Ss1.1-Pig4-TMW8055H12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGCAGGCTCTGGAGGACTTGGACTACCTGGCAGCCCTGGACAACGACGGGAATCTCTCGG AATTTGGGATCATCATGTCGGAGTTTCCTCTTGACCCACAGCTCTCCAAGTCCATCTTAG CATCCTGTGAATTTGACTGTGTAGATGAAATGCTAACCATTGCTGCCATGGTAACAGCTC CTAATTGCTTTTCGCATCTGCCGAGCGGCGCGGAGGCGGAGGCCCTGACTTGCTGGAAGA CATTTTTACATCCTGAAGGGGATCACTTCACCCTCGTCAACCTCTACAAGGCCTTCCAGG ATGTGACTCTGAATTCCACCAGCGAGCACTGTGTTGAAAAGTGGTGTCACGATTACTTCC TCAACTGTTCTGCCCTCAGGATGGCAGACGTTATCCGGGCGGAGCTCTTAGAAATTATCA AGCGAATCGAGCTTCCCTACGCAGAACCTGCTTTTGGCTCGAAGGAAAACACGCTGAACA TAAAGAAGGCTCTTCTGTCTGGTTACTTCATGCAGATCGCAAGGGATGTTGACGGCTCGG GGAACTACCTGATGCTGACACACAAGCAGGTAGCACAGCTGCACCCCCTGTCTTGTTACT CTGTCACCAAGAAGATGCCGGAGTGGGTGCTCTTCCATAAATTCAGCATCTCCGAAAACA ACTACATCAGGATCGCCTCAGAAATCTCTCCAGAACTATTTATGCAACTGGTACCACAAT ACTATTTCAGCAATCTGCCTCCTAGCGAGAGCAAGGATATTCTTCAGCAGGTAATGGCTC AGCTCTCGCCCATCACGGACCAGACGACGAGCGAGACGTGCCCTGAAACTACTGAACAGA GATGCGCCATCCAGTGACTGCGCAGAGCCTCTCCCCGGAGCCTGACGTGCAATAGAGCCC ACAGGCCGCCCGACGGCTGGTCCCCTGGAGTGACTGATGTGCGGGTGCTCGCCGCGAGGG GCCATCCCACCTGCACAGGAGAGTCTTGAAAAATAACGCTTTGTGTGTTATTTAAAAATT AAAAATAGAAGTTTTTATTCAGTTCTTTCAATTACCACTCCATGTTTTTCTTCTTATTGG AAACCTTTTTAATCAACCATTCTTAATTTGACCAAAATTTTAAAAAGCAAAGATATTTTG TAAATGCGTCACAGACACAGGTGACAGAAGCCTACTTTTGTAGAGGACTTTAACCTGAAT AAAGTCATGACATTTTCCGTAACTCTCCACGGAGTCTTCTGGTAATTCCCCAAAACGGGC CCACCGCTGTCCTCGGGAGACGGCTTAGACGGACAGGTGCTCTGTGAGTTTCTCCATGAT TTCGCTCATCTCATCGCCCGGAACGAACATCACAGTCCGCAGGGGCTTCAAGGGCACGTC GTCAAAGGACCATCTGCCCCCCAGGCAGGTGTCGCTCTCCTCCTGCACCGGGTAGCTGAA CTTCAGGAGCGCCTTCTCATAGAAAAATTCTTCCTCTGCATTTGCAAACATCAACTCCTC TTTCTTCGGATCACTCCATTTCTTTCTGGAATTGCTTTTTCCTGCTTCCACAAACGTCTT GCTGATCAGAAGGTAGAAGTGACACTTCCCACATGGCTTGTTAGTTCTGTGCGCCTCTGC TAGTTCTTTCTGCAGCTGCTGGTGCAGGGGCAGGGCAATCTGGGGGGGGACGTTGACGAA TCGCTCGCTCAGCAGAAAGCCCACGGGCCTGGCGGCGTCACCGAGGAGCCGTCCCAGCTG CTCAGCCAGGCCCTTCCCGCAGTTCTTCTCACAGAGGCGGAGGATCCACTCCTTAATCTG TTCAGCACACGGGGTGCCCTTTCTTTCAGTTAAATTTAAAAGACTTATGAAACCGAAAAT CTCATCTTCATCCACGTCATCATCGCTGTCTTCTGAAACAACCGACTGCTTAATCACACT CCCAATATGGTTCTGCTGAATTAAGAGATCTGTTAGTTCTGCTGTGTTCACAGGAGCTTT TAGGAAAAGCTGCTGCAGTAATTTCTTAATTCCGTCGTAATCATTATCTGAGATGGAATA AGCTTCAAATTCAATATTCACTTCCTCATTGATGATCTCGTCCTCTTCATCCTCGCCTTC GTCACTGTCTTCATCGTCTTCATCCTCACCCTCGACTTCATCCTCCTCCTCCTCCTCATC GCGCGGAGCAGGAGACCCATTGCCCACGGCGCGCCGCTTGGGCCTGGACGCCATGTTGCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGCAGGCTCTGGAGGACTTGGACTACCTGGCAGCCCTGGACAACGACGGGAATCTCTCGG AATTTGGGATCATCATGTCGGAGTTTCCTCTTGACCCACAGCTCTCCAAGTCCATCTTAG CATCCTGTGAATTTGACTGTGTAGATGAAATGCTAACCATTGCTGCCATGGTAACAGCTC CTAATTGCTTTTCGCATCTGCCGAGCGGCGCGGAGGCGGAGGCCCTGACTTGCTGGAAGA