               
               774-934, gnl|bosTau2|chr10 (35933942-35933780)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-158, gnl|bosTau2|chr7 (17935450-17935607)
               

               
               1-158, gnl|Hg17|chr19 (2378569-2378412)
               

               
               1-158, gnl|Mm7|chr10 (80690384-80690229)
               


               
               225-601, gnl|bosTau2|chr7 (17935936-17936319)
               


               
               774-934, gnl|bosTau2|chr10 (35933942-35933780)

Expressed library(ies): 37 entry(ies)

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Expressed library(ies): 37 entry(ies)

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               cki (0.826173)
               

               
               che (0.68157)
               

               
               nco (0.485201)
               

               
               ecc (0.46014)
               

               
               nep (0.36785)
               

               
               mcp (0.341297)
               

               
               fhi (0.339155)
               

               
               csp (0.322373)
               

               
               cga (0.279096)
               

               
               nca (0.273748)
               

               
               ece (0.229305)
               

               
               nms (0.213858)
               

               
               hea (0.204499)
               

               
               fli (0.202881)
               

               
               eje (0.197668)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               eli (0.151814)
               

               
               cag (0.151194)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)

Expressed library(ies): 37 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.826173)
               

               
               che (0.68157)
               

               
               nco (0.485201)
               

               
               ecc (0.46014)
               

               
               nep (0.36785)
               

               
               mcp (0.341297)
               

               
               fhi (0.339155)
               

               
               csp (0.322373)
               

               
               cga (0.279096)
               

               
               nca (0.273748)
               

               
               ece (0.229305)
               

               
               nms (0.213858)
               

               
               hea (0.204499)
               

               
               fli (0.202881)
               

               
               eje (0.197668)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               eli (0.151814)
               

               
               cag (0.151194)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)

	1-158, gnl\|bosTau2\|chr7 (17935450-17935607)
	1-158, gnl\|Hg17\|chr19 (2378569-2378412)
	1-158, gnl\|Mm7\|chr10 (80690384-80690229)

	225-601, gnl\|bosTau2\|chr7 (17935936-17936319)

	774-934, gnl\|bosTau2\|chr10 (35933942-35933780)

	cki (0.826173)
	che (0.68157)
	nco (0.485201)
	ecc (0.46014)
	nep (0.36785)
	mcp (0.341297)
	fhi (0.339155)
	csp (0.322373)
	cga (0.279096)
	nca (0.273748)
	ece (0.229305)
	nms (0.213858)
	hea (0.204499)
	fli (0.202881)
	eje (0.197668)
	fty (0.17584)
	ill (0.175593)
	ton (0.1755)
	eye (0.170503)
	cut (0.169924)
	nje (0.16592)
	cje (0.165235)
	eli (0.151814)
	cag (0.151194)
	spl (0.143184)
	csk (0.140746)
	cst (0.140036)
	hlv (0.139256)
	ssp (0.13552)
	ste (0.135208)
	nmm (0.132802)
	cov (0.132153)
	eep (0.122564)
	cly (0.120642)
	ebs (0.118301)
	jca (0.11396)
	nbm (0.0993246)