CATTTTTACATCCTGAAGGGGATCACTTCACCCTCGTCAACCTCTACAAGGCCTTCCAGG ATGTGACTCTGAATTCCACCAGCGAGCACTGTGTTGAAAAGTGGTGTCACGATTACTTCC TCAACTGTTCTGCCCTCAGGATGGCAGACGTTATCCGGGCGGAGCTCTTAGAAATTATCA AGCGAATCGAGCTTCCCTACGCAGAACCTGCTTTTGGCTCGAAGGAAAACACGCTGAACA TAAAGAAGGCTCTTCTGTCTGGTTACTTCATGCAGATCGCAAGGGATGTTGACGGCTCGG GGAACTACCTGATGCTGACACACAAGCAGGTAGCACAGCTGCACCCCCTGTCTTGTTACT CTGTCACCAAGAAGATGCCGGAGTGGGTGCTCTTCCATAAATTCAGCATCTCCGAAAACA ACTACATCAGGATCGCCTCAGAAATCTCTCCAGAACTATTTATGCAACTGGTACCACAAT ACTATTTCAGCAATCTGCCTCCTAGCGAGAGCAAGGATATTCTTCAGCAGGTAATGGCTC AGCTCTCGCCCATCACGGACCAGACGACGAGCGAGACGTGCCCTGAAACTACTGAACAGA GATGCGCCATCCAGTGACTGCGCAGAGCCTCTCCCCGGAGCCTGACGTGCAATAGAGCCC ACAGGCCGCCCGACGGCTGGTCCCCTGGAGTGACTGATGTGCGGGTGCTCGCCGCGAGGG GCCATCCCACCTGCACAGGAGAGTCTTGAAAAATAACGCTTTGTGTGTTATTTAAAAATT AAAAATAGAAGTTTTTATTCAGTTCTTTCAATTACCACTCCATGTTTTTCTTCTTATTGG AAACCTTTTTAATCAACCATTCTTAATTTGACCAAAATTTTAAAAAGCAAAGATATTTTG TAAATGCGTCACAGACACAGGTGACAGAAGCCTACTTTTGTAGAGGACTTTAACCTGAAT AAAGTCATGACATTTTCCGTAACTCTCCACGGAGTCTTCTGGTAATTCCCCAAAACGGGC CCACCGCTGTCCTCGGGAGACGGCTTAGACGGACAGGTGCTCTGTGAGTTTCTCCATGAT TTCGCTCATCTCATCGCCCGGAACGAACATCACAGTCCGCAGGGGCTTCAAGGGCACGTC GTCAAAGGACCATCTGCCCCCCAGGCAGGTGTCGCTCTCCTCCTGCACCGGGTAGCTGAA CTTCAGGAGCGCCTTCTCATAGAAAAATTCTTCCTCTGCATTTGCAAACATCAACTCCTC TTTCTTCGGATCACTCCATTTCTTTCTGGAATTGCTTTTTCCTGCTTCCACAAACGTCTT GCTGATCAGAAGGTAGAAGTGACACTTCCCACATGGCTTGTTAGTTCTGTGCGCCTCTGC TAGTTCTTTCTGCAGCTGCTGGTGCAGGGGCAGGGCAATCTGGGGGGGGACGTTGACGAA TCGCTCGCTCAGCAGAAAGCCCACGGGCCTGGCGGCGTCACCGAGGAGCCGTCCCAGCTG CTCAGCCAGGCCCTTCCCGCAGTTCTTCTCACAGAGGCGGAGGATCCACTCCTTAATCTG TTCAGCACACGGGGTGCCCTTTCTTTCAGTTAAATTTAAAAGACTTATGAAACCGAAAAT CTCATCTTCATCCACGTCATCATCGCTGTCTTCTGAAACAACCGACTGCTTAATCACACT CCCAATATGGTTCTGCTGAATTAAGAGATCTGTTAGTTCTGCTGTGTTCACAGGAGCTTT TAGGAAAAGCTGCTGCAGTAATTTCTTAATTCCGTCGTAATCATTATCTGAGATGGAATA AGCTTCAAATTCAATATTCACTTCCTCATTGATGATCTCGTCCTCTTCATCCTCGCCTTC GTCACTGTCTTCATCGTCTTCATCCTCACCCTCGACTTCATCCTCCTCCTCCTCCTCATC GCGCGGAGCAGGAGACCCATTGCCCACGGCGCGCCGCTTGGGCCTGGACGCCATGTTGCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 328-446, - strand, RNAz p=0.708751 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 328-446, - strand, RNAz p=0.708751 |
| Aligned organism(s): 55 entry(ies) | More info |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
| 1-177, gnl|bosTau2|chr26 (33302234-33302410) | |
| 1-177, gnl|Hg17|chr10 (127520478-127520302) | |
| 1-177, gnl|Mm7|chr7 (130130274-130130098) | |
| 328-515, gnl|bosTau2|chr26 (33304860-33305047) | |
| 328-515, gnl|canFam2|chr28 (38001016-38001255) | |
| 328-515, gnl|danRer3|chrNA (242721852-242722085) | |
| 328-515, gnl|dasNov1|scaffold_100 (298260-298483) | |
| 328-515, gnl|echTel1|scaffold_55881 (819-620) | |
| 328-515, gnl|fr1|chrUn (25659413-25659623) | |
| 328-515, gnl|galGal2|chrUn (136789720-136789932) | |
| 328-515, gnl|hg17|chr10 (127517550-127517798) | |
| 328-515, gnl|Hg17|chr10 (127517747-127517560) | |
| 328-515, gnl|loxAfr1|scaffold_11711 (5577-5329) | |
| 328-515, gnl|mm7|chr7 (130127927-130128163) | |
| 328-515, gnl|Mm7|chr7 (130128123-130127936) | |
| 328-515, gnl|monDom2|scaffold_144 (951303-951531) | |
| 328-515, gnl|oryCun1|scaffold_200457 (249-59) | |
| 328-515, gnl|panTro1|chr8 (130037772-130038020) | |
| 328-515, gnl|rheMac2|chr9 (125423980-125424228) | |
| 328-515, gnl|rn3|chr1 (193369984-193370220) | |
| 328-515, gnl|tetNig1|chr17 (7433628-7433382) | |
| 328-515, gnl|xenTro1|scaffold_47 (2955166-2954939) | |
| 1000-1614, gnl|bosTau2|chr17 (33568490-33569107) | |
| 1000-1614, gnl|Hg17|chr10 (127515108-127512347) | |
| 1000-1614, gnl|Mm7|chr7 (130126035-130124014) | |
| 1625-1820, gnl|bosTau2|chr26 (33310612-33310807) | |
| 1625-1820, gnl|canFam2|chr28 (37994290-37994512) | |
| 1625-1820, gnl|danRer3|chrNA (242710776-242710993) | |
| 1625-1820, gnl|dasNov1|scaffold_67340 (5645-5866) | |
| 1625-1820, gnl|fr1|chrUn (25657397-25657591) | |
| 1625-1820, gnl|galGal2|chrUn (136784603-136784824) | |
| 1625-1820, gnl|hg17|chr10 (127509956-127510179) | |
| 1625-1820, gnl|Hg17|chr10 (127510172-127509977) | |
| 1625-1820, gnl|mm7|chr7 (130122470-130122692) | |
| 1625-1820, gnl|Mm7|chr7 (130122686-130122491) | |
| 1625-1820, gnl|monDom2|scaffold_144 (944991-945212) | |
| 1625-1820, gnl|oryCun1|scaffold_206318 (1345-1573) | |
| 1625-1820, gnl|panTro1|chr8 (130030187-130030410) | |
| 1625-1820, gnl|rheMac2|chr9 (125417123-125417345) | |
| 1625-1820, gnl|rn3|chr1 (193364728-193364950) | |
| 1625-1820, gnl|tetNig1|chr2_random (1850420-1850630) | |
| 1625-1820, gnl|xenTro1|scaffold_1245 (125802-125579) | |
| 2064-2220, gnl|bosTau2|chr26 (33323792-33323939) | |
| 2064-2220, gnl|canFam2|chr28 (37983137-37983335) | |
| 2064-2220, gnl|dasNov1|scaffold_6699 (75848-75674) | |
| 2064-2220, gnl|hg17|chr10 (127502093-127502288) | |
| 2064-2220, gnl|Hg17|chr10 (127502282-127502111) | |
| 2064-2220, gnl|loxAfr1|scaffold_153960 (4843-4651) | |
| 2064-2220, gnl|mm7|chr7 (130114228-130114430) | |
| 2064-2220, gnl|Mm7|chr7 (130114423-130114246) | |
| 2064-2220, gnl|monDom2|scaffold_144 (940819-941014) | |
| 2064-2220, gnl|oryCun1|scaffold_173239 (3759-3934) | |
| 2064-2220, gnl|panTro1|chr8 (130022322-130022517) | |
| 2064-2220, gnl|rheMac2|chr9 (125409226-125409421) | |
| 2064-2220, gnl|rn3|chr1 (193355658-193355856) |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-177, gnl|bosTau2|chr26 (33302234-33302410) | |
| 1-177, gnl|Hg17|chr10 (127520478-127520302) | |
| 1-177, gnl|Mm7|chr7 (130130274-130130098) | |
| 328-515, gnl|bosTau2|chr26 (33304860-33305047) | |
| 328-515, gnl|canFam2|chr28 (38001016-38001255) | |
| 328-515, gnl|danRer3|chrNA (242721852-242722085) | |
| 328-515, gnl|dasNov1|scaffold_100 (298260-298483) | |
| 328-515, gnl|echTel1|scaffold_55881 (819-620) | |
| 328-515, gnl|fr1|chrUn (25659413-25659623) | |
| 328-515, gnl|galGal2|chrUn (136789720-136789932) | |
| 328-515, gnl|hg17|chr10 (127517550-127517798) | |
| 328-515, gnl|Hg17|chr10 (127517747-127517560) | |
| 328-515, gnl|loxAfr1|scaffold_11711 (5577-5329) | |
| 328-515, gnl|mm7|chr7 (130127927-130128163) | |
| 328-515, gnl|Mm7|chr7 (130128123-130127936) | |
| 328-515, gnl|monDom2|scaffold_144 (951303-951531) | |
| 328-515, gnl|oryCun1|scaffold_200457 (249-59) | |
| 328-515, gnl|panTro1|chr8 (130037772-130038020) | |
| 328-515, gnl|rheMac2|chr9 (125423980-125424228) | |
| 328-515, gnl|rn3|chr1 (193369984-193370220) | |
| 328-515, gnl|tetNig1|chr17 (7433628-7433382) | |
| 328-515, gnl|xenTro1|scaffold_47 (2955166-2954939) | |
| 1000-1614, gnl|bosTau2|chr17 (33568490-33569107) | |
| 1000-1614, gnl|Hg17|chr10 (127515108-127512347) | |
| 1000-1614, gnl|Mm7|chr7 (130126035-130124014) | |
| 1625-1820, gnl|bosTau2|chr26 (33310612-33310807) | |
| 1625-1820, gnl|canFam2|chr28 (37994290-37994512) | |
| 1625-1820, gnl|danRer3|chrNA (242710776-242710993) | |
| 1625-1820, gnl|dasNov1|scaffold_67340 (5645-5866) | |
| 1625-1820, gnl|fr1|chrUn (25657397-25657591) | |
| 1625-1820, gnl|galGal2|chrUn (136784603-136784824) | |
| 1625-1820, gnl|hg17|chr10 (127509956-127510179) | |
| 1625-1820, gnl|Hg17|chr10 (127510172-127509977) | |
| 1625-1820, gnl|mm7|chr7 (130122470-130122692) | |
| 1625-1820, gnl|Mm7|chr7 (130122686-130122491) | |
| 1625-1820, gnl|monDom2|scaffold_144 (944991-945212) | |
| 1625-1820, gnl|oryCun1|scaffold_206318 (1345-1573) | |
| 1625-1820, gnl|panTro1|chr8 (130030187-130030410) | |
| 1625-1820, gnl|rheMac2|chr9 (125417123-125417345) | |
| 1625-1820, gnl|rn3|chr1 (193364728-193364950) | |
| 1625-1820, gnl|tetNig1|chr2_random (1850420-1850630) | |
| 1625-1820, gnl|xenTro1|scaffold_1245 (125802-125579) | |
| 2064-2220, gnl|bosTau2|chr26 (33323792-33323939) | |
| 2064-2220, gnl|canFam2|chr28 (37983137-37983335) | |
| 2064-2220, gnl|dasNov1|scaffold_6699 (75848-75674) | |
| 2064-2220, gnl|hg17|chr10 (127502093-127502288) | |
| 2064-2220, gnl|Hg17|chr10 (127502282-127502111) | |
| 2064-2220, gnl|loxAfr1|scaffold_153960 (4843-4651) | |
| 2064-2220, gnl|mm7|chr7 (130114228-130114430) | |
| 2064-2220, gnl|Mm7|chr7 (130114423-130114246) | |
| 2064-2220, gnl|monDom2|scaffold_144 (940819-941014) | |
| 2064-2220, gnl|oryCun1|scaffold_173239 (3759-3934) | |
| 2064-2220, gnl|panTro1|chr8 (130022322-130022517) | |
| 2064-2220, gnl|rheMac2|chr9 (125409226-125409421) | |
| 2064-2220, gnl|rn3|chr1 (193355658-193355856) |
| Expressed library(ies): 49 entry(ies) | More info |
| Expressed library(ies): 49 entry(ies) | Help | Less info |
| cki (0.991408) | |
| cje (0.991408) | |
| sme (0.91631) | |
| sto (0.899119) | |
| col (0.780031) | |
| cmu (0.745573) | |
| ill (0.702371) | |
| pgl (0.592417) | |
| csk (0.562984) | |
| cut (0.509771) | |
| clu (0.478583) | |
| tes (0.415628) | |
| fcc (0.39557) | |
| kid (0.389206) | |
| elu (0.385356) | |
| cly (0.361925) | |
| rec (0.346141) | |
| nbm (0.297974) | |
| lnt (0.284616) | |
| hlv (0.278513) | |
| bla (0.248694) | |
| eep (0.245128) | |
| cbe (0.239234) | |
| ecc (0.23007) | |
| nms (0.213858) | |
| jej (0.197844) | |
| aor (0.195274) | |
| sin (0.174948) | |
| duo (0.172801) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| fco (0.157208) | |
| eli (0.151814) | |
| lun (0.150489) | |
| bfe (0.149858) | |
| spl (0.143184) | |
| pty (0.142714) | |
| cst (0.140036) | |
| nca (0.136874) | |
| che (0.136314) | |
| pla (0.133672) | |
| lyg (0.133103) | |
| sug (0.127291) | |
| thg (0.126791) | |
| ese (0.126502) | |
| tra (0.123092) | |
| jca (0.11396) | |
| ldo (0.0970026) |
| Expressed library(ies): 49 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cki (0.991408) | |
| cje (0.991408) | |
| sme (0.91631) | |
| sto (0.899119) | |
| col (0.780031) | |
| cmu (0.745573) | |
| ill (0.702371) | |
| pgl (0.592417) | |
| csk (0.562984) | |
| cut (0.509771) | |
| clu (0.478583) | |
| tes (0.415628) | |
| fcc (0.39557) | |
| kid (0.389206) | |
| elu (0.385356) | |
| cly (0.361925) | |
| rec (0.346141) | |
| nbm (0.297974) | |
| lnt (0.284616) | |
| hlv (0.278513) | |
| bla (0.248694) | |
| eep (0.245128) | |
| cbe (0.239234) | |
| ecc (0.23007) | |
| nms (0.213858) | |
| jej (0.197844) | |
| aor (0.195274) | |
| sin (0.174948) | |
| duo (0.172801) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| fco (0.157208) | |
| eli (0.151814) | |
| lun (0.150489) | |
| bfe (0.149858) | |
| spl (0.143184) | |
| pty (0.142714) | |
| cst (0.140036) | |
| nca (0.136874) | |
| che (0.136314) | |
| pla (0.133672) | |
| lyg (0.133103) | |
| sug (0.127291) | |
| thg (0.126791) | |
| ese (0.126502) | |
| tra (0.123092) | |
| jca (0.11396) | |
| ldo (0.0970026) |